Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 113.38434 * 2 1 4 4 C 1.53516 * 114.17476 * 133.08342 * 2 1 3 5 5 N 1.47481 * 87.93197 * 87.62079 * 4 2 1 6 6 C 1.46901 * 110.99872 * 138.70756 * 5 4 2 7 7 C 1.53000 * 109.47024 * 76.48808 * 6 5 4 8 8 C 1.53003 * 109.46787 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.46888 * 179.97438 * 8 7 6 10 10 C 1.76206 * 99.99787 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99569 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99881 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99807 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99910 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46957 * 90.00011 * 14 12 10 16 16 H 1.48502 * 109.47443 * 209.99869 * 14 12 10 17 17 H 1.48503 * 109.47150 * 330.00273 * 14 12 10 18 18 C 1.47479 * 87.83353 * 27.01165 * 5 4 2 19 19 H 1.09000 * 113.47289 * 218.21887 * 18 5 4 20 20 C 1.50705 * 113.47496 * 87.81955 * 18 5 4 21 21 C 1.34508 * 125.79137 * 131.87929 * 20 18 5 22 22 C 1.41374 * 106.84307 * 179.97438 * 21 20 18 23 23 C 1.34518 * 106.84215 * 359.97438 * 22 21 20 24 24 O 1.34298 * 125.78771 * 311.56854 * 20 18 5 25 25 H 1.09010 * 109.46557 * 306.42031 * 1 2 3 26 26 H 1.08999 * 109.47479 * 66.41705 * 1 2 3 27 27 H 1.08998 * 109.47508 * 186.42766 * 1 2 3 28 28 H 1.08996 * 109.47306 * 173.57521 * 3 2 1 29 29 H 1.08997 * 109.47263 * 293.57876 * 3 2 1 30 30 H 1.09001 * 109.46620 * 53.58049 * 3 2 1 31 31 H 1.09001 * 113.47062 * 332.85589 * 4 2 1 32 32 H 1.08997 * 113.47785 * 202.39273 * 4 2 1 33 33 H 1.09000 * 109.46752 * 196.48889 * 6 5 4 34 34 H 1.08995 * 109.46908 * 316.48877 * 6 5 4 35 35 H 1.08995 * 109.47030 * 299.99923 * 7 6 5 36 36 H 1.08995 * 109.47222 * 60.00262 * 7 6 5 37 37 H 1.09000 * 109.46838 * 299.99988 * 8 7 6 38 38 H 1.09002 * 109.47302 * 59.99865 * 8 7 6 39 39 H 0.97005 * 119.99677 * 179.97438 * 13 12 10 40 40 H 1.08007 * 126.58065 * 0.03286 * 21 20 18 41 41 H 1.08006 * 126.58549 * 180.02562 * 22 21 20 42 42 H 1.07991 * 125.79118 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1586 -0.9567 1.0229 5 7 2.0810 -2.0161 -0.0001 6 6 3.2986 -2.8380 -0.0002 7 6 3.2644 -3.8002 1.1890 8 6 4.5328 -4.6558 1.1892 9 16 4.4928 -5.7935 2.5964 10 6 6.0251 -6.6300 2.3572 11 1 6.6588 -6.3679 1.5229 12 6 6.4171 -7.6264 3.2404 13 7 7.5615 -8.2516 3.0614 14 14 5.3205 -8.0801 4.6830 15 1 4.3835 -9.1568 4.2730 16 1 6.1594 -8.5572 5.8117 17 1 4.5468 -6.8870 5.1110 18 6 2.1585 -0.9565 -1.0230 19 1 1.5246 -1.1428 -1.8899 20 6 3.5704 -0.5896 -1.4016 21 6 4.0424 -0.4684 -2.6552 22 6 5.4064 -0.1127 -2.5468 23 6 5.6862 -0.0374 -1.2332 24 8 4.5691 -0.3226 -0.5444 25 1 -0.3633 0.6102 0.8270 26 1 -0.3634 0.4111 -0.9418 27 1 -0.3634 -1.0212 0.1150 28 1 3.2187 1.3326 0.1150 29 1 1.9041 1.9010 -0.9418 30 1 1.7214 1.9800 0.8270 31 1 1.5247 -1.1429 1.8898 32 1 3.1797 -0.6905 1.2959 33 1 3.3519 -3.4083 -0.9276 34 1 4.1729 -2.1922 0.0800 35 1 3.2111 -3.2299 2.1163 36 1 2.3901 -4.4460 1.1088 37 1 4.5866 -5.2260 0.2618 38 1 5.4070 -4.0096 1.2696 39 1 7.8356 -8.9477 3.6789 40 1 3.4859 -0.6138 -3.5694 41 1 6.0920 0.0652 -3.3621 42 1 6.6455 0.2130 -0.8052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602928561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = 18.511111 kcal Electronic energy + Delta-G solvation = -21749.573237 eV Core-core repulsion = 18629.516798 eV Total energy + Delta-G solvation = -3120.056439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.90742 -41.40216 -36.01027 -34.71404 -33.98462 -32.91870 -31.02216 -28.38376 -28.14058 -27.74850 -26.66081 -24.13769 -22.77590 -22.22030 -21.49320 -19.74021 -19.65375 -17.71728 -17.36139 -17.14077 -16.85452 -16.72255 -16.23746 -15.81695 -15.58460 -15.08219 -14.94421 -14.32733 -14.02728 -13.83803 -13.67176 -13.60091 -13.55203 -13.42118 -13.15930 -13.07429 -12.94491 -12.71825 -12.63178 -12.13779 -12.03552 -11.82492 -11.68803 -11.41700 -11.19045 -11.15709 -10.84842 -10.61428 -10.05859 -9.35682 -9.03164 -8.54468 -6.26581 0.73578 1.09314 1.30694 1.46097 1.67504 1.70251 2.02238 2.23087 2.64595 2.83537 3.03373 3.16278 3.58699 3.79200 3.87535 4.04150 4.08436 4.14833 4.21421 4.26483 4.30101 4.38555 4.52261 4.63897 4.66344 4.69811 4.78346 4.82056 4.87469 4.98871 4.99124 5.05731 5.08544 5.12756 5.16798 5.24509 5.28389 5.31214 5.53641 5.59000 5.67000 5.91930 6.06806 6.22340 6.89281 8.58884 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.003545 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.213948 B = 7896.109843 C = 8795.297584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C -0.134 4.134 4 C -0.003 4.003 5 N -0.461 5.461 6 C 0.031 3.969 7 C -0.078 4.078 8 C -0.067 4.067 9 S -0.214 6.214 10 C -0.525 4.525 11 H 0.048 0.952 12 C 0.039 3.961 13 N -0.922 5.922 14 Si 0.926 3.074 15 H -0.260 1.260 16 H -0.260 1.260 17 H -0.230 1.230 18 C 0.107 3.893 19 H 0.133 0.867 20 C -0.027 4.027 21 C -0.205 4.205 22 C -0.223 4.223 23 C -0.051 4.051 24 O -0.185 6.185 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.278 0.722 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 22.314 -9.521 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.071 4.071 3 C -0.191 4.191 4 C -0.132 4.132 5 N -0.181 5.181 6 C -0.099 4.099 7 C -0.117 4.117 8 C -0.216 4.216 9 S 0.014 5.986 10 C -0.673 4.673 11 H 0.066 0.934 12 C -0.165 4.165 13 N -0.560 5.560 14 Si 0.747 3.253 15 H -0.185 1.185 16 H -0.185 1.185 17 H -0.153 1.153 18 C -0.003 4.003 19 H 0.151 0.849 20 C -0.077 4.077 21 C -0.225 4.225 22 C -0.242 4.242 23 C -0.118 4.118 24 O -0.082 6.082 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.116 21.484 -8.328 27.021 hybrid contribution 2.452 -0.191 -0.821 2.593 sum -11.663 21.292 -9.149 25.944 Atomic orbital electron populations 1.21476 0.90239 1.02777 1.03039 1.22081 0.97395 0.93989 0.93664 1.21718 1.00049 0.94583 1.02768 1.24125 1.00766 0.91283 0.97018 1.69014 1.33303 1.11216 1.04606 1.22637 0.92391 0.96412 0.98450 1.21076 0.95466 0.96720 0.98463 1.23034 1.01270 0.98720 0.98590 1.83811 1.29134 1.46588 1.39093 1.22335 1.04900 1.23986 1.16061 0.93366 1.25781 0.96265 0.94244 1.00252 1.70038 1.22419 1.24590 1.38937 0.85706 0.79494 0.81194 0.78905 1.18479 1.18473 1.15310 1.22085 0.87425 0.92282 0.98461 0.84910 1.22526 0.90652 1.05878 0.88693 1.21876 0.95956 1.06890 0.97736 1.22122 0.96925 1.07648 0.97514 1.24703 0.90838 1.04363 0.91890 1.84148 1.18384 1.67644 1.38043 0.91065 0.90868 0.92009 0.93431 0.91518 0.91064 0.89319 0.91618 0.91184 0.92975 0.91567 0.90838 0.91910 0.92166 0.91308 0.82076 0.81762 0.76032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.20 71.98 0.66 -0.89 16 2 C -0.07 -1.18 1.49 -51.84 -0.08 -1.25 16 3 C -0.13 -2.04 8.59 71.98 0.62 -1.42 16 4 C 0.00 -0.07 5.95 83.57 0.50 0.43 16 5 N -0.46 -10.89 6.17 -906.44 -5.60 -16.48 16 6 C 0.03 0.87 4.22 86.30 0.36 1.24 16 7 C -0.08 -2.56 5.35 30.60 0.16 -2.39 16 8 C -0.07 -2.75 5.67 71.98 0.41 -2.34 16 9 S -0.21 -10.72 19.41 -56.49 -1.10 -11.82 16 10 C -0.53 -31.90 10.04 67.95 0.68 -31.22 16 11 H 0.05 3.19 8.03 -2.91 -0.02 3.17 16 12 C 0.04 2.36 5.50 84.86 0.47 2.83 16 13 N -0.92 -57.63 13.97 21.65 0.30 -57.33 16 14 Si 0.93 44.86 27.74 68.60 1.90 46.76 16 15 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.23 -10.75 6.74 99.48 0.67 -10.08 16 18 C 0.11 2.07 4.14 41.44 0.17 2.24 16 19 H 0.13 2.20 8.12 -2.39 -0.02 2.19 16 20 C -0.03 -0.57 3.67 24.83 0.09 -0.48 16 21 C -0.20 -4.03 10.81 22.19 0.24 -3.79 16 22 C -0.22 -4.19 10.91 22.19 0.24 -3.95 16 23 C -0.05 -0.99 12.09 66.97 0.81 -0.18 16 24 O -0.19 -4.30 5.83 -2.44 -0.01 -4.31 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.95 7.94 -2.39 -0.02 0.93 16 28 H 0.05 0.88 5.94 -2.39 -0.01 0.87 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 32 H 0.07 1.59 6.29 -2.39 -0.02 1.58 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.54 4.81 -2.39 -0.01 1.53 16 35 H 0.07 2.15 7.76 -2.39 -0.02 2.14 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 39 H 0.28 15.92 8.31 -92.70 -0.77 15.15 16 40 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.22 2.96 8.06 -2.92 -0.02 2.94 16 Total: -1.00 -68.89 346.34 1.79 -67.11 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.95 Total: 17.26 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 5.34 Total: -41.19 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -5.29 Total: -73.81 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.01 Total: -4.31 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.10 Total: -11.82 kcal Total: -68.89 1.79 -67.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602928561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.618 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds