Wall clock time and date at job start Tue Mar 31 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46573 * 2 1 4 4 C 1.50706 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.33390 * 125.20218 * 89.99728 * 4 3 2 6 6 C 1.38427 * 114.92030 * 179.79132 * 5 4 3 7 7 C 1.33390 * 114.91775 * 0.43273 * 6 5 4 8 8 C 1.50699 * 125.20389 * 179.86097 * 7 6 5 9 9 N 1.46906 * 109.47317 * 89.71425 * 8 7 6 10 10 C 1.47897 * 110.99555 * 69.87469 * 9 8 7 11 11 C 1.54000 * 107.05672 * 145.84575 * 10 9 8 12 12 C 1.54598 * 105.22213 * 358.72428 * 11 10 9 13 13 O 1.42900 * 110.72206 * 96.45416 * 12 11 10 14 14 C 1.50709 * 110.72231 * 219.73162 * 12 11 10 15 15 H 1.07997 * 119.99484 * 118.54840 * 14 12 11 16 16 C 1.37869 * 119.99916 * 298.55075 * 14 12 11 17 17 N 1.31519 * 120.00697 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99863 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47155 * 89.99908 * 18 16 14 20 20 H 1.48498 * 109.47364 * 210.00073 * 18 16 14 21 21 H 1.48505 * 109.46995 * 330.00007 * 18 16 14 22 22 C 1.48533 * 111.00245 * 187.27419 * 9 8 7 23 23 S 1.75881 * 109.59642 * 359.59216 * 7 6 5 24 24 H 1.09008 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47247 * 299.99826 * 1 2 3 26 26 H 1.09000 * 109.47447 * 60.00351 * 1 2 3 27 27 H 1.08997 * 109.47247 * 240.00174 * 2 1 3 28 28 H 1.09000 * 109.47447 * 119.99649 * 2 1 3 29 29 H 1.08997 * 109.47192 * 60.00140 * 3 2 1 30 30 H 1.09006 * 109.47110 * 299.99277 * 3 2 1 31 31 H 1.07998 * 122.54247 * 0.02562 * 5 4 3 32 32 H 1.07995 * 122.54412 * 180.27563 * 6 5 4 33 33 H 1.09004 * 109.46704 * 329.71852 * 8 7 6 34 34 H 1.08991 * 109.47304 * 209.71592 * 8 7 6 35 35 H 1.09000 * 109.91881 * 26.49521 * 10 9 8 36 36 H 1.09002 * 110.08496 * 265.28456 * 10 9 8 37 37 H 1.09002 * 110.31026 * 117.69182 * 11 10 9 38 38 H 1.09000 * 110.30915 * 239.76211 * 11 10 9 39 39 H 0.96701 * 114.00035 * 61.44787 * 13 12 11 40 40 H 0.96995 * 120.00378 * 179.97438 * 17 16 14 41 41 H 1.09003 * 110.66452 * 318.71648 * 22 9 8 42 42 H 1.08998 * 110.66933 * 81.84247 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3163 1.4424 -1.0890 6 6 5.6782 1.4471 -0.8414 7 6 6.0148 1.4420 0.4494 8 6 7.4255 1.4424 0.9794 9 7 7.8836 2.8276 1.1514 10 6 7.1735 3.4855 2.2696 11 6 8.1730 4.4504 2.9340 12 6 9.4922 4.2732 2.1476 13 8 9.6193 5.2787 1.1401 14 6 10.6762 4.2978 3.0799 15 1 11.3203 3.4344 3.1574 16 6 10.9369 5.4224 3.8336 17 7 10.1527 6.4741 3.7387 18 14 12.4047 5.4531 4.9885 19 1 13.5946 5.9667 4.2633 20 1 12.1080 6.3390 6.1428 21 1 12.6786 4.0779 5.4776 22 6 9.3254 2.8714 1.5056 23 16 4.5603 1.4423 1.4382 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8901 31 1 3.9077 1.4426 -2.0887 32 1 6.4127 1.4519 -1.6331 33 1 8.0787 0.9287 0.2740 34 1 7.4528 0.9288 1.9403 35 1 6.8435 2.7381 2.9910 36 1 6.3153 4.0418 1.8924 37 1 7.8187 5.4780 2.8518 38 1 8.3178 4.1834 3.9808 39 1 9.6472 6.1811 1.4864 40 1 10.3360 7.2651 4.2693 41 1 9.5689 2.0890 2.2244 42 1 9.9438 2.7807 0.6126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598676357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:07 Heat of formation + Delta-G solvation = -45.558649 kcal Electronic energy + Delta-G solvation = -21359.165637 eV Core-core repulsion = 18236.330925 eV Total energy + Delta-G solvation = -3122.834712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21132 -38.94825 -36.81021 -35.67686 -34.17222 -32.69771 -30.59191 -29.83258 -28.29129 -26.37102 -24.95426 -23.72406 -22.30722 -21.90179 -21.43811 -19.54210 -19.00162 -17.89735 -17.14604 -16.87548 -16.28488 -16.10100 -15.82515 -15.66675 -14.96218 -14.80430 -14.59390 -14.26608 -14.00327 -13.73613 -13.56539 -13.35759 -13.20078 -12.97643 -12.84111 -12.71851 -12.56981 -12.32515 -12.27728 -12.18823 -12.11461 -12.00888 -11.74414 -11.57790 -11.42664 -11.08668 -10.60732 -10.12054 -9.47049 -9.34422 -9.22807 -8.21551 -6.37751 0.08469 0.71280 1.12577 1.40326 1.42260 1.51405 1.86776 2.38013 3.02862 3.21718 3.74198 3.83518 3.94792 4.05993 4.10420 4.20181 4.22708 4.29584 4.40059 4.47507 4.59543 4.65205 4.70539 4.76421 4.82858 4.84141 4.88610 4.99149 5.06894 5.18437 5.22243 5.22847 5.36884 5.43682 5.45522 5.46328 5.55034 5.67643 5.73764 5.87574 6.12349 6.23371 6.68554 7.34116 7.46885 8.84050 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.037631 B = 0.003057 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.891493 B = 9155.988709 C = 9354.147284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.047 4.047 4 C -0.173 4.173 5 C -0.144 4.144 6 C -0.124 4.124 7 C -0.179 4.179 8 C 0.115 3.885 9 N -0.514 5.514 10 C 0.053 3.947 11 C -0.120 4.120 12 C 0.240 3.760 13 O -0.589 6.589 14 C -0.561 4.561 15 H 0.057 0.943 16 C 0.029 3.971 17 N -0.912 5.912 18 Si 0.960 3.040 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.270 1.270 22 C 0.060 3.940 23 S 0.070 5.930 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.371 0.629 40 H 0.268 0.732 41 H 0.053 0.947 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 -12.002 -6.480 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.291 4.291 5 C -0.174 4.174 6 C -0.155 4.155 7 C -0.296 4.296 8 C -0.014 4.014 9 N -0.238 5.238 10 C -0.075 4.075 11 C -0.159 4.159 12 C 0.200 3.800 13 O -0.396 6.396 14 C -0.599 4.599 15 H 0.075 0.925 16 C -0.172 4.172 17 N -0.551 5.551 18 Si 0.786 3.214 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.068 4.068 23 S 0.334 5.666 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.176 0.824 32 H 0.163 0.837 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.219 0.781 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.605 -12.105 -5.736 21.335 hybrid contribution 1.448 0.510 0.471 1.605 sum -15.157 -11.595 -5.266 19.797 Atomic orbital electron populations 1.21768 0.94342 1.02317 1.02340 1.21514 0.96653 0.94993 1.02229 1.20279 0.85928 0.98533 1.03875 1.24793 1.00407 1.09029 0.94833 1.20261 0.92304 1.04669 1.00166 1.20282 0.97004 1.02438 0.95795 1.24275 0.97626 1.10746 0.97002 1.20743 0.90704 0.89881 1.00102 1.64777 1.03506 1.14885 1.40633 1.22738 0.96867 0.96616 0.91290 1.22742 0.96710 0.97900 0.98563 1.19614 0.91273 0.84796 0.84318 1.86135 1.96734 1.19066 1.37708 1.21861 1.12903 1.00995 1.24189 0.92493 1.25716 0.98774 0.95037 0.97684 1.69833 1.38692 1.04624 1.41949 0.85530 0.79489 0.78118 0.78295 1.20219 1.20643 1.19416 1.23084 0.88325 0.96522 0.98827 1.84266 0.97257 1.74014 1.11015 0.92020 0.92566 0.91861 0.91534 0.92708 0.90831 0.88681 0.82396 0.83707 0.88043 0.93847 0.94266 0.91796 0.93528 0.93639 0.78064 0.92229 0.92911 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 3 C -0.05 -0.77 5.71 29.85 0.17 -0.60 16 4 C -0.17 -3.86 5.76 24.59 0.14 -3.72 16 5 C -0.14 -3.24 10.05 21.22 0.21 -3.03 16 6 C -0.12 -3.26 10.05 21.22 0.21 -3.05 16 7 C -0.18 -5.22 5.56 24.59 0.14 -5.08 16 8 C 0.12 3.63 5.26 85.56 0.45 4.08 16 9 N -0.51 -20.19 5.26 -887.23 -4.66 -24.86 16 10 C 0.05 2.14 5.89 86.45 0.51 2.65 16 11 C -0.12 -5.79 5.26 31.48 0.17 -5.62 16 12 C 0.24 12.23 0.96 -10.28 -0.01 12.22 16 13 O -0.59 -32.09 13.09 -148.98 -1.95 -34.05 16 14 C -0.56 -30.43 8.15 25.60 0.21 -30.22 16 15 H 0.06 3.04 7.78 -2.91 -0.02 3.02 16 16 C 0.03 1.52 5.28 84.65 0.45 1.97 16 17 N -0.91 -49.64 11.02 21.45 0.24 -49.41 16 18 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.06 2.60 5.69 86.70 0.49 3.10 16 23 S 0.07 1.86 23.01 -56.49 -1.30 0.56 16 24 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 33 H 0.10 2.88 8.11 -2.39 -0.02 2.86 16 34 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 35 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.05 2.38 7.99 -2.39 -0.02 2.36 16 38 H 0.04 2.27 7.84 -2.39 -0.02 2.25 16 39 H 0.37 20.56 7.48 -74.06 -0.55 20.00 16 40 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.05 2.19 7.92 -2.39 -0.02 2.17 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -59.06 352.88 -1.18 -60.25 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.44 Total: 32.77 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.03 Total: -29.70 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -4.43 Total: -74.26 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.95 Total: -34.05 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.30 Total: 0.56 kcal Total: -59.06 -1.18 -60.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598676357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.687 kcal (2) G-P(sol) polarization free energy of solvation -59.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds