Wall clock time and date at job start Tue Mar 31 2020 08:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 H 1.08994 * 109.46907 * 51.71925 * 3 2 1 5 5 O 1.42902 * 109.47228 * 291.72031 * 3 2 1 6 6 C 1.42901 * 113.99782 * 103.90298 * 5 3 2 7 7 C 1.50703 * 109.46946 * 171.72331 * 3 2 1 8 8 O 1.21275 * 120.00047 * 110.75591 * 7 3 2 9 9 N 1.34778 * 119.99612 * 290.74844 * 7 3 2 10 10 C 1.37126 * 119.99434 * 128.68374 * 9 7 3 11 11 H 1.08005 * 120.00070 * 160.92556 * 10 9 7 12 12 C 1.38887 * 120.00338 * 340.93101 * 10 9 7 13 13 N 1.31428 * 119.99538 * 348.41263 * 12 10 9 14 14 Si 1.86793 * 120.00201 * 168.41626 * 12 10 9 15 15 H 1.48504 * 109.47446 * 89.99611 * 14 12 10 16 16 H 1.48503 * 109.47378 * 210.00133 * 14 12 10 17 17 H 1.48508 * 109.47243 * 329.99812 * 14 12 10 18 18 C 1.39837 * 120.00334 * 308.68409 * 9 7 3 19 19 C 1.38974 * 120.04838 * 90.00302 * 18 9 7 20 20 C 1.38049 * 119.94564 * 179.97438 * 19 18 9 21 21 C 1.38542 * 120.05006 * 359.97438 * 20 19 18 22 22 F 1.35101 * 119.94499 * 180.02562 * 21 20 19 23 23 C 1.38497 * 120.10326 * 0.02562 * 21 20 19 24 24 C 1.38086 * 120.05412 * 359.74001 * 23 21 20 25 25 C 1.50701 * 120.02381 * 180.27819 * 24 23 21 26 26 H 1.08999 * 109.46993 * 300.40615 * 1 2 3 27 27 H 1.09005 * 109.46746 * 180.40648 * 1 2 3 28 28 H 1.08997 * 109.47200 * 60.40788 * 1 2 3 29 29 H 1.08995 * 109.47295 * 120.00226 * 2 1 3 30 30 H 1.08999 * 109.47114 * 240.00435 * 2 1 3 31 31 H 1.08997 * 109.46610 * 64.45842 * 6 5 3 32 32 H 1.08998 * 109.46720 * 184.44969 * 6 5 3 33 33 H 1.08995 * 109.47427 * 304.45542 * 6 5 3 34 34 H 0.96997 * 119.99721 * 185.00115 * 13 12 10 35 35 H 1.07999 * 120.03047 * 359.97438 * 19 18 9 36 36 H 1.07995 * 119.97366 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.96723 * 180.02562 * 23 21 20 38 38 H 1.09002 * 109.46643 * 270.23206 * 25 24 23 39 39 H 1.08997 * 109.47624 * 30.23235 * 25 24 23 40 40 H 1.09002 * 109.46906 * 150.23509 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5609 1.9972 0.8067 5 8 1.7287 2.0578 -1.2516 6 6 0.6272 2.9664 -1.1946 7 6 3.5331 1.4474 0.2045 8 8 4.2684 1.7741 -0.7029 9 7 4.0511 1.0890 1.3960 10 6 5.0408 0.1417 1.4561 11 1 5.6661 0.0689 2.3338 12 6 5.2393 -0.7240 0.3884 13 7 4.3485 -0.7936 -0.5754 14 14 6.7722 -1.7895 0.3224 15 1 6.5052 -3.0836 1.0001 16 1 7.1407 -2.0394 -1.0943 17 1 7.8895 -1.0925 1.0088 18 6 3.5795 1.6830 2.5708 19 6 2.5128 1.1157 3.2576 20 6 2.0492 1.7036 4.4175 21 6 2.6468 2.8578 4.8971 22 9 2.1917 3.4311 6.0326 23 6 3.7100 3.4249 4.2142 24 6 4.1803 2.8377 3.0563 25 6 5.3412 3.4518 2.3172 26 1 -0.3633 0.5201 0.8863 27 1 -0.3633 -1.0277 0.0073 28 1 -0.3633 0.5075 -0.8936 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 0.8835 3.8080 -0.5511 32 1 0.4043 3.3306 -2.1974 33 1 -0.2462 2.4537 -0.7917 34 1 4.4502 -1.4490 -1.2833 35 1 2.0468 0.2158 2.8844 36 1 1.2200 1.2634 4.9514 37 1 4.1745 4.3244 4.5903 38 1 4.9681 4.1714 1.5884 39 1 5.9960 3.9588 3.0260 40 1 5.8991 2.6694 1.8026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602385542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:14 Heat of formation + Delta-G solvation = -96.624865 kcal Electronic energy + Delta-G solvation = -25293.998343 eV Core-core repulsion = 21602.736057 eV Total energy + Delta-G solvation = -3691.262286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.81042 -41.36006 -39.64439 -38.33902 -35.97796 -34.11987 -33.85672 -33.40593 -30.21050 -29.21572 -27.96243 -27.11881 -25.88851 -23.66197 -23.00440 -22.47112 -21.11361 -19.14464 -18.33121 -18.01429 -17.64927 -17.47153 -16.62374 -16.51052 -16.28864 -15.97082 -15.74276 -15.16401 -14.91222 -14.53200 -14.41299 -14.36560 -14.06005 -14.03370 -13.69975 -13.30630 -13.13147 -12.88766 -12.82475 -12.71040 -12.61085 -12.48761 -12.34829 -12.12888 -12.11095 -11.99190 -11.54573 -11.11685 -10.77673 -10.11716 -9.83841 -9.39804 -9.25805 -8.18823 -5.74216 0.17952 0.30139 1.39205 1.46378 1.53507 2.00885 2.37724 2.57675 2.74265 3.25044 3.29096 3.38304 3.84235 3.93470 3.99836 4.10059 4.21812 4.24573 4.46658 4.48121 4.52159 4.54600 4.68033 4.69594 4.73962 4.79170 4.88142 4.99516 5.03980 5.15236 5.20559 5.25386 5.34425 5.36673 5.47333 5.66548 5.74629 5.91503 6.13711 6.34868 6.96869 7.36963 7.69838 8.11653 8.90484 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.007835 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.541760 B = 3572.933623 C = 4824.423779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C 0.090 3.910 4 H 0.076 0.924 5 O -0.396 6.396 6 C 0.019 3.981 7 C 0.551 3.449 8 O -0.558 6.558 9 N -0.493 5.493 10 C -0.311 4.311 11 H 0.084 0.916 12 C -0.017 4.017 13 N -0.885 5.885 14 Si 0.982 3.018 15 H -0.268 1.268 16 H -0.296 1.296 17 H -0.270 1.270 18 C 0.130 3.870 19 C -0.096 4.096 20 C -0.141 4.141 21 C 0.086 3.914 22 F -0.141 7.141 23 C -0.141 4.141 24 C -0.077 4.077 25 C -0.106 4.106 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 5.321 8.692 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C 0.028 3.972 4 H 0.094 0.906 5 O -0.314 6.314 6 C -0.077 4.077 7 C 0.342 3.658 8 O -0.433 6.433 9 N -0.219 5.219 10 C -0.437 4.437 11 H 0.101 0.899 12 C -0.219 4.219 13 N -0.525 5.525 14 Si 0.808 3.192 15 H -0.194 1.194 16 H -0.223 1.223 17 H -0.195 1.195 18 C 0.039 3.961 19 C -0.116 4.116 20 C -0.160 4.160 21 C 0.067 3.933 22 F -0.120 7.120 23 C -0.161 4.161 24 C -0.078 4.078 25 C -0.162 4.162 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.175 0.825 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.227 5.430 7.822 12.584 hybrid contribution 0.804 -0.689 -0.129 1.067 sum -7.423 4.741 7.693 11.694 Atomic orbital electron populations 1.21853 0.93585 1.02571 1.02082 1.21500 0.96190 0.93516 1.02538 1.22058 0.93188 0.95728 0.86196 0.90625 1.88010 1.52055 1.60537 1.30801 1.23140 0.88790 0.92120 1.03652 1.20007 0.89530 0.74483 0.81748 1.90376 1.63673 1.43953 1.45317 1.40434 1.39164 1.40699 1.01631 1.19389 1.11447 1.08957 1.03871 0.89850 1.25806 1.00688 0.99215 0.96172 1.69628 1.34344 1.35460 1.13032 0.85071 0.79043 0.78461 0.76591 1.19365 1.22286 1.19513 1.18076 0.95066 0.93304 0.89631 1.21580 0.95930 0.99684 0.94393 1.21192 1.02342 0.95405 0.97090 1.17678 0.96475 0.94519 0.84618 1.91474 1.88292 1.84157 1.48051 1.20983 0.97567 1.02160 0.95346 1.20276 0.97441 0.94793 0.95337 1.20652 0.95610 1.00263 0.99719 0.91380 0.91540 0.92418 0.92006 0.92991 0.94135 0.88326 0.91847 0.92768 0.84798 0.82004 0.82528 0.92068 0.89054 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.17 71.98 0.66 -3.47 16 2 C -0.10 -3.99 4.83 30.60 0.15 -3.84 16 3 C 0.09 3.86 2.27 29.85 0.07 3.92 16 4 H 0.08 2.85 6.86 -2.39 -0.02 2.83 16 5 O -0.40 -17.07 9.68 -130.11 -1.26 -18.33 16 6 C 0.02 0.56 10.40 113.37 1.18 1.74 16 7 C 0.55 28.69 4.06 87.66 0.36 29.04 16 8 O -0.56 -34.49 15.81 15.86 0.25 -34.24 16 9 N -0.49 -23.99 1.73 -458.88 -0.79 -24.78 16 10 C -0.31 -16.42 8.92 84.02 0.75 -15.67 16 11 H 0.08 4.29 7.86 -2.91 -0.02 4.26 16 12 C -0.02 -0.94 5.03 84.91 0.43 -0.51 16 13 N -0.88 -50.42 9.04 21.65 0.20 -50.23 16 14 Si 0.98 44.42 29.57 68.60 2.03 46.45 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C 0.13 5.18 4.40 38.21 0.17 5.35 16 19 C -0.10 -3.17 9.38 22.40 0.21 -2.96 16 20 C -0.14 -3.74 10.02 22.30 0.22 -3.51 16 21 C 0.09 2.33 7.30 22.40 0.16 2.49 16 22 F -0.14 -3.59 17.27 44.97 0.78 -2.82 16 23 C -0.14 -3.98 9.67 22.30 0.22 -3.77 16 24 C -0.08 -2.69 5.90 -19.73 -0.12 -2.81 16 25 C -0.11 -3.75 9.77 71.24 0.70 -3.05 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.06 1.59 6.48 -2.39 -0.02 1.58 16 29 H 0.06 2.63 7.07 -2.39 -0.02 2.61 16 30 H 0.05 2.47 7.34 -2.39 -0.02 2.46 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.06 1.54 6.24 -2.39 -0.01 1.53 16 34 H 0.26 14.71 8.32 -92.71 -0.77 13.94 16 35 H 0.13 4.40 7.04 -2.91 -0.02 4.38 16 36 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 37 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 2.53 8.09 -2.39 -0.02 2.51 16 40 H 0.05 2.22 6.91 -2.39 -0.02 2.20 16 Total: -1.00 -69.40 334.56 7.39 -62.01 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.05 Total: 18.98 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.15 Total: 2.95 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -0.60 Total: -75.00 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -1.01 Total: -52.57 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.40 7.39 -62.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602385542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.612 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds