Wall clock time and date at job start Tue Mar 31 2020 06:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 C 1.50707 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.33814 * 124.52292 * 89.72002 * 4 3 2 6 6 C 1.37471 * 115.10076 * 179.85178 * 5 4 3 7 7 C 1.36653 * 113.29763 * 0.42784 * 6 5 4 8 8 C 1.46577 * 125.45838 * 179.80546 * 7 6 5 9 9 O 1.21704 * 120.00164 * 352.13506 * 8 7 6 10 10 N 1.34782 * 119.99759 * 172.13291 * 8 7 6 11 11 C 1.46495 * 119.99928 * 1.91528 * 10 8 7 12 12 C 1.50705 * 109.47155 * 82.14983 * 11 10 8 13 13 H 1.07994 * 119.99705 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99748 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00613 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47160 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47311 * 119.99761 * 16 14 12 19 19 H 1.48502 * 109.47134 * 239.99728 * 16 14 12 20 20 C 1.46501 * 119.99547 * 181.91441 * 10 8 7 21 21 C 1.52998 * 109.46711 * 114.96297 * 20 10 8 22 22 C 1.53007 * 109.46713 * 234.95775 * 20 10 8 23 23 S 1.70616 * 124.51844 * 270.02379 * 4 3 2 24 24 H 1.09005 * 109.47092 * 60.00192 * 1 2 3 25 25 H 1.09003 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47432 * 299.99932 * 1 2 3 27 27 H 1.08998 * 109.47432 * 240.00068 * 2 1 3 28 28 H 1.09005 * 109.47092 * 119.99808 * 2 1 3 29 29 H 1.08996 * 109.47344 * 60.00038 * 3 2 1 30 30 H 1.08996 * 109.46899 * 299.99756 * 3 2 1 31 31 H 1.08000 * 122.44909 * 0.02562 * 5 4 3 32 32 H 1.08001 * 123.35381 * 180.19671 * 6 5 4 33 33 H 1.09001 * 109.47219 * 202.15046 * 11 10 8 34 34 H 1.09003 * 109.47480 * 322.14693 * 11 10 8 35 35 H 0.96997 * 120.00624 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.47704 * 354.95908 * 20 10 8 37 37 H 1.09002 * 109.47512 * 60.00002 * 21 20 10 38 38 H 1.08997 * 109.46891 * 179.97438 * 21 20 10 39 39 H 1.08996 * 109.47056 * 299.99302 * 21 20 10 40 40 H 1.08995 * 109.46641 * 60.00696 * 22 20 10 41 41 H 1.09005 * 109.46525 * 180.02562 * 22 20 10 42 42 H 1.09001 * 109.47047 * 300.00147 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3059 1.4370 -1.1015 6 6 5.6619 1.4413 -0.8759 7 6 5.9891 1.4413 0.4509 8 6 7.3519 1.4413 0.9906 9 8 8.3021 1.2972 0.2440 10 7 7.5526 1.6011 2.3138 11 6 6.4073 1.7325 3.2177 12 6 5.8693 0.3644 3.5492 13 1 6.3338 -0.5150 3.1282 14 6 4.7842 0.2355 4.3898 15 7 4.2188 1.3064 4.9029 16 14 4.1177 -1.4604 4.8012 17 1 4.9254 -2.4925 4.1030 18 1 4.1953 -1.6804 6.2678 19 1 2.7028 -1.5565 4.3605 20 6 8.9161 1.6431 2.8479 21 6 9.1910 3.0287 3.4357 22 6 9.0677 0.5854 3.9430 23 16 4.5133 1.4421 1.4068 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.8838 1.4324 -2.0956 32 1 6.3957 1.4408 -1.6684 33 1 6.7233 2.2306 4.1344 34 1 5.6284 2.3219 2.7340 35 1 3.4556 1.2157 5.4947 36 1 9.6267 1.4409 2.0466 37 1 8.4804 3.2310 4.2371 38 1 10.2053 3.0599 3.8335 39 1 9.0830 3.7822 2.6556 40 1 8.8719 -0.4017 3.5242 41 1 10.0821 0.6170 4.3407 42 1 8.3571 0.7877 4.7444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601027767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:12 Heat of formation + Delta-G solvation = -37.388821 kcal Electronic energy + Delta-G solvation = -22443.383384 eV Core-core repulsion = 19320.902942 eV Total energy + Delta-G solvation = -3122.480442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91227 -38.81687 -37.35759 -35.68402 -35.03879 -33.22690 -30.86576 -29.29943 -27.99327 -27.63965 -25.10213 -24.62541 -23.03414 -22.26789 -20.64698 -19.24917 -18.98699 -18.53944 -17.24985 -16.74912 -16.37857 -16.04577 -15.74728 -15.53922 -14.89141 -14.61610 -14.53410 -14.26572 -14.14467 -13.96818 -13.81717 -13.40402 -13.25566 -13.07748 -12.97129 -12.76283 -12.71337 -12.47754 -12.30272 -12.21783 -12.13369 -12.01787 -11.66718 -11.59536 -11.56765 -10.95849 -10.64768 -10.57120 -9.67870 -9.26719 -9.09610 -8.20984 -6.26065 -0.17684 0.98666 1.36749 1.44737 1.51616 1.52021 1.61008 2.23183 2.37466 2.44599 3.11237 3.77593 3.90552 4.10388 4.14060 4.21381 4.25262 4.40199 4.46318 4.62556 4.64392 4.69329 4.80541 4.81024 4.83868 4.88379 4.97113 4.98702 5.03535 5.10066 5.18496 5.22347 5.32268 5.36825 5.42376 5.46048 5.49169 5.67126 5.73284 5.85428 5.96325 6.48513 6.76575 7.23765 7.37141 8.83285 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.007470 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.959788 B = 3747.337149 C = 5314.257089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.043 4.043 4 C -0.277 4.277 5 C -0.169 4.169 6 C -0.074 4.074 7 C -0.325 4.325 8 C 0.581 3.419 9 O -0.598 6.598 10 N -0.592 5.592 11 C 0.238 3.762 12 C -0.529 4.529 13 H 0.048 0.952 14 C 0.052 3.948 15 N -0.895 5.895 16 Si 0.926 3.074 17 H -0.277 1.277 18 H -0.276 1.276 19 H -0.272 1.272 20 C 0.127 3.873 21 C -0.149 4.149 22 C -0.141 4.141 23 S 0.357 5.643 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.272 0.728 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 1.297 -4.583 5.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.081 4.081 4 C -0.397 4.397 5 C -0.198 4.198 6 C -0.110 4.110 7 C -0.446 4.446 8 C 0.371 3.629 9 O -0.483 6.483 10 N -0.322 5.322 11 C 0.115 3.885 12 C -0.571 4.571 13 H 0.067 0.933 14 C -0.152 4.152 15 N -0.533 5.533 16 Si 0.752 3.248 17 H -0.202 1.202 18 H -0.201 1.201 19 H -0.197 1.197 20 C 0.024 3.976 21 C -0.207 4.207 22 C -0.199 4.199 23 S 0.633 5.367 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.460 1.321 -3.258 4.933 hybrid contribution 0.061 -0.972 -1.188 1.536 sum -3.399 0.350 -4.445 5.607 Atomic orbital electron populations 1.21748 0.93831 1.02315 1.02483 1.21546 0.97140 0.95484 1.01683 1.20171 0.86545 0.98005 1.03428 1.25993 1.03429 1.06847 1.03412 1.19819 0.91580 1.08550 0.99865 1.20657 0.96904 0.99149 0.94261 1.24713 0.98045 1.22404 0.99412 1.17359 0.87375 0.75814 0.82347 1.90640 1.43613 1.54868 1.59225 1.48220 1.08719 1.69252 1.05978 1.19411 0.82582 0.97092 0.89396 1.21392 1.14407 0.92343 1.28913 0.93331 1.25237 0.96099 0.99013 0.94821 1.69952 1.22738 1.29190 1.31399 0.85971 0.78907 0.81588 0.78324 1.20161 1.20133 1.19706 1.21157 0.82637 0.97068 0.96736 1.22066 1.03122 0.94810 1.00720 1.21965 1.02492 0.97366 0.98099 1.85999 0.90629 1.60718 0.99325 0.91156 0.92059 0.92732 0.91512 0.93939 0.91397 0.88696 0.83158 0.84169 0.93671 0.94650 0.91869 0.90108 0.92506 0.88898 0.93365 0.94410 0.89499 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.12 -3.12 5.92 30.59 0.18 -2.94 16 3 C -0.04 -1.18 5.65 29.85 0.17 -1.01 16 4 C -0.28 -9.51 5.53 24.68 0.14 -9.37 16 5 C -0.17 -5.60 9.99 21.08 0.21 -5.39 16 6 C -0.07 -2.84 10.02 21.72 0.22 -2.63 16 7 C -0.32 -14.16 6.23 24.08 0.15 -14.01 16 8 C 0.58 27.18 7.56 86.42 0.65 27.84 16 9 O -0.60 -29.88 16.19 -4.36 -0.07 -29.95 16 10 N -0.59 -25.92 2.38 -806.92 -1.92 -27.84 16 11 C 0.24 10.92 3.87 85.64 0.33 11.25 16 12 C -0.53 -25.67 6.15 25.60 0.16 -25.52 16 13 H 0.05 2.53 7.81 -2.91 -0.02 2.50 16 14 C 0.05 2.51 5.01 84.65 0.42 2.93 16 15 N -0.90 -44.04 13.29 21.45 0.28 -43.76 16 16 Si 0.93 39.35 29.54 68.60 2.03 41.38 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 C 0.13 4.71 3.22 44.99 0.14 4.85 16 21 C -0.15 -4.59 9.26 71.98 0.67 -3.92 16 22 C -0.14 -4.87 8.69 71.98 0.63 -4.25 16 23 S 0.36 14.79 15.79 -56.49 -0.89 13.90 16 24 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 33 H 0.05 2.14 6.45 -2.39 -0.02 2.12 16 34 H 0.04 1.73 4.51 -21.15 -0.10 1.63 16 35 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 36 H 0.08 3.13 6.91 -2.39 -0.02 3.12 16 37 H 0.06 1.81 6.93 -2.39 -0.02 1.80 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.06 2.18 7.10 -2.39 -0.02 2.16 16 Total: -1.00 -56.42 349.20 5.12 -51.30 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.91 Total: 19.38 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.78 Total: -24.42 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.63 Total: -71.60 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.07 Total: -29.95 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 14.79 SS G_CDS: -0.89 Total: 13.90 kcal Total: -56.42 5.12 -51.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.914 kcal (2) G-P(sol) polarization free energy of solvation -56.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds