Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00233 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47008 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47585 * 300.00041 * 12 11 10 14 14 C 1.53008 * 109.47210 * 60.00233 * 12 11 10 15 15 C 1.50701 * 109.47131 * 179.97438 * 12 11 10 16 16 H 1.08002 * 119.99884 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00053 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00271 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00044 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46940 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47247 * 119.99792 * 19 17 15 22 22 H 1.48497 * 109.47157 * 239.99992 * 19 17 15 23 23 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 32 32 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 33 33 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 34 34 H 1.08996 * 109.47124 * 299.99869 * 11 10 8 35 35 H 1.09002 * 109.46842 * 60.00015 * 11 10 8 36 36 H 1.09001 * 109.46849 * 60.00341 * 13 12 11 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 12 11 38 38 H 1.08997 * 109.47057 * 299.99850 * 13 12 11 39 39 H 1.09004 * 109.46909 * 59.99391 * 14 12 11 40 40 H 1.08990 * 109.47020 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46595 * 299.99691 * 14 12 11 42 42 H 0.96996 * 120.00368 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 6 8.9108 1.4409 2.8632 12 6 8.8538 1.4423 4.3921 13 6 8.1149 2.6924 4.8739 14 6 8.1131 0.1939 4.8760 15 6 10.2549 1.4411 4.9470 16 1 11.1014 1.4399 4.2762 17 6 10.4562 1.4414 6.3110 18 7 9.4254 1.4423 7.1278 19 14 12.1929 1.4407 6.9989 20 1 13.1687 1.4391 5.8794 21 1 12.3961 2.6533 7.8315 22 1 12.3947 0.2284 7.8324 23 16 4.5134 1.4419 1.4068 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8838 1.4322 -2.0957 32 1 6.3957 1.4406 -1.6686 33 1 6.7884 1.4422 2.9262 34 1 9.4373 0.5505 2.5196 35 1 9.4383 2.3305 2.5188 36 1 7.1015 2.6928 4.4726 37 1 8.0740 2.6931 5.9632 38 1 8.6426 3.5817 4.5293 39 1 8.6395 -0.6967 4.5327 40 1 8.0729 0.1947 5.9651 41 1 7.0997 0.1944 4.4746 42 1 9.5670 1.4430 8.0874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601623817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -32.619521 kcal Electronic energy + Delta-G solvation = -21130.745576 eV Core-core repulsion = 18008.471946 eV Total energy + Delta-G solvation = -3122.273630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.42019 -38.04207 -36.34225 -35.05070 -33.32174 -31.08245 -30.31559 -27.31122 -25.73806 -25.54486 -24.86741 -23.67132 -21.73384 -21.19737 -19.32647 -18.62111 -17.88523 -16.25065 -15.88913 -15.34480 -15.09938 -14.88197 -14.81011 -14.38508 -14.01515 -13.62734 -13.21609 -12.98989 -12.93591 -12.72559 -12.38767 -12.20642 -11.98363 -11.70416 -11.50244 -11.37793 -11.22741 -11.09477 -10.88745 -10.83703 -10.66649 -10.40313 -10.21490 -9.73401 -9.65143 -9.31731 -8.79506 -8.76438 -8.63263 -8.45010 -8.31557 -6.02807 -4.12829 0.52670 1.43454 1.86747 2.40455 3.27140 3.35726 3.40185 3.52246 3.67596 4.39725 4.40633 4.63872 4.72236 5.04004 5.12424 5.17401 5.24106 5.30353 5.39413 5.45880 5.50474 5.72956 5.79278 5.93728 5.96582 6.09209 6.24883 6.30516 6.33391 6.49349 6.74110 6.81316 6.91766 6.97105 7.00521 7.33675 7.54481 7.68759 7.97006 7.99619 8.13248 8.36907 8.59145 8.87947 9.53075 10.98780 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.003188 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.821405 B = 8781.479282 C = 9489.010609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.201 4.201 5 C -0.152 4.152 6 C -0.063 4.063 7 C -0.255 4.255 8 C 0.578 3.422 9 O -0.541 6.541 10 N -0.711 5.711 11 C 0.131 3.869 12 C 0.055 3.945 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.505 4.505 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 S 0.203 5.797 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.395 0.605 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.005 0.995 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.005 0.995 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 -0.790 -11.861 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.321 4.321 5 C -0.183 4.183 6 C -0.095 4.095 7 C -0.376 4.376 8 C 0.363 3.637 9 O -0.421 6.421 10 N -0.361 5.361 11 C 0.009 3.991 12 C 0.055 3.945 13 C -0.190 4.190 14 C -0.189 4.189 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.471 5.529 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.231 0.769 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.024 0.976 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.928 -0.786 -10.594 19.985 hybrid contribution 0.848 0.010 -0.913 1.246 sum -16.080 -0.776 -11.507 19.788 Atomic orbital electron populations 1.21778 0.95368 1.01934 1.01916 1.21573 0.95876 0.95626 1.02876 1.20228 0.87235 0.98000 1.03450 1.24229 1.01014 1.08823 0.97999 1.19913 0.92605 1.06371 0.99374 1.20714 0.96048 0.97534 0.95240 1.24826 0.97275 1.17451 0.98001 1.17016 0.86408 0.77341 0.82955 1.90791 1.41728 1.51290 1.58299 1.46239 1.11314 1.73142 1.05400 1.21797 0.79699 1.00814 0.96754 1.18376 0.96246 0.92902 0.87021 1.21844 0.95022 0.97611 1.04477 1.21845 0.95007 0.97604 1.04492 1.21011 0.90958 1.50760 0.91609 0.92312 1.24881 0.96915 0.94778 0.96957 1.69809 1.29055 1.50643 1.02931 0.86507 0.84784 0.77522 0.79026 1.19753 1.21056 1.21062 1.83156 0.94417 1.67896 1.07455 0.92555 0.92648 0.92468 0.91512 0.91563 0.90612 0.89942 0.84161 0.83124 0.76912 0.92370 0.92372 0.97603 0.89459 0.95313 0.95327 0.89445 0.97611 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.53 16 2 C -0.12 -0.87 5.92 -26.74 -0.16 -1.03 16 3 C -0.05 -0.38 5.64 -27.88 -0.16 -0.54 16 4 C -0.20 -2.09 5.53 -35.86 -0.20 -2.28 16 5 C -0.15 -1.63 10.00 -41.41 -0.41 -2.05 16 6 C -0.06 -0.83 10.01 -40.43 -0.40 -1.24 16 7 C -0.25 -3.88 6.45 -36.79 -0.24 -4.12 16 8 C 0.58 10.91 7.78 -12.90 -0.10 10.81 16 9 O -0.54 -11.89 16.84 5.19 0.09 -11.80 16 10 N -0.71 -13.48 4.95 -61.66 -0.31 -13.79 16 11 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 12 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 13 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 14 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 15 C -0.50 -13.25 8.01 -34.44 -0.28 -13.52 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -23.56 9.35 55.43 0.52 -23.04 16 19 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 S 0.20 2.46 22.10 -107.50 -2.38 0.08 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.94 8.06 -52.48 -0.42 1.51 16 33 H 0.40 6.91 5.28 -40.82 -0.22 6.69 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.00 0.10 6.86 -51.93 -0.36 -0.25 16 37 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 2.18 6.07 -51.93 -0.31 1.87 16 41 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 42 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -28.59 352.54 -9.55 -38.14 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.60 Total: 3.59 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.17 Total: -14.20 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.21 Total: -36.83 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.38 Total: 0.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.59 -9.55 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.519 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds