Wall clock time and date at job start Tue Mar 31 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46937 * 2 1 4 4 C 1.50709 * 109.46850 * 180.02562 * 3 2 1 5 5 C 1.33384 * 125.19990 * 89.71358 * 4 3 2 6 6 C 1.38427 * 114.91831 * 180.26572 * 5 4 3 7 7 C 1.33394 * 114.92111 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.20565 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47164 * 89.99835 * 8 7 6 10 10 C 1.47903 * 110.99869 * 69.87981 * 9 8 7 11 11 C 1.53995 * 107.05365 * 214.15626 * 10 9 8 12 12 C 1.54585 * 105.14534 * 1.21920 * 11 10 9 13 13 O 1.42900 * 110.72673 * 263.42434 * 12 11 10 14 14 C 1.50701 * 110.72844 * 140.31542 * 12 11 10 15 15 H 1.08005 * 119.99453 * 5.10955 * 14 12 11 16 16 C 1.37873 * 120.00372 * 185.10801 * 14 12 11 17 17 N 1.31520 * 119.99988 * 183.21906 * 16 14 12 18 18 Si 1.86796 * 120.00173 * 3.21678 * 16 14 12 19 19 H 1.48503 * 109.47167 * 84.79312 * 18 16 14 20 20 H 1.48493 * 109.47285 * 204.79519 * 18 16 14 21 21 H 1.48504 * 109.46967 * 324.79832 * 18 16 14 22 22 C 1.48533 * 111.00397 * 312.47791 * 9 8 7 23 23 S 1.75876 * 125.20139 * 270.02464 * 4 3 2 24 24 H 1.08997 * 109.47209 * 60.00133 * 1 2 3 25 25 H 1.08996 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46643 * 299.99728 * 1 2 3 27 27 H 1.09000 * 109.46608 * 239.99736 * 2 1 3 28 28 H 1.09004 * 109.47100 * 120.00268 * 2 1 3 29 29 H 1.08997 * 109.47232 * 60.00633 * 3 2 1 30 30 H 1.08997 * 109.47062 * 299.99956 * 3 2 1 31 31 H 1.08000 * 122.54514 * 0.24963 * 5 4 3 32 32 H 1.07999 * 122.54349 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47156 * 210.00320 * 8 7 6 34 34 H 1.09007 * 109.46934 * 330.00144 * 8 7 6 35 35 H 1.09004 * 109.91433 * 333.50102 * 10 9 8 36 36 H 1.08994 * 109.92070 * 94.80048 * 10 9 8 37 37 H 1.09003 * 110.30656 * 120.14345 * 11 10 9 38 38 H 1.09002 * 110.30334 * 242.20070 * 11 10 9 39 39 H 0.96697 * 113.99931 * 298.54351 * 13 12 11 40 40 H 0.97000 * 119.99736 * 179.97438 * 17 16 14 41 41 H 1.08999 * 110.67000 * 278.15826 * 22 9 8 42 42 H 1.09004 * 110.66417 * 41.28549 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3155 1.4372 -1.0909 6 6 5.6777 1.4325 -0.8444 7 6 6.0153 1.4335 0.4461 8 6 7.4265 1.4286 0.9749 9 7 7.8907 2.8119 1.1442 10 6 7.1846 3.4750 2.2619 11 6 7.0204 4.9569 1.8766 12 6 7.6456 5.0797 0.4681 13 8 8.9951 5.5421 0.5524 14 6 6.8237 5.9951 -0.4023 15 1 5.9793 6.5232 0.0156 16 6 7.1497 6.1586 -1.7319 17 7 6.4720 7.0053 -2.4759 18 14 8.5540 5.1774 -2.4767 19 1 8.0550 3.8460 -2.9053 20 1 9.0969 5.9044 -3.6522 21 1 9.6264 5.0017 -1.4646 22 6 7.5925 3.6250 -0.0626 23 16 4.5616 1.4416 1.4361 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9061 1.4363 -2.0903 32 1 6.4115 1.4284 -1.6368 33 1 7.4523 0.9164 1.9368 34 1 8.0769 0.9108 0.2699 35 1 6.2055 3.0180 2.4057 36 1 7.7740 3.3918 3.1749 37 1 5.9643 5.2251 1.8465 38 1 7.5515 5.5929 2.5847 39 1 9.0863 6.4188 0.9499 40 1 6.7017 7.1205 -3.4112 41 1 8.3506 3.4674 -0.8297 42 1 6.5997 3.3920 -0.4477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598676358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:10 Heat of formation + Delta-G solvation = -12.761838 kcal Electronic energy + Delta-G solvation = -22401.650794 eV Core-core repulsion = 19280.238258 eV Total energy + Delta-G solvation = -3121.412536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.18669 -37.64637 -35.51540 -34.48716 -32.31227 -31.41387 -29.46130 -28.32394 -27.00474 -24.96446 -23.53399 -22.65410 -21.49020 -20.54148 -19.60789 -18.53582 -17.31340 -16.76941 -15.62336 -15.23380 -15.04289 -14.93190 -14.56732 -13.95930 -13.87969 -13.68283 -13.32527 -12.96503 -12.80238 -12.67069 -12.35632 -12.08131 -11.70849 -11.68931 -11.54154 -11.41047 -11.29938 -11.10785 -10.96936 -10.84417 -10.69506 -10.43423 -10.36003 -10.06046 -9.87350 -8.89486 -8.63019 -8.36836 -8.21129 -8.16561 -7.88438 -6.14749 -4.24772 1.19207 1.81745 2.19143 2.98311 3.33834 3.45713 3.69877 4.48104 4.59850 4.69447 4.84894 4.93742 5.06475 5.18638 5.25096 5.30607 5.40883 5.41793 5.59262 5.62514 5.65577 5.67286 5.76503 5.85292 5.91368 5.96339 5.99086 6.02605 6.13470 6.27916 6.33720 6.40203 6.50390 6.58958 6.70695 6.75025 6.87341 7.13932 7.35998 7.51991 7.68391 8.29307 8.83136 9.07868 9.50774 10.96054 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.005405 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.418700 B = 5179.073192 C = 5839.177735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.047 4.047 4 C -0.179 4.179 5 C -0.131 4.131 6 C -0.122 4.122 7 C -0.204 4.204 8 C 0.111 3.889 9 N -0.502 5.502 10 C 0.034 3.966 11 C -0.143 4.143 12 C 0.223 3.777 13 O -0.568 6.568 14 C -0.549 4.549 15 H 0.075 0.925 16 C 0.089 3.911 17 N -0.891 5.891 18 Si 0.870 3.130 19 H -0.285 1.285 20 H -0.301 1.301 21 H -0.224 1.224 22 C 0.037 3.963 23 S 0.091 5.909 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.359 0.641 40 H 0.265 0.735 41 H 0.069 0.931 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 -13.796 6.468 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.087 4.087 4 C -0.296 4.296 5 C -0.161 4.161 6 C -0.153 4.153 7 C -0.323 4.323 8 C -0.019 4.019 9 N -0.224 5.224 10 C -0.094 4.094 11 C -0.182 4.182 12 C 0.183 3.817 13 O -0.374 6.374 14 C -0.586 4.586 15 H 0.093 0.907 16 C -0.116 4.116 17 N -0.528 5.528 18 Si 0.698 3.302 19 H -0.212 1.212 20 H -0.228 1.228 21 H -0.147 1.147 22 C -0.090 4.090 23 S 0.355 5.645 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.205 0.795 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.215 -14.329 7.705 17.416 hybrid contribution -0.178 0.200 -2.084 2.101 sum -6.393 -14.128 5.621 16.495 Atomic orbital electron populations 1.21785 0.95611 1.01627 1.01968 1.21542 0.95601 0.96013 1.02456 1.20160 0.87843 0.97420 1.03259 1.24422 0.99233 1.10108 0.95834 1.20026 0.92888 1.04008 0.99143 1.20092 0.96283 1.02897 0.96004 1.25271 0.99777 1.10392 0.96894 1.21059 0.86948 0.93104 1.00806 1.65242 1.51284 1.00492 1.05395 1.22926 0.96275 0.95589 0.94635 1.22993 1.01651 0.94237 0.99287 1.19840 0.80535 0.90697 0.90651 1.86533 1.29191 1.37066 1.84591 1.21357 1.15067 1.27542 0.94668 0.90714 1.24952 0.95638 0.94049 0.96937 1.69940 1.40576 1.34714 1.07536 0.87163 0.85160 0.79181 0.78707 1.21214 1.22826 1.14673 1.23822 1.00530 0.92851 0.91796 1.83983 0.96788 1.73590 1.10163 0.92571 0.92699 0.92673 0.91703 0.91930 0.90955 0.90078 0.84678 0.84624 0.90330 0.89170 0.94003 0.91369 0.91311 0.92047 0.79508 0.92552 0.91264 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 3 C -0.05 -0.55 5.71 -27.88 -0.16 -0.71 16 4 C -0.18 -2.56 5.76 -36.00 -0.21 -2.77 16 5 C -0.13 -2.01 10.05 -41.21 -0.41 -2.42 16 6 C -0.12 -2.02 8.04 -41.20 -0.33 -2.35 16 7 C -0.20 -3.31 4.30 -36.00 -0.15 -3.46 16 8 C 0.11 1.77 5.98 -4.98 -0.03 1.74 16 9 N -0.50 -9.65 5.54 -231.89 -1.28 -10.94 16 10 C 0.03 0.61 6.46 -2.75 -0.02 0.60 16 11 C -0.14 -2.91 6.25 -25.38 -0.16 -3.07 16 12 C 0.22 5.28 0.78 -89.91 -0.07 5.21 16 13 O -0.57 -13.35 10.46 -35.23 -0.37 -13.72 16 14 C -0.55 -15.24 8.82 -34.44 -0.30 -15.55 16 15 H 0.07 2.25 7.84 -52.48 -0.41 1.84 16 16 C 0.09 2.55 5.47 -17.82 -0.10 2.46 16 17 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 18 Si 0.87 22.21 23.87 -169.99 -4.06 18.15 16 19 H -0.29 -7.08 7.06 56.52 0.40 -6.68 16 20 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 21 H -0.22 -5.70 5.52 56.52 0.31 -5.39 16 22 C 0.04 0.82 4.01 -1.90 -0.01 0.82 16 23 S 0.09 1.32 21.45 -107.50 -2.31 -0.98 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.04 0.71 5.34 -51.93 -0.28 0.44 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.44 7.70 -51.93 -0.40 1.04 16 38 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.36 7.32 9.09 45.56 0.41 7.74 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 1.65 4.81 -51.93 -0.25 1.40 16 42 H 0.07 1.72 4.82 -51.93 -0.25 1.46 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -31.28 335.88 -9.81 -41.09 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.89 Total: 9.29 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.74 Total: -21.66 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.51 Total: -37.22 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.37 Total: -13.72 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.06 Total: 18.15 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.31 Total: -0.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.28 -9.81 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598676358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.329 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds