Wall clock time and date at job start Tue Mar 31 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46573 * 2 1 4 4 C 1.50706 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.33390 * 125.20218 * 89.99728 * 4 3 2 6 6 C 1.38427 * 114.92030 * 179.79132 * 5 4 3 7 7 C 1.33390 * 114.91775 * 0.43273 * 6 5 4 8 8 C 1.50699 * 125.20389 * 179.86097 * 7 6 5 9 9 N 1.46906 * 109.47317 * 89.71425 * 8 7 6 10 10 C 1.47897 * 110.99555 * 69.87469 * 9 8 7 11 11 C 1.54000 * 107.05672 * 145.84575 * 10 9 8 12 12 C 1.54598 * 105.22213 * 358.72428 * 11 10 9 13 13 O 1.42900 * 110.72206 * 96.45416 * 12 11 10 14 14 C 1.50709 * 110.72231 * 219.73162 * 12 11 10 15 15 H 1.07997 * 119.99484 * 118.54840 * 14 12 11 16 16 C 1.37869 * 119.99916 * 298.55075 * 14 12 11 17 17 N 1.31519 * 120.00697 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99863 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47155 * 89.99908 * 18 16 14 20 20 H 1.48498 * 109.47364 * 210.00073 * 18 16 14 21 21 H 1.48505 * 109.46995 * 330.00007 * 18 16 14 22 22 C 1.48533 * 111.00245 * 187.27419 * 9 8 7 23 23 S 1.75881 * 109.59642 * 359.59216 * 7 6 5 24 24 H 1.09008 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47247 * 299.99826 * 1 2 3 26 26 H 1.09000 * 109.47447 * 60.00351 * 1 2 3 27 27 H 1.08997 * 109.47247 * 240.00174 * 2 1 3 28 28 H 1.09000 * 109.47447 * 119.99649 * 2 1 3 29 29 H 1.08997 * 109.47192 * 60.00140 * 3 2 1 30 30 H 1.09006 * 109.47110 * 299.99277 * 3 2 1 31 31 H 1.07998 * 122.54247 * 0.02562 * 5 4 3 32 32 H 1.07995 * 122.54412 * 180.27563 * 6 5 4 33 33 H 1.09004 * 109.46704 * 329.71852 * 8 7 6 34 34 H 1.08991 * 109.47304 * 209.71592 * 8 7 6 35 35 H 1.09000 * 109.91881 * 26.49521 * 10 9 8 36 36 H 1.09002 * 110.08496 * 265.28456 * 10 9 8 37 37 H 1.09002 * 110.31026 * 117.69182 * 11 10 9 38 38 H 1.09000 * 110.30915 * 239.76211 * 11 10 9 39 39 H 0.96701 * 114.00035 * 61.44787 * 13 12 11 40 40 H 0.96995 * 120.00378 * 179.97438 * 17 16 14 41 41 H 1.09003 * 110.66452 * 318.71648 * 22 9 8 42 42 H 1.08998 * 110.66933 * 81.84247 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3163 1.4424 -1.0890 6 6 5.6782 1.4471 -0.8414 7 6 6.0148 1.4420 0.4494 8 6 7.4255 1.4424 0.9794 9 7 7.8836 2.8276 1.1514 10 6 7.1735 3.4855 2.2696 11 6 8.1730 4.4504 2.9340 12 6 9.4922 4.2732 2.1476 13 8 9.6193 5.2787 1.1401 14 6 10.6762 4.2978 3.0799 15 1 11.3203 3.4344 3.1574 16 6 10.9369 5.4224 3.8336 17 7 10.1527 6.4741 3.7387 18 14 12.4047 5.4531 4.9885 19 1 13.5946 5.9667 4.2633 20 1 12.1080 6.3390 6.1428 21 1 12.6786 4.0779 5.4776 22 6 9.3254 2.8714 1.5056 23 16 4.5603 1.4423 1.4382 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8901 31 1 3.9077 1.4426 -2.0887 32 1 6.4127 1.4519 -1.6331 33 1 8.0787 0.9287 0.2740 34 1 7.4528 0.9288 1.9403 35 1 6.8435 2.7381 2.9910 36 1 6.3153 4.0418 1.8924 37 1 7.8187 5.4780 2.8518 38 1 8.3178 4.1834 3.9808 39 1 9.6472 6.1811 1.4864 40 1 10.3360 7.2651 4.2693 41 1 9.5689 2.0890 2.2244 42 1 9.9438 2.7807 0.6126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598676357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:08 Heat of formation + Delta-G solvation = -28.891948 kcal Electronic energy + Delta-G solvation = -21358.442915 eV Core-core repulsion = 18236.330925 eV Total energy + Delta-G solvation = -3122.111990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.62613 -37.79438 -35.41546 -34.48098 -32.10401 -31.33946 -29.34577 -28.04030 -27.00614 -24.75927 -23.68587 -22.59340 -21.58658 -20.32459 -19.56416 -18.42387 -17.11461 -16.73240 -15.46573 -15.25203 -15.03130 -14.90475 -14.46784 -14.08207 -13.84517 -13.52785 -13.32426 -12.98145 -12.58870 -12.49520 -12.27710 -12.08376 -11.66750 -11.59916 -11.42803 -11.27680 -11.24392 -11.06175 -10.99807 -10.82057 -10.60391 -10.54271 -10.42428 -10.31592 -9.75141 -9.15772 -8.58967 -8.38539 -8.27871 -8.04864 -7.72651 -6.19556 -4.28035 1.12805 1.74793 2.16194 2.89728 3.22857 3.29982 3.32669 4.30113 4.59302 4.73764 4.75639 4.83896 4.99316 5.10060 5.20304 5.29520 5.44339 5.49355 5.56349 5.62613 5.69866 5.72585 5.79898 5.87210 5.93563 5.96742 6.03558 6.04324 6.19245 6.32989 6.46599 6.47915 6.61041 6.69024 6.90507 7.06024 7.39541 7.52486 7.55818 7.67738 7.83083 8.19614 8.74486 9.40880 9.57417 10.87466 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.037631 B = 0.003057 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.891493 B = 9155.988709 C = 9354.147284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.046 4.046 4 C -0.186 4.186 5 C -0.133 4.133 6 C -0.128 4.128 7 C -0.150 4.150 8 C 0.112 3.888 9 N -0.506 5.506 10 C 0.038 3.962 11 C -0.129 4.129 12 C 0.258 3.742 13 O -0.580 6.580 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.052 3.948 23 S 0.090 5.910 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.377 0.623 40 H 0.266 0.734 41 H 0.046 0.954 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 -10.976 -5.927 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.085 4.085 4 C -0.303 4.303 5 C -0.164 4.164 6 C -0.159 4.159 7 C -0.268 4.268 8 C -0.018 4.018 9 N -0.231 5.231 10 C -0.090 4.090 11 C -0.168 4.168 12 C 0.217 3.783 13 O -0.387 6.387 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.132 4.132 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.075 4.075 23 S 0.354 5.646 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.226 0.774 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.515 -11.062 -5.178 19.745 hybrid contribution 1.180 0.196 0.350 1.247 sum -14.334 -10.866 -4.828 18.624 Atomic orbital electron populations 1.21787 0.95616 1.01717 1.01887 1.21551 0.95594 0.96031 1.02573 1.20144 0.87891 0.97487 1.03019 1.24406 0.99187 1.10804 0.95949 1.20017 0.92964 1.04539 0.98889 1.20015 0.95912 1.03924 0.96026 1.24383 0.98003 1.08116 0.96302 1.20743 0.89494 0.92106 0.99455 1.64830 1.04772 1.12233 1.41222 1.22935 0.97953 0.97038 0.91028 1.22939 0.96272 0.98233 0.99317 1.19343 0.91121 0.83666 0.84123 1.86143 1.96621 1.19060 1.36912 1.21590 1.12027 1.00729 1.23247 0.92129 1.25001 0.96394 0.95370 0.96393 1.69741 1.37655 1.04341 1.41552 0.86490 0.82658 0.78039 0.80176 1.20433 1.21121 1.19870 1.23242 0.86873 0.98385 0.99026 1.84238 0.96968 1.73597 1.09764 0.92644 0.92666 0.92647 0.91683 0.91825 0.91001 0.90275 0.84868 0.84425 0.89368 0.94152 0.95566 0.91858 0.91483 0.92088 0.77400 0.92370 0.93598 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 3 C -0.05 -0.43 5.71 -27.88 -0.16 -0.59 16 4 C -0.19 -2.26 5.76 -36.00 -0.21 -2.47 16 5 C -0.13 -1.66 10.05 -41.21 -0.41 -2.07 16 6 C -0.13 -1.80 10.05 -41.21 -0.41 -2.21 16 7 C -0.15 -2.28 5.56 -36.00 -0.20 -2.49 16 8 C 0.11 1.83 5.26 -4.97 -0.03 1.81 16 9 N -0.51 -10.11 5.26 -231.79 -1.22 -11.33 16 10 C 0.04 0.78 5.89 -2.75 -0.02 0.76 16 11 C -0.13 -3.04 5.26 -25.37 -0.13 -3.18 16 12 C 0.26 6.48 0.96 -89.82 -0.09 6.40 16 13 O -0.58 -15.50 13.09 -35.23 -0.46 -15.96 16 14 C -0.54 -14.43 8.15 -34.44 -0.28 -14.71 16 15 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 16 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 17 N -0.89 -24.04 11.02 55.43 0.61 -23.43 16 18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.05 1.13 5.69 -1.81 -0.01 1.12 16 23 S 0.09 1.24 23.01 -107.50 -2.47 -1.23 16 24 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 34 H 0.04 0.65 7.81 -51.93 -0.41 0.24 16 35 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.67 7.99 -51.93 -0.41 1.25 16 38 H 0.06 1.49 7.84 -51.93 -0.41 1.09 16 39 H 0.38 10.14 7.48 45.56 0.34 10.48 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 42 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -27.99 352.88 -11.38 -39.37 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.31 Total: 9.24 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.83 Total: -17.64 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.61 Total: -34.76 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.46 Total: -15.96 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.47 Total: -1.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.99 -11.38 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598676357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.482 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds