Wall clock time and date at job start Tue Mar 31 2020 08:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 H 1.08999 * 109.47016 * 304.99448 * 3 2 1 5 5 C 1.50707 * 109.47353 * 184.99864 * 3 2 1 6 6 H 1.07998 * 120.00309 * 240.00001 * 5 3 2 7 7 C 1.37880 * 119.99801 * 59.99864 * 5 3 2 8 8 N 1.31518 * 119.99780 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99911 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46792 * 90.00421 * 9 7 5 11 11 H 1.48500 * 109.47081 * 210.00107 * 9 7 5 12 12 H 1.48490 * 109.47390 * 330.00402 * 9 7 5 13 13 N 1.46501 * 109.47418 * 64.99894 * 3 2 1 14 14 C 1.34773 * 120.00045 * 275.00388 * 13 3 2 15 15 O 1.21280 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.50695 * 119.99990 * 179.97438 * 14 13 3 17 17 H 1.09007 * 109.47125 * 304.99543 * 16 14 13 18 18 O 1.42901 * 109.47245 * 185.00211 * 16 14 13 19 19 C 1.42901 * 114.00287 * 150.00086 * 18 16 14 20 20 C 1.50696 * 109.47392 * 64.99961 * 16 14 13 21 21 C 1.38248 * 119.97128 * 264.99853 * 20 16 14 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 16 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.09003 * 109.46939 * 60.00260 * 1 2 3 28 28 H 1.09003 * 109.47555 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47525 * 300.00232 * 1 2 3 30 30 H 1.09004 * 109.47645 * 239.99879 * 2 1 3 31 31 H 1.08999 * 109.47305 * 120.00082 * 2 1 3 32 32 H 0.97004 * 119.99667 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99770 * 94.99626 * 13 3 2 34 34 H 1.08992 * 109.47546 * 59.99685 * 19 18 16 35 35 H 1.09000 * 109.46697 * 179.97438 * 19 18 16 36 36 H 1.08999 * 109.46613 * 299.99644 * 19 18 16 37 37 H 1.08001 * 119.98881 * 0.02562 * 21 20 16 38 38 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 40 40 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4341 16 6 0.0363 3.3377 2.6547 17 1 0.1524 2.6374 3.4820 18 8 -1.3281 3.7546 2.5717 19 6 -2.0093 3.7678 3.8278 20 6 0.9155 4.5395 2.8866 21 6 2.0430 4.4278 3.6788 22 6 2.8503 5.5290 3.8917 23 6 2.5293 6.7446 3.3118 24 9 3.3175 7.8220 3.5196 25 6 1.3967 6.8566 2.5232 26 6 0.5940 5.7526 2.3069 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0604 -2.9503 33 1 2.2719 2.1231 1.9977 34 1 -1.5044 4.4537 4.5078 35 1 -3.0383 4.0955 3.6795 36 1 -2.0050 2.7646 4.2540 37 1 2.2934 3.4794 4.1307 38 1 3.7313 5.4415 4.5102 39 1 1.1431 7.8053 2.0735 40 1 -0.2868 5.8386 1.6880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599760361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:59 Heat of formation + Delta-G solvation = -123.728516 kcal Electronic energy + Delta-G solvation = -24205.878329 eV Core-core repulsion = 20513.440741 eV Total energy + Delta-G solvation = -3692.437588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.92496 -41.34947 -39.76326 -38.37967 -36.79063 -34.36958 -33.28644 -32.13533 -32.10454 -29.23454 -28.33523 -26.60436 -24.91928 -24.02407 -23.14467 -21.92163 -21.10117 -19.14240 -18.73298 -18.05978 -17.74544 -17.49663 -16.99545 -16.63968 -16.59850 -16.16887 -15.78774 -15.57008 -15.26046 -14.67395 -14.55751 -14.47620 -14.32181 -14.01991 -13.59034 -13.51744 -13.26341 -13.13268 -12.90787 -12.74052 -12.62514 -12.34134 -12.16064 -12.04955 -11.93216 -11.56574 -11.05837 -11.01715 -10.58942 -10.47057 -10.08795 -9.68043 -9.53770 -8.14218 -6.31116 0.02167 0.25575 1.45417 1.46722 1.56395 1.77458 2.11580 2.44667 2.52264 3.15188 3.23420 3.25921 3.54780 3.76714 3.92801 3.98667 4.06298 4.32258 4.43469 4.51340 4.55770 4.58945 4.59394 4.78261 4.87781 4.91407 4.94867 5.08077 5.11942 5.21025 5.27923 5.40737 5.45709 5.57766 5.63177 5.80596 5.86386 5.91600 6.12857 6.19294 6.76659 6.98650 7.35485 7.57509 8.91112 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.005594 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.227392 B = 5004.593464 C = 6782.525385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.696 5.696 14 C 0.502 3.498 15 O -0.571 6.571 16 C 0.126 3.874 17 H 0.126 0.874 18 O -0.381 6.381 19 C 0.022 3.978 20 C -0.129 4.129 21 C -0.073 4.073 22 C -0.149 4.149 23 C 0.087 3.913 24 F -0.146 7.146 25 C -0.160 4.160 26 C -0.072 4.072 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 7.767 16.897 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.288 3.712 15 O -0.451 6.451 16 C 0.064 3.936 17 H 0.143 0.857 18 O -0.299 6.299 19 C -0.074 4.074 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.168 4.168 23 C 0.068 3.932 24 F -0.125 7.125 25 C -0.178 4.178 26 C -0.091 4.091 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.165 0.835 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.128 7.745 15.885 18.149 hybrid contribution 1.163 0.200 -0.236 1.203 sum -2.965 7.946 15.650 17.800 Atomic orbital electron populations 1.21681 0.97088 0.99167 1.00179 1.21789 0.93609 0.99049 1.01538 1.18368 0.93654 0.89146 0.81113 0.98729 1.21550 0.91287 1.38692 1.06669 0.90926 1.25736 1.03071 0.94495 0.95071 1.70054 1.36975 1.38465 1.09869 0.85420 0.79429 0.78895 0.77056 1.19475 1.21539 1.19016 1.46113 1.14935 1.55872 1.17730 1.20719 0.82246 0.78677 0.89584 1.90678 1.52418 1.60259 1.41702 1.20696 0.83211 0.93802 0.95881 0.85698 1.88027 1.21661 1.87788 1.32426 1.23114 0.97878 1.01722 0.84697 1.20191 0.97762 0.94856 1.00218 1.21183 0.92049 0.99779 0.96104 1.21374 1.02252 0.90950 1.02208 1.17988 0.90939 0.84343 0.99950 1.91482 1.73259 1.54143 1.93580 1.21280 0.94893 1.00923 1.00750 1.20903 0.99121 0.91775 0.97253 0.95883 0.93460 0.93731 0.91031 0.93559 0.92670 0.76183 0.92473 0.88183 0.92395 0.81573 0.82078 0.83496 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.67 16 3 C 0.28 14.11 2.24 44.25 0.10 14.21 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.33 16 5 C -0.54 -28.11 8.73 25.60 0.22 -27.89 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.92 -52.00 11.29 21.45 0.24 -51.76 16 9 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.70 -27.55 4.97 -446.10 -2.22 -29.77 16 14 C 0.50 19.55 5.73 87.66 0.50 20.06 16 15 O -0.57 -27.85 13.65 15.96 0.22 -27.63 16 16 C 0.13 3.46 2.73 29.10 0.08 3.54 16 17 H 0.13 2.50 7.70 -2.38 -0.02 2.48 16 18 O -0.38 -11.04 9.03 -129.99 -1.17 -12.21 16 19 C 0.02 0.40 10.81 113.37 1.23 1.62 16 20 C -0.13 -3.24 4.91 -19.86 -0.10 -3.34 16 21 C -0.07 -1.46 9.51 22.26 0.21 -1.25 16 22 C -0.15 -3.01 10.03 22.31 0.22 -2.79 16 23 C 0.09 2.06 7.30 22.38 0.16 2.23 16 24 F -0.15 -3.59 17.27 44.97 0.78 -2.81 16 25 C -0.16 -3.87 10.03 22.31 0.22 -3.65 16 26 C -0.07 -1.93 9.35 22.26 0.21 -1.72 16 27 H 0.02 1.11 7.85 -2.39 -0.02 1.10 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.91 5.65 -2.39 -0.01 1.89 16 30 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.40 13.10 8.37 -92.71 -0.78 12.32 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 37 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.13 3.65 7.63 -2.91 -0.02 3.62 16 Total: -1.00 -69.15 339.28 4.44 -64.71 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.28 Total: 24.10 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 4.29 Total: -8.25 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.98 Total: -81.53 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.96 Total: -39.84 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -69.15 4.44 -64.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.022 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds