Wall clock time and date at job start Tue Mar 31 2020 08:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 H 1.09003 * 109.47259 * 305.55073 * 3 2 1 5 5 O 1.42902 * 109.47210 * 65.54515 * 3 2 1 6 6 C 1.42894 * 114.00212 * 209.39936 * 5 3 2 7 7 C 1.50700 * 109.47240 * 185.54940 * 3 2 1 8 8 O 1.21286 * 119.99503 * 245.00300 * 7 3 2 9 9 N 1.34768 * 120.00073 * 64.99808 * 7 3 2 10 10 C 1.37121 * 120.00366 * 0.02562 * 9 7 3 11 11 H 1.08008 * 119.99660 * 359.72655 * 10 9 7 12 12 C 1.38877 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.31428 * 120.00410 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46912 * 89.99962 * 14 12 10 16 16 H 1.48494 * 109.47393 * 210.00482 * 14 12 10 17 17 H 1.48505 * 109.47126 * 330.00380 * 14 12 10 18 18 C 1.39838 * 119.99975 * 180.02562 * 9 7 3 19 19 C 1.38986 * 120.05119 * 269.72345 * 18 9 7 20 20 C 1.38040 * 119.94596 * 179.72174 * 19 18 9 21 21 C 1.38550 * 120.05401 * 0.57830 * 20 19 18 22 22 F 1.35093 * 119.94642 * 179.71992 * 21 20 19 23 23 C 1.38496 * 120.10143 * 359.69767 * 21 20 19 24 24 C 1.38087 * 120.05273 * 0.02562 * 23 21 20 25 25 C 1.50706 * 120.02497 * 180.02562 * 24 23 21 26 26 H 1.09009 * 109.46952 * 174.89893 * 1 2 3 27 27 H 1.09005 * 109.46877 * 294.89558 * 1 2 3 28 28 H 1.08995 * 109.47244 * 54.89841 * 1 2 3 29 29 H 1.09000 * 109.46830 * 240.00007 * 2 1 3 30 30 H 1.08999 * 109.47121 * 120.00099 * 2 1 3 31 31 H 1.09005 * 109.47257 * 64.84822 * 6 5 3 32 32 H 1.09005 * 109.47213 * 184.84718 * 6 5 3 33 33 H 1.08999 * 109.47402 * 304.84632 * 6 5 3 34 34 H 0.96997 * 120.00256 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.02481 * 0.02562 * 19 18 9 36 36 H 1.07998 * 119.97785 * 180.29434 * 20 19 18 37 37 H 1.08001 * 119.97305 * 180.02562 * 23 21 20 38 38 H 1.08996 * 109.46496 * 270.01669 * 25 24 23 39 39 H 1.09001 * 109.47150 * 30.01338 * 25 24 23 40 40 H 1.08994 * 109.47198 * 150.02104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 8 1.6729 2.0775 1.2264 6 6 1.4790 3.4888 1.1149 7 6 3.5407 1.4447 -0.1374 8 8 4.2320 1.8586 0.7692 9 7 4.1146 0.9868 -1.2675 10 6 3.3331 0.5193 -2.2926 11 1 2.2577 0.5140 -2.1926 12 6 3.9245 0.0480 -3.4574 13 7 5.2333 0.0494 -3.5771 14 14 2.8598 -0.5896 -4.8537 15 1 2.5250 0.5289 -5.7713 16 1 3.5991 -1.6386 -5.6007 17 1 1.6086 -1.1659 -4.2987 18 6 5.5072 0.9885 -1.3948 19 6 6.1555 2.0932 -1.9342 20 6 7.5307 2.0948 -2.0535 21 6 8.2638 0.9915 -1.6471 22 9 9.6091 0.9932 -1.7701 23 6 7.6194 -0.1128 -1.1147 24 6 6.2444 -0.1167 -0.9881 25 6 5.5439 -1.3184 -0.4080 26 1 -0.3633 -1.0237 -0.0914 27 1 -0.3633 0.4326 0.9322 28 1 -0.3633 0.5909 -0.8407 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6276 3.6883 0.4641 32 1 1.2875 3.9085 2.1025 33 1 2.3739 3.9464 0.6930 34 1 5.6463 -0.2801 -4.3905 35 1 5.5842 2.9516 -2.2551 36 1 8.0354 2.9549 -2.4681 37 1 8.1929 -0.9715 -0.7982 38 1 5.2899 -2.0125 -1.2091 39 1 6.2023 -1.8131 0.3062 40 1 4.6331 -0.9989 0.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602385541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:12 Heat of formation + Delta-G solvation = -89.767911 kcal Electronic energy + Delta-G solvation = -25236.139872 eV Core-core repulsion = 21545.174926 eV Total energy + Delta-G solvation = -3690.964946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.05223 -39.85154 -38.06966 -36.38974 -34.81644 -33.04990 -31.83315 -31.60490 -28.97562 -27.27901 -26.28409 -25.47276 -24.82877 -22.08913 -21.26307 -20.72570 -19.35574 -18.10585 -16.81894 -16.32517 -15.81108 -15.67262 -15.06316 -14.75430 -14.71158 -14.66609 -13.92903 -13.52443 -13.47300 -13.27557 -13.00725 -12.65316 -12.50151 -12.41367 -12.06104 -12.00808 -11.61418 -11.43980 -11.31400 -11.20816 -11.03296 -10.90591 -10.70279 -10.53463 -10.37117 -10.23601 -10.07934 -9.82796 -9.51972 -8.29859 -8.16242 -7.87281 -7.63128 -6.17962 -4.13028 2.26695 2.31299 3.00000 3.10012 3.12720 3.60243 3.87401 4.14277 4.61355 4.65577 4.94734 5.18260 5.39872 5.48316 5.63056 5.63890 5.65797 5.69324 5.76049 5.88761 5.98301 6.00550 6.11296 6.20984 6.27170 6.36241 6.40691 6.48721 6.50950 6.59297 6.75317 6.76655 7.00450 7.08510 7.15491 7.26097 7.46695 7.55951 7.64934 7.86079 8.31475 8.88168 9.23832 9.66851 10.50644 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.007321 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.915281 B = 3823.806835 C = 5027.477617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.094 3.906 4 H 0.077 0.923 5 O -0.365 6.365 6 C 0.035 3.965 7 C 0.443 3.557 8 O -0.579 6.579 9 N -0.415 5.415 10 C -0.349 4.349 11 H 0.112 0.888 12 C 0.040 3.960 13 N -0.851 5.851 14 Si 0.922 3.078 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.257 3.743 19 C -0.073 4.073 20 C -0.151 4.151 21 C 0.064 3.936 22 F -0.160 7.160 23 C -0.149 4.149 24 C -0.041 4.041 25 C -0.095 4.095 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.273 0.727 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 0.235 1.420 4.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.033 3.967 4 H 0.094 0.906 5 O -0.283 6.283 6 C -0.062 4.062 7 C 0.232 3.768 8 O -0.463 6.463 9 N -0.133 5.133 10 C -0.475 4.475 11 H 0.130 0.870 12 C -0.166 4.166 13 N -0.488 5.488 14 Si 0.748 3.252 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.193 1.193 18 C 0.166 3.834 19 C -0.092 4.092 20 C -0.171 4.171 21 C 0.045 3.955 22 F -0.139 7.139 23 C -0.168 4.168 24 C -0.042 4.042 25 C -0.152 4.152 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.979 0.266 1.871 4.405 hybrid contribution -0.111 -0.121 -1.448 1.458 sum -4.089 0.145 0.423 4.114 Atomic orbital electron populations 1.21706 0.95729 1.01153 1.01614 1.21786 0.95869 0.94091 1.04702 1.21811 0.92159 0.95510 0.87188 0.90551 1.87885 1.88711 1.19903 1.31775 1.22698 0.99297 0.82414 1.01752 1.20769 0.90653 0.82775 0.82635 1.90599 1.64256 1.51246 1.40191 1.41411 1.02796 1.54858 1.14274 1.19867 0.91471 1.42394 0.93739 0.87021 1.25254 0.96036 0.96724 0.98632 1.69852 1.08114 1.43262 1.27536 0.85986 0.79573 0.78740 0.80880 1.20276 1.20687 1.19253 1.16772 0.82921 0.91704 0.92048 1.20646 0.92795 0.97955 0.97836 1.20547 0.94210 0.97555 1.04795 1.17395 0.75960 0.96758 1.05433 1.91372 1.30712 1.97131 1.94671 1.20459 0.94309 0.97470 1.04577 1.19437 0.91984 0.95099 0.97723 1.20523 0.99683 0.95450 0.99542 0.92899 0.92638 0.93082 0.87424 0.91496 0.94717 0.90197 0.93867 0.91429 0.87062 0.86616 0.86565 0.91312 0.93287 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.76 37.16 0.36 -1.63 16 2 C -0.13 -2.15 5.19 -26.73 -0.14 -2.29 16 3 C 0.09 1.80 1.68 -27.88 -0.05 1.75 16 4 H 0.08 1.38 7.34 -51.93 -0.38 0.99 16 5 O -0.37 -6.91 9.54 -55.09 -0.53 -7.44 16 6 C 0.04 0.54 10.79 101.05 1.09 1.63 16 7 C 0.44 10.17 6.29 -10.99 -0.07 10.10 16 8 O -0.58 -15.15 16.48 -14.31 -0.24 -15.38 16 9 N -0.41 -9.61 1.80 -58.97 -0.11 -9.72 16 10 C -0.35 -7.80 8.10 -14.95 -0.12 -7.93 16 11 H 0.11 2.30 4.88 -52.48 -0.26 2.04 16 12 C 0.04 0.91 5.45 -17.49 -0.10 0.81 16 13 N -0.85 -20.34 9.31 55.49 0.52 -19.83 16 14 Si 0.92 17.94 29.55 -169.99 -5.02 12.92 16 15 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 18 C 0.26 6.09 2.20 -83.67 -0.18 5.90 16 19 C -0.07 -1.66 9.05 -39.38 -0.36 -2.01 16 20 C -0.15 -3.19 10.02 -39.54 -0.40 -3.58 16 21 C 0.06 1.35 7.30 -39.37 -0.29 1.06 16 22 F -0.16 -3.20 17.26 2.25 0.04 -3.17 16 23 C -0.15 -3.14 9.67 -39.54 -0.38 -3.52 16 24 C -0.04 -0.92 5.00 -104.42 -0.52 -1.44 16 25 C -0.10 -1.93 9.77 36.01 0.35 -1.58 16 26 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.05 0.75 7.97 -51.93 -0.41 0.34 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.11 1.92 5.33 -51.93 -0.28 1.64 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 34 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 35 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.06 1.34 6.90 -51.93 -0.36 0.99 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -27.50 335.47 -6.54 -34.04 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.47 Total: 6.24 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.79 Total: -2.73 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.41 Total: -29.54 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.76 Total: -22.82 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.50 -6.54 -34.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602385541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.728 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds