Wall clock time and date at job start Tue Mar 31 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46937 * 2 1 4 4 C 1.50709 * 109.46850 * 180.02562 * 3 2 1 5 5 C 1.33384 * 125.19990 * 89.71358 * 4 3 2 6 6 C 1.38427 * 114.91831 * 180.26572 * 5 4 3 7 7 C 1.33394 * 114.92111 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.20565 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47164 * 89.99835 * 8 7 6 10 10 C 1.47903 * 110.99869 * 69.87981 * 9 8 7 11 11 C 1.53995 * 107.05365 * 214.15626 * 10 9 8 12 12 C 1.54585 * 105.14534 * 1.21920 * 11 10 9 13 13 O 1.42900 * 110.72673 * 263.42434 * 12 11 10 14 14 C 1.50701 * 110.72844 * 140.31542 * 12 11 10 15 15 H 1.08005 * 119.99453 * 5.10955 * 14 12 11 16 16 C 1.37873 * 120.00372 * 185.10801 * 14 12 11 17 17 N 1.31520 * 119.99988 * 183.21906 * 16 14 12 18 18 Si 1.86796 * 120.00173 * 3.21678 * 16 14 12 19 19 H 1.48503 * 109.47167 * 84.79312 * 18 16 14 20 20 H 1.48493 * 109.47285 * 204.79519 * 18 16 14 21 21 H 1.48504 * 109.46967 * 324.79832 * 18 16 14 22 22 C 1.48533 * 111.00397 * 312.47791 * 9 8 7 23 23 S 1.75876 * 125.20139 * 270.02464 * 4 3 2 24 24 H 1.08997 * 109.47209 * 60.00133 * 1 2 3 25 25 H 1.08996 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46643 * 299.99728 * 1 2 3 27 27 H 1.09000 * 109.46608 * 239.99736 * 2 1 3 28 28 H 1.09004 * 109.47100 * 120.00268 * 2 1 3 29 29 H 1.08997 * 109.47232 * 60.00633 * 3 2 1 30 30 H 1.08997 * 109.47062 * 299.99956 * 3 2 1 31 31 H 1.08000 * 122.54514 * 0.24963 * 5 4 3 32 32 H 1.07999 * 122.54349 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47156 * 210.00320 * 8 7 6 34 34 H 1.09007 * 109.46934 * 330.00144 * 8 7 6 35 35 H 1.09004 * 109.91433 * 333.50102 * 10 9 8 36 36 H 1.08994 * 109.92070 * 94.80048 * 10 9 8 37 37 H 1.09003 * 110.30656 * 120.14345 * 11 10 9 38 38 H 1.09002 * 110.30334 * 242.20070 * 11 10 9 39 39 H 0.96697 * 113.99931 * 298.54351 * 13 12 11 40 40 H 0.97000 * 119.99736 * 179.97438 * 17 16 14 41 41 H 1.08999 * 110.67000 * 278.15826 * 22 9 8 42 42 H 1.09004 * 110.66417 * 41.28549 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3155 1.4372 -1.0909 6 6 5.6777 1.4325 -0.8444 7 6 6.0153 1.4335 0.4461 8 6 7.4265 1.4286 0.9749 9 7 7.8907 2.8119 1.1442 10 6 7.1846 3.4750 2.2619 11 6 7.0204 4.9569 1.8766 12 6 7.6456 5.0797 0.4681 13 8 8.9951 5.5421 0.5524 14 6 6.8237 5.9951 -0.4023 15 1 5.9793 6.5232 0.0156 16 6 7.1497 6.1586 -1.7319 17 7 6.4720 7.0053 -2.4759 18 14 8.5540 5.1774 -2.4767 19 1 8.0550 3.8460 -2.9053 20 1 9.0969 5.9044 -3.6522 21 1 9.6264 5.0017 -1.4646 22 6 7.5925 3.6250 -0.0626 23 16 4.5616 1.4416 1.4361 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9061 1.4363 -2.0903 32 1 6.4115 1.4284 -1.6368 33 1 7.4523 0.9164 1.9368 34 1 8.0769 0.9108 0.2699 35 1 6.2055 3.0180 2.4057 36 1 7.7740 3.3918 3.1749 37 1 5.9643 5.2251 1.8465 38 1 7.5515 5.5929 2.5847 39 1 9.0863 6.4188 0.9499 40 1 6.7017 7.1205 -3.4112 41 1 8.3506 3.4674 -0.8297 42 1 6.5997 3.3920 -0.4477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598676358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:10 Heat of formation + Delta-G solvation = -34.718955 kcal Electronic energy + Delta-G solvation = -22402.602926 eV Core-core repulsion = 19280.238258 eV Total energy + Delta-G solvation = -3122.364668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69835 -38.93644 -36.96041 -35.63869 -34.49070 -32.81976 -30.70797 -30.04241 -28.32684 -26.55952 -24.98887 -23.86304 -22.35522 -22.03555 -21.40001 -19.77514 -19.32924 -17.96051 -17.15570 -16.99237 -16.52525 -16.11642 -15.85136 -15.67197 -15.24099 -14.87504 -14.63570 -14.60290 -14.24633 -13.95277 -13.73915 -13.33826 -13.23278 -13.20274 -13.04782 -12.76104 -12.54470 -12.41898 -12.25456 -12.13789 -12.00771 -11.91597 -11.76071 -11.63615 -11.48900 -10.92787 -10.77592 -10.22932 -9.52343 -9.37781 -9.27749 -8.38520 -6.50701 0.00067 0.65724 0.99964 1.29919 1.37963 1.63975 1.76459 2.36075 2.97641 3.13379 3.64519 3.73229 3.83299 3.90802 4.04717 4.11100 4.15901 4.27301 4.37464 4.38941 4.58505 4.60691 4.67326 4.71918 4.74495 4.77217 4.82161 4.91148 4.96197 5.08200 5.15104 5.17582 5.19474 5.29200 5.32988 5.42054 5.43866 5.47424 5.57179 5.87676 6.05661 6.10567 6.60324 7.20004 7.36424 8.75994 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.005405 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.418700 B = 5179.073192 C = 5839.177735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.049 4.049 4 C -0.176 4.176 5 C -0.154 4.154 6 C -0.136 4.136 7 C -0.220 4.220 8 C 0.110 3.890 9 N -0.506 5.506 10 C 0.038 3.962 11 C -0.141 4.141 12 C 0.216 3.784 13 O -0.574 6.574 14 C -0.547 4.547 15 H 0.038 0.962 16 C 0.042 3.958 17 N -0.935 5.935 18 Si 0.927 3.073 19 H -0.277 1.277 20 H -0.304 1.304 21 H -0.220 1.220 22 C 0.044 3.956 23 S 0.110 5.890 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.371 0.629 40 H 0.266 0.734 41 H 0.055 0.945 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 -15.611 7.864 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.089 4.089 4 C -0.294 4.294 5 C -0.183 4.183 6 C -0.167 4.167 7 C -0.338 4.338 8 C -0.019 4.019 9 N -0.228 5.228 10 C -0.090 4.090 11 C -0.179 4.179 12 C 0.176 3.824 13 O -0.381 6.381 14 C -0.585 4.585 15 H 0.056 0.944 16 C -0.158 4.158 17 N -0.574 5.574 18 Si 0.754 3.246 19 H -0.203 1.203 20 H -0.232 1.232 21 H -0.142 1.142 22 C -0.083 4.083 23 S 0.374 5.626 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.063 -16.154 9.126 19.519 hybrid contribution -0.314 0.807 -2.456 2.604 sum -6.377 -15.347 6.670 17.908 Atomic orbital electron populations 1.21769 0.94225 1.02464 1.02282 1.21492 0.96733 0.94454 1.02361 1.20293 0.86008 0.98924 1.03645 1.24834 1.00637 1.08399 0.95480 1.20198 0.92772 1.05254 1.00100 1.20222 0.96795 1.03413 0.96310 1.25335 1.00534 1.10892 0.97083 1.21176 0.86904 0.91329 1.02534 1.65190 1.51953 1.01618 1.04024 1.22962 0.97359 0.93586 0.95054 1.22914 1.00684 0.96640 0.97690 1.19796 0.80160 0.90494 0.91947 1.86482 1.28608 1.38072 1.84931 1.21628 1.14250 1.27445 0.95198 0.94362 1.25646 0.97786 0.94855 0.97499 1.70055 1.42624 1.36759 1.07982 0.86263 0.82531 0.78109 0.77712 1.20293 1.23214 1.14226 1.23519 0.99369 0.92597 0.92809 1.83821 0.95933 1.73082 1.09725 0.92380 0.91624 0.92272 0.91902 0.91934 0.90415 0.89823 0.83824 0.85303 0.87730 0.88340 0.93031 0.88811 0.92688 0.90266 0.78131 0.92471 0.92680 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 3 C -0.05 -1.07 5.71 29.85 0.17 -0.89 16 4 C -0.18 -4.84 5.76 24.59 0.14 -4.70 16 5 C -0.15 -4.66 10.05 21.22 0.21 -4.45 16 6 C -0.14 -4.44 8.04 21.22 0.17 -4.27 16 7 C -0.22 -6.77 4.30 24.59 0.11 -6.67 16 8 C 0.11 3.23 5.98 85.56 0.51 3.74 16 9 N -0.51 -18.20 5.54 -887.56 -4.91 -23.11 16 10 C 0.04 1.27 6.46 86.45 0.56 1.83 16 11 C -0.14 -5.51 6.25 31.47 0.20 -5.31 16 12 C 0.22 10.07 0.78 -10.34 -0.01 10.06 16 13 O -0.57 -26.06 10.46 -148.98 -1.56 -27.62 16 14 C -0.55 -30.89 8.82 25.60 0.23 -30.66 16 15 H 0.04 2.38 7.84 -2.91 -0.02 2.36 16 16 C 0.04 2.47 5.47 84.65 0.46 2.93 16 17 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 18 Si 0.93 46.35 23.87 68.60 1.64 47.99 16 19 H -0.28 -13.30 7.06 99.48 0.70 -12.60 16 20 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 21 H -0.22 -10.75 5.52 99.48 0.55 -10.20 16 22 C 0.04 1.95 4.01 86.65 0.35 2.29 16 23 S 0.11 3.01 21.45 -56.49 -1.21 1.80 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.10 2.52 8.08 -2.39 -0.02 2.50 16 34 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.05 1.61 5.34 -2.38 -0.01 1.60 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.05 2.27 7.70 -2.39 -0.02 2.25 16 38 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 39 H 0.37 14.60 9.09 -74.06 -0.67 13.92 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.06 2.55 4.81 -2.39 -0.01 2.54 16 42 H 0.06 2.83 4.82 -2.39 -0.01 2.81 16 Total: -1.00 -66.84 335.88 -1.58 -68.42 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.18 Total: 29.66 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 3.99 Total: -39.27 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -4.61 Total: -80.99 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.56 Total: -27.62 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.64 Total: 47.99 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.21 Total: 1.80 kcal Total: -66.84 -1.58 -68.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598676358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.699 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds