Wall clock time and date at job start Tue Mar 31 2020 08:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 H 1.09003 * 109.47259 * 305.55073 * 3 2 1 5 5 O 1.42902 * 109.47210 * 65.54515 * 3 2 1 6 6 C 1.42894 * 114.00212 * 209.39936 * 5 3 2 7 7 C 1.50700 * 109.47240 * 185.54940 * 3 2 1 8 8 O 1.21286 * 119.99503 * 245.00300 * 7 3 2 9 9 N 1.34768 * 120.00073 * 64.99808 * 7 3 2 10 10 C 1.37121 * 120.00366 * 0.02562 * 9 7 3 11 11 H 1.08008 * 119.99660 * 359.72655 * 10 9 7 12 12 C 1.38877 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.31428 * 120.00410 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46912 * 89.99962 * 14 12 10 16 16 H 1.48494 * 109.47393 * 210.00482 * 14 12 10 17 17 H 1.48505 * 109.47126 * 330.00380 * 14 12 10 18 18 C 1.39838 * 119.99975 * 180.02562 * 9 7 3 19 19 C 1.38986 * 120.05119 * 269.72345 * 18 9 7 20 20 C 1.38040 * 119.94596 * 179.72174 * 19 18 9 21 21 C 1.38550 * 120.05401 * 0.57830 * 20 19 18 22 22 F 1.35093 * 119.94642 * 179.71992 * 21 20 19 23 23 C 1.38496 * 120.10143 * 359.69767 * 21 20 19 24 24 C 1.38087 * 120.05273 * 0.02562 * 23 21 20 25 25 C 1.50706 * 120.02497 * 180.02562 * 24 23 21 26 26 H 1.09009 * 109.46952 * 174.89893 * 1 2 3 27 27 H 1.09005 * 109.46877 * 294.89558 * 1 2 3 28 28 H 1.08995 * 109.47244 * 54.89841 * 1 2 3 29 29 H 1.09000 * 109.46830 * 240.00007 * 2 1 3 30 30 H 1.08999 * 109.47121 * 120.00099 * 2 1 3 31 31 H 1.09005 * 109.47257 * 64.84822 * 6 5 3 32 32 H 1.09005 * 109.47213 * 184.84718 * 6 5 3 33 33 H 1.08999 * 109.47402 * 304.84632 * 6 5 3 34 34 H 0.96997 * 120.00256 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.02481 * 0.02562 * 19 18 9 36 36 H 1.07998 * 119.97785 * 180.29434 * 20 19 18 37 37 H 1.08001 * 119.97305 * 180.02562 * 23 21 20 38 38 H 1.08996 * 109.46496 * 270.01669 * 25 24 23 39 39 H 1.09001 * 109.47150 * 30.01338 * 25 24 23 40 40 H 1.08994 * 109.47198 * 150.02104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 8 1.6729 2.0775 1.2264 6 6 1.4790 3.4888 1.1149 7 6 3.5407 1.4447 -0.1374 8 8 4.2320 1.8586 0.7692 9 7 4.1146 0.9868 -1.2675 10 6 3.3331 0.5193 -2.2926 11 1 2.2577 0.5140 -2.1926 12 6 3.9245 0.0480 -3.4574 13 7 5.2333 0.0494 -3.5771 14 14 2.8598 -0.5896 -4.8537 15 1 2.5250 0.5289 -5.7713 16 1 3.5991 -1.6386 -5.6007 17 1 1.6086 -1.1659 -4.2987 18 6 5.5072 0.9885 -1.3948 19 6 6.1555 2.0932 -1.9342 20 6 7.5307 2.0948 -2.0535 21 6 8.2638 0.9915 -1.6471 22 9 9.6091 0.9932 -1.7701 23 6 7.6194 -0.1128 -1.1147 24 6 6.2444 -0.1167 -0.9881 25 6 5.5439 -1.3184 -0.4080 26 1 -0.3633 -1.0237 -0.0914 27 1 -0.3633 0.4326 0.9322 28 1 -0.3633 0.5909 -0.8407 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6276 3.6883 0.4641 32 1 1.2875 3.9085 2.1025 33 1 2.3739 3.9464 0.6930 34 1 5.6463 -0.2801 -4.3905 35 1 5.5842 2.9516 -2.2551 36 1 8.0354 2.9549 -2.4681 37 1 8.1929 -0.9715 -0.7982 38 1 5.2899 -2.0125 -1.2091 39 1 6.2023 -1.8131 0.3062 40 1 4.6331 -0.9989 0.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602385541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:12 Heat of formation + Delta-G solvation = -102.245738 kcal Electronic energy + Delta-G solvation = -25236.680951 eV Core-core repulsion = 21545.174926 eV Total energy + Delta-G solvation = -3691.506025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.69134 -41.54789 -39.64767 -37.99014 -36.58744 -34.40242 -33.53651 -33.32146 -30.61863 -28.66285 -27.87919 -26.98578 -26.44941 -23.69036 -22.75885 -22.33889 -21.06820 -19.77029 -18.42760 -17.98208 -17.43534 -17.21721 -16.77890 -16.39290 -16.27289 -16.13694 -15.45752 -15.15800 -15.01209 -14.73868 -14.39494 -14.28000 -14.16052 -14.04389 -13.66760 -13.41150 -13.14422 -12.95616 -12.80392 -12.75747 -12.43861 -12.40584 -12.27144 -12.06943 -12.00959 -11.70057 -11.53693 -11.33043 -11.17994 -9.98138 -9.94489 -9.57674 -9.33417 -7.91085 -5.90609 0.56080 0.60247 1.43800 1.52394 1.61179 1.89570 2.25928 2.63933 2.93810 3.08082 3.23556 3.50128 3.97167 4.02976 4.06812 4.13156 4.18693 4.35214 4.47932 4.55777 4.59613 4.63616 4.71768 4.75453 4.82276 4.86264 4.92439 5.03366 5.06738 5.19608 5.26826 5.31874 5.39255 5.40542 5.52307 5.58059 5.74116 5.92816 6.14372 6.18840 6.57292 7.12460 7.49789 7.91816 8.76371 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.007321 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.915281 B = 3823.806835 C = 5027.477617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.101 3.899 4 H 0.088 0.912 5 O -0.381 6.381 6 C 0.029 3.971 7 C 0.429 3.571 8 O -0.622 6.622 9 N -0.416 5.416 10 C -0.356 4.356 11 H 0.129 0.871 12 C 0.003 3.997 13 N -0.872 5.872 14 Si 0.982 3.018 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.251 1.251 18 C 0.236 3.764 19 C -0.094 4.094 20 C -0.150 4.150 21 C 0.058 3.942 22 F -0.152 7.152 23 C -0.150 4.150 24 C -0.061 4.061 25 C -0.086 4.086 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -0.321 0.974 5.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.040 3.960 4 H 0.106 0.894 5 O -0.299 6.299 6 C -0.067 4.067 7 C 0.220 3.780 8 O -0.509 6.509 9 N -0.133 5.133 10 C -0.482 4.482 11 H 0.146 0.854 12 C -0.201 4.201 13 N -0.509 5.509 14 Si 0.806 3.194 15 H -0.206 1.206 16 H -0.217 1.217 17 H -0.174 1.174 18 C 0.145 3.855 19 C -0.114 4.114 20 C -0.169 4.169 21 C 0.039 3.961 22 F -0.131 7.131 23 C -0.169 4.169 24 C -0.063 4.063 25 C -0.143 4.143 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.286 -0.288 1.425 5.482 hybrid contribution 0.361 0.101 -1.295 1.349 sum -4.925 -0.187 0.129 4.930 Atomic orbital electron populations 1.21659 0.92863 1.02651 1.02235 1.21741 0.98248 0.92350 1.03629 1.21825 0.89371 0.97034 0.87770 0.89403 1.87861 1.88480 1.21660 1.31903 1.22913 0.99380 0.80659 1.03724 1.21560 0.92345 0.82086 0.81987 1.90550 1.65625 1.53209 1.41515 1.41609 1.02937 1.54286 1.14496 1.20272 0.92255 1.42068 0.93566 0.85386 1.25971 0.96934 0.96758 1.00409 1.70007 1.09444 1.43846 1.27561 0.85061 0.78641 0.77671 0.77993 1.20571 1.21722 1.17445 1.17111 0.83510 0.92416 0.92509 1.20741 0.93715 0.97940 0.98962 1.20781 0.93677 0.98423 1.04054 1.17473 0.76345 0.96865 1.05453 1.91387 1.30030 1.97104 1.94616 1.20746 0.94086 0.98263 1.03811 1.19733 0.92757 0.95565 0.98261 1.20454 0.99327 0.94791 0.99728 0.91067 0.92397 0.91977 0.88356 0.92659 0.91877 0.87987 0.96001 0.92102 0.87638 0.84217 0.84139 0.91508 0.90754 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.76 71.98 0.70 -2.71 16 2 C -0.12 -4.00 5.19 30.59 0.16 -3.84 16 3 C 0.10 3.79 1.68 29.85 0.05 3.84 16 4 H 0.09 3.05 7.34 -2.39 -0.02 3.04 16 5 O -0.38 -14.13 9.54 -129.99 -1.24 -15.37 16 6 C 0.03 0.87 10.79 113.37 1.22 2.10 16 7 C 0.43 20.05 6.29 87.66 0.55 20.60 16 8 O -0.62 -33.49 16.48 15.94 0.26 -33.22 16 9 N -0.42 -19.49 1.80 -458.88 -0.82 -20.31 16 10 C -0.36 -15.78 8.10 84.02 0.68 -15.10 16 11 H 0.13 5.10 4.88 -2.91 -0.01 5.09 16 12 C 0.00 0.14 5.45 84.91 0.46 0.60 16 13 N -0.87 -41.69 9.31 21.65 0.20 -41.49 16 14 Si 0.98 35.89 29.55 68.60 2.03 37.92 16 15 H -0.28 -10.31 7.11 99.48 0.71 -9.61 16 16 H -0.29 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 18 C 0.24 11.33 2.20 38.21 0.08 11.41 16 19 C -0.09 -4.36 9.05 22.40 0.20 -4.15 16 20 C -0.15 -6.28 10.02 22.30 0.22 -6.06 16 21 C 0.06 2.40 7.30 22.41 0.16 2.57 16 22 F -0.15 -5.90 17.26 44.97 0.78 -5.12 16 23 C -0.15 -6.22 9.67 22.30 0.22 -6.01 16 24 C -0.06 -2.77 5.00 -19.73 -0.10 -2.87 16 25 C -0.09 -3.48 9.77 71.24 0.70 -2.79 16 26 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.06 1.42 7.97 -2.38 -0.02 1.40 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 3.40 5.33 -2.39 -0.01 3.38 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.02 0.72 8.11 -2.39 -0.02 0.70 16 34 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 35 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 40 H 0.05 2.00 6.90 -2.39 -0.02 1.98 16 Total: -1.00 -59.03 335.47 7.56 -51.47 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 1.05 Total: 28.54 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.32 Total: -2.41 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.62 Total: -61.80 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.98 Total: -48.59 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.78 Total: -5.12 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -59.03 7.56 -51.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602385541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.781 kcal (2) G-P(sol) polarization free energy of solvation -59.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds