Wall clock time and date at job start Tue Mar 31 2020 08:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47154 * 54.99150 * 16 14 13 18 18 O 1.42905 * 109.47336 * 174.99703 * 16 14 13 19 19 C 1.42896 * 113.99803 * 269.99529 * 18 16 14 20 20 C 1.50706 * 109.46565 * 294.99407 * 16 14 13 21 21 C 1.38239 * 119.97610 * 279.71754 * 20 16 14 22 22 C 1.38200 * 120.02537 * 179.76561 * 21 20 16 23 23 C 1.38456 * 119.97144 * 0.51687 * 22 21 20 24 24 F 1.35106 * 120.02410 * 179.76350 * 23 22 21 25 25 C 1.38461 * 119.95377 * 359.74352 * 23 22 21 26 26 C 1.38204 * 119.96950 * 359.97438 * 25 23 22 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.09002 * 109.47328 * 60.00035 * 19 18 16 35 35 H 1.08998 * 109.47134 * 179.97438 * 19 18 16 36 36 H 1.08996 * 109.47475 * 300.00207 * 19 18 16 37 37 H 1.08003 * 119.98457 * 0.03057 * 21 20 16 38 38 H 1.07996 * 120.01121 * 180.26145 * 22 21 20 39 39 H 1.07995 * 120.01484 * 179.97438 * 25 23 22 40 40 H 1.07998 * 119.98573 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.1527 2.6375 -3.4821 18 8 -1.3279 3.7547 -2.5718 19 6 -2.2640 2.7733 -3.0217 20 6 0.9158 4.5395 -2.8866 21 6 0.6502 5.7266 -2.2301 22 6 1.4588 6.8279 -2.4382 23 6 2.5289 6.7449 -3.3128 24 9 3.3172 7.8222 -3.5206 25 6 2.7909 5.5569 -3.9740 26 6 1.9843 4.4552 -3.7598 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8288 -0.0530 2.9544 33 1 2.2721 2.1230 -1.9977 34 1 -2.1655 1.8725 -2.4159 35 1 -3.2762 3.1660 -2.9262 36 1 -2.0643 2.5324 -4.0658 37 1 -0.1871 5.7922 -1.5510 38 1 1.2535 7.7540 -1.9219 39 1 3.6250 5.4912 -4.6567 40 1 2.1886 3.5283 -4.2751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599760365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:07 Heat of formation + Delta-G solvation = -124.873959 kcal Electronic energy + Delta-G solvation = -24237.940941 eV Core-core repulsion = 20545.453683 eV Total energy + Delta-G solvation = -3692.487258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91103 -41.36438 -39.72496 -38.38612 -36.74585 -34.37589 -33.33921 -32.20043 -32.11971 -29.18092 -28.20295 -26.77101 -24.90971 -24.01988 -23.14969 -21.93543 -21.09294 -19.19575 -18.70855 -18.05579 -17.73054 -17.54428 -16.99595 -16.63867 -16.58370 -16.12157 -15.85015 -15.49687 -15.27209 -14.67680 -14.58675 -14.47584 -14.32005 -14.02418 -13.61888 -13.51824 -13.26841 -13.15801 -12.88206 -12.71708 -12.57423 -12.31782 -12.14744 -12.04849 -11.91944 -11.61020 -11.48558 -11.03061 -10.56204 -10.32154 -10.07296 -9.66814 -9.51829 -8.15495 -6.32209 0.03007 0.26995 1.43448 1.45514 1.56432 1.75883 2.28464 2.46220 2.48363 3.03600 3.14423 3.25356 3.61315 3.77471 3.92218 4.02077 4.03831 4.32914 4.44714 4.48734 4.51864 4.55650 4.60195 4.76384 4.85951 4.91505 4.95963 5.06749 5.12805 5.21245 5.26409 5.41673 5.44386 5.57054 5.63211 5.79704 5.86347 5.91163 6.06965 6.18389 6.76256 6.98858 7.34686 7.57422 8.89988 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.005793 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.350799 B = 4832.444878 C = 6733.142307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.543 4.543 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.697 5.697 14 C 0.480 3.520 15 O -0.574 6.574 16 C 0.125 3.875 17 H 0.127 0.873 18 O -0.375 6.375 19 C 0.025 3.975 20 C -0.106 4.106 21 C -0.072 4.072 22 C -0.161 4.161 23 C 0.088 3.912 24 F -0.145 7.145 25 C -0.148 4.148 26 C -0.071 4.071 27 H 0.046 0.954 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.030 0.970 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 6.649 -16.201 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.347 5.347 14 C 0.266 3.734 15 O -0.454 6.454 16 C 0.064 3.936 17 H 0.144 0.856 18 O -0.292 6.292 19 C -0.071 4.071 20 C -0.107 4.107 21 C -0.091 4.091 22 C -0.179 4.179 23 C 0.069 3.931 24 F -0.124 7.124 25 C -0.167 4.167 26 C -0.089 4.089 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.049 0.951 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.407 6.757 -15.303 17.299 hybrid contribution 1.084 -0.053 0.559 1.221 sum -3.323 6.704 -14.744 16.534 Atomic orbital electron populations 1.21674 0.97038 0.99140 1.00135 1.21778 0.93676 0.99035 1.01453 1.18351 0.93609 0.89171 0.81302 0.98841 1.21596 0.91406 1.38661 1.06463 0.90987 1.25737 1.03056 0.94515 0.95104 1.70058 1.36910 1.38633 1.09814 0.85387 0.79496 0.77840 0.78176 1.18324 1.21356 1.20353 1.46217 1.15274 1.55691 1.17568 1.21623 0.82298 0.78771 0.90719 1.90672 1.52501 1.60449 1.41750 1.20774 0.83455 0.94617 0.94785 0.85602 1.87935 1.13848 1.40753 1.86693 1.23048 0.93336 0.91771 0.98964 1.19567 0.97476 0.93995 0.99633 1.20903 0.98442 0.92023 0.97686 1.21269 0.95587 1.00890 1.00192 1.17979 0.91383 0.84585 0.99177 1.91483 1.73023 1.54049 1.93856 1.21376 1.02249 0.91117 1.01918 1.21166 0.92198 0.99726 0.95760 0.93472 0.95916 0.93674 0.93609 0.91161 0.92687 0.76253 0.95124 0.87877 0.91019 0.85745 0.83547 0.81794 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.52 71.98 0.61 -4.76 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 14.00 2.24 44.25 0.10 14.10 16 4 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 5 C -0.54 -28.13 8.73 25.60 0.22 -27.90 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.84 5.30 84.66 0.45 1.29 16 8 N -0.92 -52.06 11.30 21.45 0.24 -51.81 16 9 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.70 -27.44 4.97 -446.12 -2.22 -29.66 16 14 C 0.48 18.32 5.68 87.66 0.50 18.82 16 15 O -0.57 -27.15 13.64 15.94 0.22 -26.93 16 16 C 0.13 3.45 2.72 29.10 0.08 3.52 16 17 H 0.13 2.49 7.65 -2.39 -0.02 2.47 16 18 O -0.37 -10.87 9.20 -129.99 -1.20 -12.07 16 19 C 0.02 0.54 10.81 113.37 1.23 1.77 16 20 C -0.11 -2.72 4.92 -19.86 -0.10 -2.82 16 21 C -0.07 -2.01 9.35 22.26 0.21 -1.80 16 22 C -0.16 -4.02 10.03 22.31 0.22 -3.79 16 23 C 0.09 2.11 7.30 22.37 0.16 2.27 16 24 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 25 C -0.15 -2.97 10.03 22.31 0.22 -2.74 16 26 C -0.07 -1.40 9.67 22.26 0.22 -1.19 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 29 H 0.04 1.87 5.64 -2.39 -0.01 1.85 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 3.81 5.96 -2.39 -0.01 3.80 16 32 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 33 H 0.40 13.13 8.54 -92.71 -0.79 12.34 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 37 H 0.12 3.74 7.77 -2.91 -0.02 3.72 16 38 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.17 2.14 8.04 -2.91 -0.02 2.11 16 Total: -1.00 -68.61 339.82 4.40 -64.21 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.26 Total: 24.21 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 4.29 Total: -8.84 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.98 Total: -81.48 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.98 Total: -39.00 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -68.61 4.40 -64.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.662 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds