Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00233 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47008 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47585 * 300.00041 * 12 11 10 14 14 C 1.53008 * 109.47210 * 60.00233 * 12 11 10 15 15 C 1.50701 * 109.47131 * 179.97438 * 12 11 10 16 16 H 1.08002 * 119.99884 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00053 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00271 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00044 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46940 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47247 * 119.99792 * 19 17 15 22 22 H 1.48497 * 109.47157 * 239.99992 * 19 17 15 23 23 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 32 32 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 33 33 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 34 34 H 1.08996 * 109.47124 * 299.99869 * 11 10 8 35 35 H 1.09002 * 109.46842 * 60.00015 * 11 10 8 36 36 H 1.09001 * 109.46849 * 60.00341 * 13 12 11 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 12 11 38 38 H 1.08997 * 109.47057 * 299.99850 * 13 12 11 39 39 H 1.09004 * 109.46909 * 59.99391 * 14 12 11 40 40 H 1.08990 * 109.47020 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46595 * 299.99691 * 14 12 11 42 42 H 0.96996 * 120.00368 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 6 8.9108 1.4409 2.8632 12 6 8.8538 1.4423 4.3921 13 6 8.1149 2.6924 4.8739 14 6 8.1131 0.1939 4.8760 15 6 10.2549 1.4411 4.9470 16 1 11.1014 1.4399 4.2762 17 6 10.4562 1.4414 6.3110 18 7 9.4254 1.4423 7.1278 19 14 12.1929 1.4407 6.9989 20 1 13.1687 1.4391 5.8794 21 1 12.3961 2.6533 7.8315 22 1 12.3947 0.2284 7.8324 23 16 4.5134 1.4419 1.4068 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8838 1.4322 -2.0957 32 1 6.3957 1.4406 -1.6686 33 1 6.7884 1.4422 2.9262 34 1 9.4373 0.5505 2.5196 35 1 9.4383 2.3305 2.5188 36 1 7.1015 2.6928 4.4726 37 1 8.0740 2.6931 5.9632 38 1 8.6426 3.5817 4.5293 39 1 8.6395 -0.6967 4.5327 40 1 8.0729 0.1947 5.9651 41 1 7.0997 0.1944 4.4746 42 1 9.5670 1.4430 8.0874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601623817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -47.147026 kcal Electronic energy + Delta-G solvation = -21131.375535 eV Core-core repulsion = 18008.471946 eV Total energy + Delta-G solvation = -3122.903590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88607 -39.06804 -38.06573 -35.74748 -35.08062 -32.86714 -31.26361 -28.41280 -27.60468 -27.38042 -26.40002 -24.62370 -22.54019 -22.31725 -20.81402 -20.19092 -19.05503 -17.82531 -17.28553 -16.73342 -16.54242 -16.40889 -15.86340 -15.61727 -14.89305 -14.87215 -14.72792 -14.46526 -14.16586 -14.03939 -13.53729 -13.35817 -13.19857 -13.14139 -12.72345 -12.71415 -12.57891 -12.34408 -12.28853 -12.14837 -12.04914 -11.89238 -11.52673 -11.49311 -11.37178 -11.09840 -10.72667 -10.42322 -10.14718 -9.62683 -9.54524 -8.03447 -6.19297 -0.51060 0.44881 0.91536 1.39535 1.41494 1.45545 1.55064 2.17062 2.19279 2.47809 3.20258 3.68144 3.82998 4.08664 4.18338 4.30503 4.37287 4.44257 4.45841 4.63807 4.66282 4.74814 4.86877 4.92844 4.98795 5.00826 5.02816 5.08293 5.15006 5.18522 5.25387 5.27345 5.31395 5.44327 5.48089 5.49365 5.63500 5.66226 6.10766 6.17458 6.40696 6.49234 6.84143 7.11075 7.48462 8.96109 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.003188 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.821405 B = 8781.479282 C = 9489.010609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.179 4.179 5 C -0.158 4.158 6 C -0.051 4.051 7 C -0.302 4.302 8 C 0.578 3.422 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.146 3.854 12 C 0.051 3.949 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.528 4.528 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.947 3.053 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.281 1.281 23 S 0.216 5.784 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.149 0.851 33 H 0.404 0.596 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.742 -0.714 -12.671 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.299 4.299 5 C -0.188 4.188 6 C -0.085 4.085 7 C -0.422 4.422 8 C 0.366 3.634 9 O -0.465 6.465 10 N -0.358 5.358 11 C 0.023 3.977 12 C 0.051 3.949 13 C -0.180 4.180 14 C -0.180 4.180 15 C -0.566 4.566 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.774 3.226 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.207 1.207 23 S 0.484 5.516 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.189 0.811 32 H 0.167 0.833 33 H 0.240 0.760 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.398 -0.710 -11.389 22.505 hybrid contribution 1.483 -0.020 -0.725 1.650 sum -17.915 -0.730 -12.113 21.638 Atomic orbital electron populations 1.21762 0.94242 1.02289 1.02513 1.21562 0.96835 0.95019 1.02452 1.20403 0.84951 0.98701 1.04949 1.24680 1.02368 1.05859 0.96957 1.20120 0.91285 1.06386 1.00972 1.20952 0.97441 0.95603 0.94488 1.24482 0.96514 1.21839 0.99325 1.17472 0.87706 0.75894 0.82300 1.90753 1.43612 1.53170 1.59012 1.46049 1.10277 1.73553 1.05918 1.21391 0.81144 0.99416 0.95760 1.18371 0.95236 0.93514 0.87818 1.21692 0.96381 0.96892 1.03028 1.21691 0.96360 0.96883 1.03037 1.21265 0.92063 1.51343 0.91957 0.93601 1.25458 0.99895 0.94597 0.97182 1.69905 1.30209 1.50624 1.03037 0.85673 0.81194 0.77551 0.78180 1.20042 1.20661 1.20676 1.83062 0.92967 1.67670 1.07876 0.92304 0.91725 0.92309 0.91518 0.92515 0.89731 0.87848 0.81149 0.83346 0.75952 0.93845 0.93838 0.94925 0.91503 0.96057 0.96090 0.91493 0.94941 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.36 5.92 30.59 0.18 -1.17 16 3 C -0.05 -0.59 5.64 29.85 0.17 -0.42 16 4 C -0.18 -3.15 5.53 24.68 0.14 -3.02 16 5 C -0.16 -2.93 10.00 21.08 0.21 -2.72 16 6 C -0.05 -1.28 10.01 21.72 0.22 -1.06 16 7 C -0.30 -8.99 6.45 24.07 0.16 -8.83 16 8 C 0.58 22.12 7.78 86.42 0.67 22.79 16 9 O -0.58 -26.38 16.84 -4.34 -0.07 -26.45 16 10 N -0.71 -26.96 4.95 -467.19 -2.31 -29.28 16 11 C 0.15 6.52 4.50 86.38 0.39 6.91 16 12 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 13 C -0.12 -5.56 8.08 71.98 0.58 -4.97 16 14 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 15 C -0.53 -28.21 8.01 25.60 0.21 -28.01 16 16 H 0.05 2.51 7.74 -2.91 -0.02 2.48 16 17 C 0.03 1.51 5.15 84.65 0.44 1.94 16 18 N -0.90 -48.01 9.35 21.45 0.20 -47.81 16 19 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 S 0.22 4.83 22.10 -56.49 -1.25 3.58 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.40 13.81 5.28 -92.70 -0.49 13.32 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 37 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 3.34 6.07 -2.39 -0.01 3.33 16 41 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 42 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -62.08 352.54 3.73 -58.35 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.52 Total: 18.51 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.62 Total: -21.73 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.11 Total: -77.09 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.07 Total: -26.45 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.25 Total: 3.58 kcal Total: -62.08 3.73 -58.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.203 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds