Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 113.38434 * 2 1 4 4 C 1.53516 * 114.17476 * 133.08342 * 2 1 3 5 5 N 1.47481 * 87.93197 * 87.62079 * 4 2 1 6 6 C 1.46901 * 110.99872 * 138.70756 * 5 4 2 7 7 C 1.53000 * 109.47024 * 76.48808 * 6 5 4 8 8 C 1.53003 * 109.46787 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.46888 * 179.97438 * 8 7 6 10 10 C 1.76206 * 99.99787 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99569 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99881 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99807 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99910 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46957 * 90.00011 * 14 12 10 16 16 H 1.48502 * 109.47443 * 209.99869 * 14 12 10 17 17 H 1.48503 * 109.47150 * 330.00273 * 14 12 10 18 18 C 1.47479 * 87.83353 * 27.01165 * 5 4 2 19 19 H 1.09000 * 113.47289 * 218.21887 * 18 5 4 20 20 C 1.50705 * 113.47496 * 87.81955 * 18 5 4 21 21 C 1.34508 * 125.79137 * 131.87929 * 20 18 5 22 22 C 1.41374 * 106.84307 * 179.97438 * 21 20 18 23 23 C 1.34518 * 106.84215 * 359.97438 * 22 21 20 24 24 O 1.34298 * 125.78771 * 311.56854 * 20 18 5 25 25 H 1.09010 * 109.46557 * 306.42031 * 1 2 3 26 26 H 1.08999 * 109.47479 * 66.41705 * 1 2 3 27 27 H 1.08998 * 109.47508 * 186.42766 * 1 2 3 28 28 H 1.08996 * 109.47306 * 173.57521 * 3 2 1 29 29 H 1.08997 * 109.47263 * 293.57876 * 3 2 1 30 30 H 1.09001 * 109.46620 * 53.58049 * 3 2 1 31 31 H 1.09001 * 113.47062 * 332.85589 * 4 2 1 32 32 H 1.08997 * 113.47785 * 202.39273 * 4 2 1 33 33 H 1.09000 * 109.46752 * 196.48889 * 6 5 4 34 34 H 1.08995 * 109.46908 * 316.48877 * 6 5 4 35 35 H 1.08995 * 109.47030 * 299.99923 * 7 6 5 36 36 H 1.08995 * 109.47222 * 60.00262 * 7 6 5 37 37 H 1.09000 * 109.46838 * 299.99988 * 8 7 6 38 38 H 1.09002 * 109.47302 * 59.99865 * 8 7 6 39 39 H 0.97005 * 119.99677 * 179.97438 * 13 12 10 40 40 H 1.08007 * 126.58065 * 0.03286 * 21 20 18 41 41 H 1.08006 * 126.58549 * 180.02562 * 22 21 20 42 42 H 1.07991 * 125.79118 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1586 -0.9567 1.0229 5 7 2.0810 -2.0161 -0.0001 6 6 3.2986 -2.8380 -0.0002 7 6 3.2644 -3.8002 1.1890 8 6 4.5328 -4.6558 1.1892 9 16 4.4928 -5.7935 2.5964 10 6 6.0251 -6.6300 2.3572 11 1 6.6588 -6.3679 1.5229 12 6 6.4171 -7.6264 3.2404 13 7 7.5615 -8.2516 3.0614 14 14 5.3205 -8.0801 4.6830 15 1 4.3835 -9.1568 4.2730 16 1 6.1594 -8.5572 5.8117 17 1 4.5468 -6.8870 5.1110 18 6 2.1585 -0.9565 -1.0230 19 1 1.5246 -1.1428 -1.8899 20 6 3.5704 -0.5896 -1.4016 21 6 4.0424 -0.4684 -2.6552 22 6 5.4064 -0.1127 -2.5468 23 6 5.6862 -0.0374 -1.2332 24 8 4.5691 -0.3226 -0.5444 25 1 -0.3633 0.6102 0.8270 26 1 -0.3634 0.4111 -0.9418 27 1 -0.3634 -1.0212 0.1150 28 1 3.2187 1.3326 0.1150 29 1 1.9041 1.9010 -0.9418 30 1 1.7214 1.9800 0.8270 31 1 1.5247 -1.1429 1.8898 32 1 3.1797 -0.6905 1.2959 33 1 3.3519 -3.4083 -0.9276 34 1 4.1729 -2.1922 0.0800 35 1 3.2111 -3.2299 2.1163 36 1 2.3901 -4.4460 1.1088 37 1 4.5866 -5.2260 0.2618 38 1 5.4070 -4.0096 1.2696 39 1 7.8356 -8.9477 3.6789 40 1 3.4859 -0.6138 -3.5694 41 1 6.0920 0.0652 -3.3621 42 1 6.6455 0.2130 -0.8052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602928561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = 38.418959 kcal Electronic energy + Delta-G solvation = -21748.709968 eV Core-core repulsion = 18629.516798 eV Total energy + Delta-G solvation = -3119.193170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.10014 -40.54530 -34.80470 -33.19333 -32.42139 -31.86939 -30.20801 -27.61749 -26.90476 -25.83971 -25.61208 -22.95224 -21.93921 -21.18371 -20.52380 -18.95710 -17.46177 -16.91713 -16.46500 -15.80895 -15.69828 -15.28996 -14.95938 -14.43988 -14.39364 -13.94526 -13.39043 -13.07003 -13.02250 -12.86629 -12.77927 -12.68152 -12.55247 -12.24323 -12.08431 -11.71151 -11.49053 -11.30818 -11.05522 -11.02158 -10.77538 -10.49090 -10.34107 -10.08920 -10.02196 -9.74074 -9.10173 -8.98583 -8.55252 -8.53605 -6.91650 -6.26618 -3.98457 1.53382 2.45409 2.78036 3.02836 3.31831 3.47259 3.58277 3.93396 3.98583 4.33601 4.37017 4.65314 4.81122 4.87547 4.89837 4.95403 4.99699 5.07631 5.12280 5.30071 5.37411 5.42618 5.48192 5.55521 5.62507 5.65858 5.69065 5.73528 5.77671 5.79712 5.80879 5.91668 5.98668 6.07070 6.10770 6.20106 6.32409 6.35249 6.52495 6.67561 6.88070 7.05292 7.97288 8.46122 9.19449 10.82976 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.003545 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.213948 B = 7896.109843 C = 8795.297584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 C -0.138 4.138 4 C 0.002 3.998 5 N -0.454 5.454 6 C 0.018 3.982 7 C -0.092 4.092 8 C -0.080 4.080 9 S -0.215 6.215 10 C -0.502 4.502 11 H 0.087 0.913 12 C 0.092 3.908 13 N -0.883 5.883 14 Si 0.862 3.138 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.238 1.238 18 C 0.108 3.892 19 H 0.120 0.880 20 C -0.013 4.013 21 C -0.198 4.198 22 C -0.214 4.214 23 C -0.039 4.039 24 O -0.169 6.169 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.270 0.730 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 21.062 -9.642 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.127 4.127 5 N -0.175 5.175 6 C -0.111 4.111 7 C -0.131 4.131 8 C -0.229 4.229 9 S 0.013 5.987 10 C -0.649 4.649 11 H 0.105 0.895 12 C -0.116 4.116 13 N -0.520 5.520 14 Si 0.687 3.313 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.162 1.162 18 C -0.002 4.002 19 H 0.138 0.862 20 C -0.064 4.064 21 C -0.218 4.218 22 C -0.234 4.234 23 C -0.107 4.107 24 O -0.066 6.066 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.271 20.221 -8.436 25.113 hybrid contribution 1.815 0.122 -0.663 1.936 sum -10.456 20.344 -9.099 24.617 Atomic orbital electron populations 1.21477 0.91613 1.03006 1.01757 1.22097 0.96560 0.94204 0.95618 1.21761 1.01026 0.94907 1.01857 1.24089 1.01136 0.90805 0.96623 1.69028 1.34780 1.10458 1.03204 1.22871 0.91353 0.96804 1.00084 1.21212 0.97809 0.96937 0.97135 1.22999 0.99317 0.99573 1.01015 1.84140 1.32200 1.45937 1.36410 1.22134 1.03032 1.22874 1.16886 0.89493 1.24792 0.94835 0.94584 0.97426 1.69942 1.20655 1.23890 1.37491 0.86667 0.81206 0.81125 0.82332 1.19345 1.20116 1.16174 1.21968 0.87268 0.92795 0.98147 0.86184 1.22383 0.90423 1.05127 0.88456 1.21561 0.95527 1.07376 0.97317 1.21806 0.96685 1.07887 0.96981 1.24128 0.90403 1.04660 0.91482 1.84165 1.17777 1.67287 1.37323 0.92094 0.92346 0.91070 0.91958 0.92385 0.92143 0.89450 0.90387 0.90732 0.92445 0.91706 0.90821 0.91523 0.91701 0.92005 0.83597 0.83516 0.78206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.20 37.15 0.34 -0.61 16 2 C -0.08 -0.78 1.49 -153.98 -0.23 -1.01 16 3 C -0.14 -1.18 8.59 37.16 0.32 -0.86 16 4 C 0.00 0.03 5.95 -7.55 -0.04 -0.02 16 5 N -0.45 -5.64 6.17 -237.86 -1.47 -7.11 16 6 C 0.02 0.26 4.22 -3.82 -0.02 0.25 16 7 C -0.09 -1.54 5.35 -26.73 -0.14 -1.68 16 8 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16 9 S -0.21 -5.40 19.41 -107.50 -2.09 -7.49 16 10 C -0.50 -14.90 10.04 30.94 0.31 -14.59 16 11 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 12 C 0.09 2.73 5.50 -17.43 -0.10 2.63 16 13 N -0.88 -27.18 13.97 55.49 0.78 -26.40 16 14 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.24 -5.94 6.74 56.52 0.38 -5.55 16 18 C 0.11 1.13 4.14 -72.59 -0.30 0.83 16 19 H 0.12 1.12 8.12 -51.93 -0.42 0.70 16 20 C -0.01 -0.14 3.67 -35.62 -0.13 -0.27 16 21 C -0.20 -2.08 10.81 -39.71 -0.43 -2.51 16 22 C -0.21 -2.15 10.91 -39.70 -0.43 -2.58 16 23 C -0.04 -0.40 12.09 29.42 0.36 -0.04 16 24 O -0.17 -2.01 5.83 5.72 0.03 -1.97 16 25 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16 28 H 0.06 0.61 5.94 -51.93 -0.31 0.30 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.08 0.96 6.29 -51.93 -0.33 0.64 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 35 H 0.06 1.09 7.76 -51.93 -0.40 0.68 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 38 H 0.06 1.34 8.14 -51.91 -0.42 0.92 16 39 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -31.98 346.34 -9.30 -41.28 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.77 Total: 1.15 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.28 Total: -21.88 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: -0.69 Total: -33.51 kcal Atomic # 8 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.09 Total: -7.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.98 -9.30 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602928561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.697 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds