Wall clock time and date at job start Tue Mar 31 2020 08:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 H 1.08999 * 109.47016 * 304.99448 * 3 2 1 5 5 C 1.50707 * 109.47353 * 184.99864 * 3 2 1 6 6 H 1.07998 * 120.00309 * 240.00001 * 5 3 2 7 7 C 1.37880 * 119.99801 * 59.99864 * 5 3 2 8 8 N 1.31518 * 119.99780 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99911 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46792 * 90.00421 * 9 7 5 11 11 H 1.48500 * 109.47081 * 210.00107 * 9 7 5 12 12 H 1.48490 * 109.47390 * 330.00402 * 9 7 5 13 13 N 1.46501 * 109.47418 * 64.99894 * 3 2 1 14 14 C 1.34773 * 120.00045 * 275.00388 * 13 3 2 15 15 O 1.21280 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.50695 * 119.99990 * 179.97438 * 14 13 3 17 17 H 1.09007 * 109.47125 * 304.99543 * 16 14 13 18 18 O 1.42901 * 109.47245 * 185.00211 * 16 14 13 19 19 C 1.42901 * 114.00287 * 150.00086 * 18 16 14 20 20 C 1.50696 * 109.47392 * 64.99961 * 16 14 13 21 21 C 1.38248 * 119.97128 * 264.99853 * 20 16 14 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 16 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.09003 * 109.46939 * 60.00260 * 1 2 3 28 28 H 1.09003 * 109.47555 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47525 * 300.00232 * 1 2 3 30 30 H 1.09004 * 109.47645 * 239.99879 * 2 1 3 31 31 H 1.08999 * 109.47305 * 120.00082 * 2 1 3 32 32 H 0.97004 * 119.99667 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99770 * 94.99626 * 13 3 2 34 34 H 1.08992 * 109.47546 * 59.99685 * 19 18 16 35 35 H 1.09000 * 109.46697 * 179.97438 * 19 18 16 36 36 H 1.08999 * 109.46613 * 299.99644 * 19 18 16 37 37 H 1.08001 * 119.98881 * 0.02562 * 21 20 16 38 38 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 40 40 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4341 16 6 0.0363 3.3377 2.6547 17 1 0.1524 2.6374 3.4820 18 8 -1.3281 3.7546 2.5717 19 6 -2.0093 3.7678 3.8278 20 6 0.9155 4.5395 2.8866 21 6 2.0430 4.4278 3.6788 22 6 2.8503 5.5290 3.8917 23 6 2.5293 6.7446 3.3118 24 9 3.3175 7.8220 3.5196 25 6 1.3967 6.8566 2.5232 26 6 0.5940 5.7526 2.3069 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0604 -2.9503 33 1 2.2719 2.1231 1.9977 34 1 -1.5044 4.4537 4.5078 35 1 -3.0383 4.0955 3.6795 36 1 -2.0050 2.7646 4.2540 37 1 2.2934 3.4794 4.1307 38 1 3.7313 5.4415 4.5102 39 1 1.1431 7.8053 2.0735 40 1 -0.2868 5.8386 1.6880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599760361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:00 Heat of formation + Delta-G solvation = -105.206604 kcal Electronic energy + Delta-G solvation = -24205.075159 eV Core-core repulsion = 20513.440741 eV Total energy + Delta-G solvation = -3691.634418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.93461 -40.08588 -38.44800 -37.25623 -34.96492 -32.61550 -31.76328 -31.17251 -30.61290 -27.79210 -26.92802 -25.47333 -23.09843 -23.04438 -21.94841 -20.33280 -19.35893 -17.79011 -17.47731 -16.93890 -16.64007 -15.81765 -15.66604 -15.58870 -15.18089 -14.65095 -14.48498 -14.26568 -13.94517 -13.60273 -13.39180 -13.26108 -12.83072 -12.68919 -12.22301 -12.15650 -11.70573 -11.44272 -11.39532 -11.25930 -11.03311 -10.97118 -10.81882 -10.33022 -10.20319 -9.93959 -9.64203 -9.18521 -9.13667 -9.05281 -8.52872 -8.45440 -7.84228 -6.13013 -4.22354 1.01568 1.19471 3.22016 3.23813 3.31108 3.32859 3.40550 3.52835 4.19923 4.29369 4.50277 4.60614 4.70196 4.82529 5.04075 5.18431 5.22098 5.28514 5.32158 5.40046 5.46720 5.60579 5.82872 5.89343 6.05104 6.18557 6.36809 6.38545 6.44968 6.65175 6.81104 7.00655 7.03670 7.20795 7.35241 7.42399 7.61246 7.71967 7.89276 8.16808 8.62418 8.76690 9.09014 9.44788 10.92322 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.005594 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.227392 B = 5004.593464 C = 6782.525385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.508 3.492 15 O -0.523 6.523 16 C 0.112 3.888 17 H 0.090 0.910 18 O -0.350 6.350 19 C 0.028 3.972 20 C -0.118 4.118 21 C -0.079 4.079 22 C -0.152 4.152 23 C 0.099 3.901 24 F -0.142 7.142 25 C -0.155 4.155 26 C -0.057 4.057 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 7.842 14.205 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.290 3.710 15 O -0.399 6.399 16 C 0.050 3.950 17 H 0.107 0.893 18 O -0.267 6.267 19 C -0.069 4.069 20 C -0.119 4.119 21 C -0.097 4.097 22 C -0.171 4.171 23 C 0.080 3.920 24 F -0.121 7.121 25 C -0.174 4.174 26 C -0.075 4.075 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.368 7.805 13.138 16.197 hybrid contribution 1.616 0.119 0.598 1.728 sum -3.752 7.924 13.736 16.296 Atomic orbital electron populations 1.21844 0.98304 0.98086 1.01277 1.21947 0.92625 0.99764 1.02343 1.18809 0.94249 0.89102 0.80721 0.93239 1.21207 0.90602 1.38997 1.06332 0.92104 1.24874 0.98550 0.94823 0.95362 1.69895 1.35106 1.37587 1.09323 0.86472 0.84939 0.78429 0.77426 1.20542 1.21061 1.19865 1.46405 1.14024 1.56000 1.18724 1.19809 0.83313 0.79665 0.88196 1.90699 1.51132 1.58716 1.39378 1.20896 0.82795 0.92983 0.98372 0.89264 1.88062 1.21455 1.87654 1.29555 1.22875 0.97582 1.00331 0.86139 1.20191 0.97005 0.95586 0.99148 1.20862 0.93341 0.98448 0.97031 1.21053 1.01683 0.91673 1.02693 1.17767 0.90870 0.83835 0.99545 1.91491 1.73216 1.53849 1.93533 1.21155 0.94929 1.00616 1.00683 1.20898 0.98957 0.90930 0.96722 0.93088 0.95798 0.94359 0.88202 0.95010 0.92547 0.78149 0.94013 0.89282 0.93851 0.84722 0.84557 0.84675 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.15 0.32 -2.74 16 2 C -0.13 -3.06 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.13 4.97 -54.93 -0.27 -14.40 16 14 C 0.51 9.94 5.73 -10.99 -0.06 9.88 16 15 O -0.52 -12.36 13.65 -14.30 -0.20 -12.56 16 16 C 0.11 1.64 2.73 -29.04 -0.08 1.56 16 17 H 0.09 1.06 7.70 -51.93 -0.40 0.66 16 18 O -0.35 -5.25 9.03 -55.09 -0.50 -5.75 16 19 C 0.03 0.28 10.81 101.05 1.09 1.37 16 20 C -0.12 -1.60 4.91 -104.62 -0.51 -2.11 16 21 C -0.08 -0.92 9.51 -39.59 -0.38 -1.29 16 22 C -0.15 -1.77 10.03 -39.52 -0.40 -2.17 16 23 C 0.10 1.27 7.30 -39.42 -0.29 0.98 16 24 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 25 C -0.16 -1.95 10.03 -39.51 -0.40 -2.34 16 26 C -0.06 -0.78 9.35 -39.59 -0.37 -1.15 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 6.70 8.37 -40.82 -0.34 6.36 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.14 1.94 7.63 -52.49 -0.40 1.54 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.86 339.28 -7.44 -38.30 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.47 Total: 6.60 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.77 Total: -7.07 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.35 Total: -38.26 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.69 Total: -18.31 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.86 -7.44 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.904 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds