Wall clock time and date at job start Tue Mar 31 2020 08:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47154 * 54.99150 * 16 14 13 18 18 O 1.42905 * 109.47336 * 174.99703 * 16 14 13 19 19 C 1.42896 * 113.99803 * 269.99529 * 18 16 14 20 20 C 1.50706 * 109.46565 * 294.99407 * 16 14 13 21 21 C 1.38239 * 119.97610 * 279.71754 * 20 16 14 22 22 C 1.38200 * 120.02537 * 179.76561 * 21 20 16 23 23 C 1.38456 * 119.97144 * 0.51687 * 22 21 20 24 24 F 1.35106 * 120.02410 * 179.76350 * 23 22 21 25 25 C 1.38461 * 119.95377 * 359.74352 * 23 22 21 26 26 C 1.38204 * 119.96950 * 359.97438 * 25 23 22 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.09002 * 109.47328 * 60.00035 * 19 18 16 35 35 H 1.08998 * 109.47134 * 179.97438 * 19 18 16 36 36 H 1.08996 * 109.47475 * 300.00207 * 19 18 16 37 37 H 1.08003 * 119.98457 * 0.03057 * 21 20 16 38 38 H 1.07996 * 120.01121 * 180.26145 * 22 21 20 39 39 H 1.07995 * 120.01484 * 179.97438 * 25 23 22 40 40 H 1.07998 * 119.98573 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.1527 2.6375 -3.4821 18 8 -1.3279 3.7547 -2.5718 19 6 -2.2640 2.7733 -3.0217 20 6 0.9158 4.5395 -2.8866 21 6 0.6502 5.7266 -2.2301 22 6 1.4588 6.8279 -2.4382 23 6 2.5289 6.7449 -3.3128 24 9 3.3172 7.8222 -3.5206 25 6 2.7909 5.5569 -3.9740 26 6 1.9843 4.4552 -3.7598 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8288 -0.0530 2.9544 33 1 2.2721 2.1230 -1.9977 34 1 -2.1655 1.8725 -2.4159 35 1 -3.2762 3.1660 -2.9262 36 1 -2.0643 2.5324 -4.0658 37 1 -0.1871 5.7922 -1.5510 38 1 1.2535 7.7540 -1.9219 39 1 3.6250 5.4912 -4.6567 40 1 2.1886 3.5283 -4.2751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599760365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:08 Heat of formation + Delta-G solvation = -106.622788 kcal Electronic energy + Delta-G solvation = -24237.149511 eV Core-core repulsion = 20545.453683 eV Total energy + Delta-G solvation = -3691.695828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.91217 -40.06896 -38.47780 -37.16245 -34.94303 -32.64604 -31.82541 -31.17055 -30.66164 -27.57678 -26.93274 -25.53034 -23.07108 -23.04936 -21.96041 -20.34258 -19.37018 -17.76746 -17.53254 -16.90489 -16.56106 -15.86026 -15.65245 -15.58058 -15.17714 -14.57145 -14.44392 -14.26464 -13.90069 -13.58044 -13.35764 -13.26055 -12.86420 -12.72155 -12.20266 -12.08866 -11.65265 -11.51588 -11.29489 -11.22894 -11.00881 -10.94643 -10.83932 -10.38704 -10.24517 -10.20909 -9.66014 -9.13372 -9.06631 -9.03882 -8.53652 -8.39504 -7.84951 -6.14198 -4.23342 1.03631 1.22178 3.19902 3.22497 3.30842 3.33319 3.45963 3.65695 4.21567 4.22081 4.39895 4.66083 4.73070 4.84970 5.04669 5.17551 5.23749 5.33380 5.40348 5.46275 5.54755 5.74684 5.84150 5.92513 6.06843 6.20803 6.34340 6.39802 6.40371 6.60860 6.82523 6.98172 7.03744 7.17334 7.32643 7.41140 7.59667 7.70329 7.87930 8.15214 8.62029 8.75762 9.07854 9.43984 10.91237 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.005793 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.350799 B = 4832.444878 C = 6733.142307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.484 3.516 15 O -0.529 6.529 16 C 0.112 3.888 17 H 0.088 0.912 18 O -0.356 6.356 19 C 0.031 3.969 20 C -0.091 4.091 21 C -0.054 4.054 22 C -0.155 4.155 23 C 0.100 3.900 24 F -0.142 7.142 25 C -0.152 4.152 26 C -0.078 4.078 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 6.815 -13.406 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.267 3.733 15 O -0.407 6.407 16 C 0.051 3.949 17 H 0.106 0.894 18 O -0.273 6.273 19 C -0.065 4.065 20 C -0.092 4.092 21 C -0.072 4.072 22 C -0.173 4.173 23 C 0.080 3.920 24 F -0.121 7.121 25 C -0.171 4.171 26 C -0.096 4.096 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.608 6.909 -12.460 15.312 hybrid contribution 1.521 -0.155 -0.320 1.562 sum -4.087 6.754 -12.780 15.022 Atomic orbital electron populations 1.21838 0.98431 0.98009 1.01106 1.21939 0.92524 0.99834 1.02327 1.18796 0.94284 0.89086 0.80923 0.93309 1.21255 0.90658 1.38994 1.06162 0.92046 1.24880 0.98569 0.94823 0.95374 1.69903 1.35036 1.37768 1.09260 0.86423 0.84927 0.77762 0.78184 1.19723 1.20872 1.20864 1.46490 1.14334 1.55711 1.18600 1.20705 0.83399 0.79810 0.89409 1.90690 1.51331 1.59077 1.39567 1.20849 0.83335 0.93866 0.96879 0.89387 1.87933 1.13361 1.39693 1.86325 1.22834 0.93083 0.92977 0.97610 1.19488 0.96577 0.94636 0.98493 1.20906 0.98171 0.90996 0.97120 1.21152 0.95568 1.00682 0.99926 1.17760 0.91365 0.84030 0.98807 1.91491 1.73001 1.53762 1.93825 1.21029 1.01843 0.91941 1.02308 1.20816 0.93676 0.98380 0.96722 0.95808 0.93091 0.94581 0.95023 0.88230 0.92613 0.78135 0.93302 0.89360 0.94200 0.84247 0.84623 0.84499 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.67 2.24 -69.09 -0.15 6.51 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.82 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -24.48 11.30 55.43 0.63 -23.86 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -14.06 4.97 -54.94 -0.27 -14.34 16 14 C 0.48 9.30 5.68 -10.99 -0.06 9.24 16 15 O -0.53 -12.16 13.64 -14.31 -0.20 -12.35 16 16 C 0.11 1.65 2.72 -29.03 -0.08 1.58 16 17 H 0.09 1.05 7.65 -51.93 -0.40 0.65 16 18 O -0.36 -5.37 9.20 -55.09 -0.51 -5.87 16 19 C 0.03 0.37 10.81 101.05 1.09 1.47 16 20 C -0.09 -1.26 4.92 -104.62 -0.52 -1.77 16 21 C -0.05 -0.76 9.35 -39.60 -0.37 -1.13 16 22 C -0.15 -1.98 10.03 -39.51 -0.40 -2.38 16 23 C 0.10 1.29 7.30 -39.42 -0.29 1.00 16 24 F -0.14 -1.87 17.27 2.25 0.04 -1.84 16 25 C -0.15 -1.78 10.03 -39.51 -0.40 -2.17 16 26 C -0.08 -0.91 9.67 -39.59 -0.38 -1.29 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 29 H 0.04 0.75 5.64 -51.93 -0.29 0.45 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.39 6.73 8.54 -40.82 -0.35 6.39 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.14 2.01 7.77 -52.48 -0.41 1.60 16 38 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.14 1.21 8.04 -52.49 -0.42 0.79 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -30.55 339.82 -7.46 -38.02 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.48 Total: 6.87 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.78 Total: -7.22 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.35 Total: -38.19 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.70 Total: -18.23 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.55 -7.46 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.608 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds