Wall clock time and date at job start Tue Mar 31 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 C 1.50707 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.33814 * 124.52292 * 89.72002 * 4 3 2 6 6 C 1.37471 * 115.10076 * 179.85178 * 5 4 3 7 7 C 1.36653 * 113.29763 * 0.42784 * 6 5 4 8 8 C 1.46577 * 125.45838 * 179.80546 * 7 6 5 9 9 O 1.21704 * 120.00164 * 352.13506 * 8 7 6 10 10 N 1.34782 * 119.99759 * 172.13291 * 8 7 6 11 11 C 1.46495 * 119.99928 * 1.91528 * 10 8 7 12 12 C 1.50705 * 109.47155 * 82.14983 * 11 10 8 13 13 H 1.07994 * 119.99705 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99748 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00613 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47160 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47311 * 119.99761 * 16 14 12 19 19 H 1.48502 * 109.47134 * 239.99728 * 16 14 12 20 20 C 1.46501 * 119.99547 * 181.91441 * 10 8 7 21 21 C 1.52998 * 109.46711 * 114.96297 * 20 10 8 22 22 C 1.53007 * 109.46713 * 234.95775 * 20 10 8 23 23 S 1.70616 * 124.51844 * 270.02379 * 4 3 2 24 24 H 1.09005 * 109.47092 * 60.00192 * 1 2 3 25 25 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47432 * 299.99932 * 1 2 3 27 27 H 1.08998 * 109.47432 * 240.00068 * 2 1 3 28 28 H 1.09005 * 109.47092 * 119.99808 * 2 1 3 29 29 H 1.08996 * 109.47344 * 60.00038 * 3 2 1 30 30 H 1.08996 * 109.46899 * 299.99756 * 3 2 1 31 31 H 1.08000 * 122.44909 * 0.02562 * 5 4 3 32 32 H 1.08001 * 123.35381 * 180.19671 * 6 5 4 33 33 H 1.09001 * 109.47219 * 202.15046 * 11 10 8 34 34 H 1.09003 * 109.47480 * 322.14693 * 11 10 8 35 35 H 0.96997 * 120.00624 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.47704 * 354.95908 * 20 10 8 37 37 H 1.09002 * 109.47512 * 60.00002 * 21 20 10 38 38 H 1.08997 * 109.46891 * 179.97438 * 21 20 10 39 39 H 1.08996 * 109.47056 * 299.99302 * 21 20 10 40 40 H 1.08995 * 109.46641 * 60.00696 * 22 20 10 41 41 H 1.09005 * 109.46525 * 180.02562 * 22 20 10 42 42 H 1.09001 * 109.47047 * 300.00147 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3059 1.4370 -1.1015 6 6 5.6619 1.4413 -0.8759 7 6 5.9891 1.4413 0.4509 8 6 7.3519 1.4413 0.9906 9 8 8.3021 1.2972 0.2440 10 7 7.5526 1.6011 2.3138 11 6 6.4073 1.7325 3.2177 12 6 5.8693 0.3644 3.5492 13 1 6.3338 -0.5150 3.1282 14 6 4.7842 0.2355 4.3898 15 7 4.2188 1.3064 4.9029 16 14 4.1177 -1.4604 4.8012 17 1 4.9254 -2.4925 4.1030 18 1 4.1953 -1.6804 6.2678 19 1 2.7028 -1.5565 4.3605 20 6 8.9161 1.6431 2.8479 21 6 9.1910 3.0287 3.4357 22 6 9.0677 0.5854 3.9430 23 16 4.5133 1.4421 1.4068 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.8838 1.4324 -2.0956 32 1 6.3957 1.4408 -1.6684 33 1 6.7233 2.2306 4.1344 34 1 5.6284 2.3219 2.7340 35 1 3.4556 1.2157 5.4947 36 1 9.6267 1.4409 2.0466 37 1 8.4804 3.2310 4.2371 38 1 10.2053 3.0599 3.8335 39 1 9.0830 3.7822 2.6556 40 1 8.8719 -0.4017 3.5242 41 1 10.0821 0.6170 4.3407 42 1 8.3571 0.7877 4.7444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:13 Heat of formation + Delta-G solvation = -25.973962 kcal Electronic energy + Delta-G solvation = -22442.888399 eV Core-core repulsion = 19320.902942 eV Total energy + Delta-G solvation = -3121.985457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.21331 -37.34220 -35.69682 -34.42541 -33.30293 -31.59653 -29.53950 -27.49931 -26.62177 -26.26901 -23.34136 -23.18255 -21.53666 -21.07413 -19.11629 -17.65497 -17.31159 -16.71401 -15.62476 -15.28212 -14.65764 -14.43338 -14.37180 -14.08436 -13.50553 -13.36440 -12.95646 -12.73638 -12.55895 -12.46562 -12.31889 -12.01218 -11.81700 -11.66685 -11.60986 -11.20153 -11.11488 -11.03875 -10.90017 -10.86757 -10.77299 -10.48549 -10.41729 -10.05357 -9.81797 -9.19600 -9.07387 -8.77253 -8.00348 -7.70431 -7.46418 -6.36931 -4.38078 1.39786 2.58336 3.02478 3.13002 3.14904 3.22387 3.27455 3.87390 4.05805 4.21835 4.97268 5.11384 5.19467 5.28384 5.34473 5.65203 5.66596 5.67195 5.75977 5.79935 5.94308 5.98349 6.05498 6.08484 6.12570 6.12992 6.27874 6.34636 6.36923 6.38516 6.49039 6.57564 6.68000 6.76229 6.92395 6.97851 6.99360 7.19576 7.46309 7.60437 7.78759 8.24271 8.63047 8.99400 9.21853 10.67195 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.007470 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.959788 B = 3747.337149 C = 5314.257089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.041 4.041 4 C -0.296 4.296 5 C -0.170 4.170 6 C -0.081 4.081 7 C -0.295 4.295 8 C 0.591 3.409 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.227 3.773 12 C -0.530 4.530 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.877 5.877 16 Si 0.886 3.114 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.278 1.278 20 C 0.138 3.862 21 C -0.159 4.159 22 C -0.152 4.152 23 S 0.402 5.598 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.269 0.731 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 1.231 -3.784 4.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.080 4.080 4 C -0.416 4.416 5 C -0.200 4.200 6 C -0.116 4.116 7 C -0.416 4.416 8 C 0.380 3.620 9 O -0.454 6.454 10 N -0.323 5.323 11 C 0.104 3.896 12 C -0.572 4.572 13 H 0.087 0.913 14 C -0.130 4.130 15 N -0.513 5.513 16 Si 0.713 3.287 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.203 1.203 20 C 0.034 3.966 21 C -0.217 4.217 22 C -0.210 4.210 23 S 0.680 5.320 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.378 1.255 -2.494 3.668 hybrid contribution -0.258 -0.963 -1.324 1.657 sum -2.636 0.292 -3.818 4.649 Atomic orbital electron populations 1.21779 0.96009 1.01414 1.01609 1.21562 0.95230 0.96535 1.02607 1.20017 0.88880 0.96993 1.02132 1.25756 1.01920 1.08963 1.04940 1.19545 0.92553 1.09522 0.98398 1.20348 0.95638 1.00803 0.94827 1.24670 0.98432 1.20011 0.98499 1.17057 0.86931 0.75987 0.82014 1.90679 1.42791 1.53258 1.58710 1.48108 1.07786 1.70000 1.06366 1.19620 0.82357 0.97835 0.89788 1.21544 1.14235 0.92633 1.28792 0.91268 1.24880 0.96074 0.97111 0.94908 1.69911 1.22317 1.28231 1.30871 0.86579 0.79301 0.84261 0.78555 1.19260 1.20558 1.20326 1.20872 0.84187 0.94954 0.96596 1.22143 1.01352 0.96960 1.01264 1.22058 1.00785 0.98942 0.99189 1.85987 0.89782 1.58962 0.97282 0.92960 0.92899 0.92665 0.91949 0.91585 0.91306 0.91434 0.86520 0.84944 0.92795 0.94278 0.92107 0.89341 0.91905 0.92181 0.92905 0.92488 0.93070 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 16 3 C -0.04 -0.62 5.65 -27.88 -0.16 -0.78 16 4 C -0.30 -5.33 5.53 -35.86 -0.20 -5.53 16 5 C -0.17 -3.01 9.99 -41.41 -0.41 -3.43 16 6 C -0.08 -1.60 10.02 -40.43 -0.41 -2.00 16 7 C -0.29 -6.35 6.23 -36.79 -0.23 -6.58 16 8 C 0.59 13.49 7.56 -12.90 -0.10 13.39 16 9 O -0.57 -13.96 16.19 5.19 0.08 -13.88 16 10 N -0.59 -12.64 2.38 -169.04 -0.40 -13.04 16 11 C 0.23 5.06 3.87 -5.19 -0.02 5.04 16 12 C -0.53 -12.55 6.15 -34.44 -0.21 -12.77 16 13 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.08 1.81 5.01 -17.82 -0.09 1.72 16 15 N -0.88 -21.44 13.29 55.43 0.74 -20.70 16 16 Si 0.89 19.18 29.54 -169.99 -5.02 14.16 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.14 2.54 3.22 -67.93 -0.22 2.32 16 21 C -0.16 -2.51 9.26 37.16 0.34 -2.17 16 22 C -0.15 -2.62 8.69 37.16 0.32 -2.30 16 23 S 0.40 8.28 15.79 -107.50 -1.70 6.58 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.13 2.47 8.06 -52.49 -0.42 2.04 16 33 H 0.05 1.24 6.45 -51.93 -0.34 0.91 16 34 H 0.04 0.93 4.51 -22.41 -0.10 0.82 16 35 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 36 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 37 H 0.06 1.02 6.93 -51.93 -0.36 0.66 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -26.12 349.20 -8.77 -34.89 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.56 Total: 3.05 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.16 Total: -16.31 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.33 Total: -33.75 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.88 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 16 Polarization: 8.28 SS G_CDS: -1.70 Total: 6.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.12 -8.77 -34.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.913 kcal (2) G-P(sol) polarization free energy of solvation -26.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds