Wall clock time and date at job start Tue Mar 31 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 124.51986 * 2 1 4 4 C 1.37477 * 115.09687 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47376 * 299.99712 * 11 10 9 13 13 C 1.53001 * 109.47408 * 59.99751 * 11 10 9 14 14 C 1.53007 * 109.47187 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47348 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99783 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00087 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99641 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00062 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47271 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47334 * 119.99868 * 19 17 15 22 22 H 1.48500 * 109.46882 * 239.99413 * 19 17 15 23 23 S 1.70619 * 124.52256 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46870 * 89.99852 * 1 2 3 25 25 H 1.09002 * 109.47428 * 210.00095 * 1 2 3 26 26 H 1.09003 * 109.47368 * 330.00270 * 1 2 3 27 27 H 1.07996 * 122.45496 * 0.04065 * 3 2 1 28 28 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 31 31 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 33 33 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 34 34 H 1.09000 * 109.46522 * 60.00041 * 12 11 10 35 35 H 1.08991 * 109.47353 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.47177 * 300.00673 * 12 11 10 37 37 H 1.09005 * 109.46947 * 59.99924 * 13 11 10 38 38 H 1.09000 * 109.47028 * 179.97438 * 13 11 10 39 39 H 1.08994 * 109.47407 * 300.00037 * 13 11 10 40 40 H 1.08992 * 109.46978 * 300.00225 * 14 11 10 41 41 H 1.09003 * 109.46579 * 59.99809 * 14 11 10 42 42 H 0.97002 * 119.99087 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9882 -0.0134 8 8 6.2658 -0.2320 -0.0153 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8603 -0.0257 11 6 6.8155 -4.3893 -0.0290 12 6 6.0820 -4.8753 1.2227 13 6 6.0699 -4.8695 -1.2757 14 6 8.2382 -4.9522 -0.0378 15 6 8.1827 -6.4581 -0.0404 16 1 7.2281 -6.9633 -0.0358 17 6 9.3505 -7.1910 -0.0476 18 7 10.5129 -6.5758 -0.0527 19 14 9.2816 -9.0577 -0.0515 20 1 7.8643 -9.5009 -0.0452 21 1 9.9572 -9.5755 -1.2684 22 1 9.9688 -9.5809 1.1565 23 16 2.4740 -1.4057 -0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.8429 2.0965 0.0006 28 1 4.8925 2.2503 1.0263 29 1 4.2380 2.8549 -0.5146 30 1 5.5446 1.6461 -0.5158 31 1 4.7495 -2.9242 -0.0161 32 1 7.3945 -2.5138 -0.9172 33 1 7.4029 -2.5187 0.8627 34 1 5.0684 -4.4744 1.2285 35 1 6.0422 -5.9645 1.2206 36 1 6.6131 -4.5332 2.1109 37 1 6.5924 -4.5233 -2.1675 38 1 6.0301 -5.9588 -1.2783 39 1 5.0563 -4.4686 -1.2700 40 1 8.7604 -4.6059 -0.9296 41 1 8.7697 -4.6100 0.8503 42 1 11.3344 -7.0915 -0.0581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601580254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:11 Heat of formation + Delta-G solvation = -52.401612 kcal Electronic energy + Delta-G solvation = -21348.034953 eV Core-core repulsion = 18224.903507 eV Total energy + Delta-G solvation = -3123.131446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07658 -39.36102 -38.38375 -35.29976 -34.01081 -33.57673 -29.84669 -29.06021 -28.63002 -27.99865 -27.07377 -24.87834 -22.98085 -22.34385 -20.65791 -19.35867 -18.70242 -18.36793 -17.09594 -16.74371 -16.56728 -16.35852 -15.59491 -15.45231 -14.90463 -14.84547 -14.67830 -14.39941 -14.06053 -13.95828 -13.94531 -13.74510 -13.71155 -12.90486 -12.80690 -12.69934 -12.63931 -12.61029 -12.51067 -12.36902 -12.25038 -11.97082 -11.79346 -11.57120 -11.18070 -10.92172 -10.82188 -10.52021 -10.22821 -9.57384 -9.38281 -8.13927 -6.21658 -0.50777 0.47438 0.89787 1.36533 1.42142 1.43225 1.54989 2.11614 2.13449 2.45135 3.20789 3.76152 3.79669 3.96209 4.04673 4.18589 4.20975 4.27536 4.55699 4.64584 4.65868 4.68182 4.74630 4.75215 4.78084 4.92060 4.99684 5.06008 5.08956 5.09452 5.18808 5.30932 5.40496 5.42990 5.48034 5.50045 5.54059 5.56276 5.78013 5.89535 6.29723 6.44446 6.93401 7.10572 7.46141 8.98898 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.003193 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.330948 B = 8766.936406 C = 9508.290523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.179 4.179 3 C -0.167 4.167 4 C -0.020 4.020 5 C -0.105 4.105 6 C -0.315 4.315 7 C 0.582 3.418 8 O -0.570 6.570 9 N -0.709 5.709 10 C 0.142 3.858 11 C -0.066 4.066 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.041 3.959 15 C -0.512 4.512 16 H 0.074 0.926 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.959 3.041 20 H -0.256 1.256 21 H -0.285 1.285 22 H -0.285 1.285 23 S 0.216 5.784 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.168 0.832 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.406 0.594 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.064 0.936 40 H -0.013 1.013 41 H -0.013 1.013 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.167 13.204 0.100 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.299 4.299 3 C -0.196 4.196 4 C -0.036 4.036 5 C -0.163 4.163 6 C -0.434 4.434 7 C 0.370 3.630 8 O -0.452 6.452 9 N -0.361 5.361 10 C 0.019 3.981 11 C -0.066 4.066 12 C -0.180 4.180 13 C -0.180 4.180 14 C 0.004 3.996 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.784 3.216 20 H -0.180 1.180 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.485 5.515 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.186 0.814 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.244 0.756 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.648 12.081 0.100 26.555 hybrid contribution 1.119 0.369 0.007 1.178 sum -22.529 12.450 0.108 25.740 Atomic orbital electron populations 1.20577 0.84791 1.04851 1.04368 1.24675 1.03058 0.97024 1.05175 1.20018 0.90970 1.01101 1.07541 1.19779 0.96012 0.93100 0.94661 1.20715 0.97137 0.95455 1.03026 1.24264 0.96763 0.98697 1.23705 1.17361 0.87585 0.82202 0.75814 1.90744 1.43513 1.58521 1.52420 1.45881 1.09555 1.06020 1.74608 1.21290 0.82285 0.93981 1.00590 1.20737 0.97688 0.91077 0.97143 1.21704 0.98699 1.01792 0.95784 1.21705 0.98639 1.01810 0.95829 1.18959 0.90771 0.95424 0.94491 1.21616 0.92661 0.92118 1.48642 0.90844 1.25950 0.95353 1.03439 0.95471 1.70136 0.98036 1.37182 1.52643 0.85484 0.78774 0.80063 0.77252 1.17963 1.21073 1.21083 1.82846 0.92642 1.07517 1.68500 0.88963 0.90027 0.88604 0.81439 0.90639 0.89189 0.91606 0.75649 0.93137 0.93143 0.91736 0.92140 0.94211 0.94208 0.92141 0.91737 0.99430 0.99446 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.31 71.24 0.73 0.07 16 2 C -0.18 -2.68 6.28 24.68 0.15 -2.53 16 3 C -0.17 -2.81 9.82 21.08 0.21 -2.60 16 4 C -0.02 -0.46 5.90 -20.42 -0.12 -0.58 16 5 C -0.11 -2.38 9.56 71.24 0.68 -1.70 16 6 C -0.31 -8.26 6.45 24.08 0.16 -8.10 16 7 C 0.58 19.25 7.78 86.42 0.67 19.92 16 8 O -0.57 -22.74 14.24 -4.34 -0.06 -22.80 16 9 N -0.71 -22.03 4.95 -467.18 -2.31 -24.35 16 10 C 0.14 5.33 4.56 86.38 0.39 5.72 16 11 C -0.07 -2.56 0.54 -52.18 -0.03 -2.59 16 12 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 13 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 14 C 0.04 2.11 4.04 29.85 0.12 2.23 16 15 C -0.51 -27.49 7.65 25.60 0.20 -27.30 16 16 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 19 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 S 0.22 3.95 22.10 -56.49 -1.25 2.70 16 24 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.91 6.00 -2.38 -0.01 1.89 16 31 H 0.41 10.52 5.28 -92.70 -0.49 10.03 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 35 H 0.06 2.20 6.62 -2.39 -0.02 2.18 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.06 2.20 6.62 -2.39 -0.02 2.18 16 39 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -69.39 349.72 4.00 -65.39 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.53 Total: 14.98 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.79 Total: -24.60 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -2.03 Total: -81.33 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.80 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.25 Total: 2.70 kcal Total: -69.39 4.00 -65.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601580254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.988 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds