Wall clock time and date at job start Tue Mar 31 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 113.37759 * 2 1 4 4 C 1.53511 * 114.17099 * 133.07899 * 2 1 3 5 5 N 1.47490 * 87.92998 * 87.62374 * 4 2 1 6 6 C 1.46898 * 110.99878 * 138.70009 * 5 4 2 7 7 C 1.53006 * 109.47006 * 91.52513 * 6 5 4 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 6 5 9 9 S 1.80999 * 109.47017 * 179.97438 * 8 7 6 10 10 C 1.76202 * 99.99745 * 180.02562 * 9 8 7 11 11 H 1.07993 * 120.00485 * 0.02562 * 10 9 8 12 12 C 1.38806 * 119.99444 * 180.02562 * 10 9 8 13 13 N 1.31623 * 120.00505 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99420 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47223 * 59.99791 * 14 12 10 16 16 H 1.48500 * 109.46822 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47235 * 299.99614 * 14 12 10 18 18 C 1.47480 * 87.83445 * 27.00926 * 5 4 2 19 19 H 1.09003 * 113.47639 * 87.75465 * 18 5 4 20 20 C 1.50701 * 113.47559 * 218.22222 * 18 5 4 21 21 C 1.34510 * 125.79213 * 200.49413 * 20 18 5 22 22 C 1.41379 * 106.84201 * 180.02562 * 21 20 18 23 23 C 1.34516 * 106.83959 * 0.02562 * 22 21 20 24 24 O 1.34293 * 108.42048 * 359.73342 * 23 22 21 25 25 H 1.09003 * 109.47343 * 306.41856 * 1 2 3 26 26 H 1.09002 * 109.47692 * 66.42330 * 1 2 3 27 27 H 1.09002 * 109.47121 * 186.42531 * 1 2 3 28 28 H 1.09003 * 109.46230 * 173.57593 * 3 2 1 29 29 H 1.08998 * 109.47104 * 293.57306 * 3 2 1 30 30 H 1.08994 * 109.47326 * 53.57810 * 3 2 1 31 31 H 1.08996 * 113.47821 * 332.86121 * 4 2 1 32 32 H 1.08997 * 113.52952 * 202.39875 * 4 2 1 33 33 H 1.09001 * 109.47062 * 331.52767 * 6 5 4 34 34 H 1.08993 * 109.47084 * 211.52214 * 6 5 4 35 35 H 1.09001 * 109.46801 * 300.00064 * 7 6 5 36 36 H 1.09001 * 109.46998 * 59.99660 * 7 6 5 37 37 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 38 38 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 39 39 H 0.96998 * 120.00447 * 180.02562 * 13 12 10 40 40 H 1.07996 * 126.57780 * 0.03833 * 21 20 18 41 41 H 1.08005 * 126.57965 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.78590 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1371 1.4044 0.0000 4 6 2.1586 -0.9566 1.0230 5 7 2.0810 -2.0161 -0.0001 6 6 3.2986 -2.8380 -0.0002 7 6 3.1075 -4.0326 0.9365 8 6 4.3754 -4.8890 0.9359 9 16 4.1497 -6.3018 2.0445 10 6 5.7135 -7.0915 1.8561 11 1 6.4578 -6.6659 1.1994 12 6 5.9889 -8.2606 2.5518 13 7 5.0821 -8.7791 3.3526 14 14 7.6471 -9.0973 2.3526 15 1 8.7250 -8.1667 2.7739 16 1 7.6900 -10.3183 3.1967 17 1 7.8448 -9.4718 0.9293 18 6 2.1586 -0.9565 -1.0230 19 1 3.1797 -0.6904 -1.2960 20 6 1.2822 -1.2140 -2.2217 21 6 1.4287 -0.6574 -3.4374 22 6 0.3966 -1.1761 -4.2525 23 6 -0.3194 -2.0183 -3.4859 24 8 0.2249 -2.0414 -2.2584 25 1 -0.3634 0.6101 0.8270 26 1 -0.3634 0.4110 -0.9419 27 1 -0.3633 -1.0212 0.1150 28 1 3.2187 1.3325 0.1150 29 1 1.9040 1.9010 -0.9419 30 1 1.7213 1.9800 0.8269 31 1 1.5247 -1.1429 1.8899 32 1 3.1797 -0.6912 1.2967 33 1 4.1417 -2.2384 0.3431 34 1 3.4950 -3.1963 -1.0106 35 1 2.9111 -3.6743 1.9470 36 1 2.2644 -4.6322 0.5933 37 1 4.5714 -5.2472 -0.0746 38 1 5.2188 -4.2896 1.2790 39 1 5.2746 -9.5959 3.8390 40 1 2.1891 0.0498 -3.7340 41 1 0.2168 -0.9407 -5.2911 42 1 -1.1824 -2.5838 -3.8049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602928562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:27 Heat of formation + Delta-G solvation = 34.032288 kcal Electronic energy + Delta-G solvation = -21216.602099 eV Core-core repulsion = 18097.218708 eV Total energy + Delta-G solvation = -3119.383390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.69513 -40.67720 -34.74597 -33.01677 -32.41472 -31.77741 -30.35915 -27.68592 -26.84739 -25.70323 -25.47834 -22.86364 -21.72693 -20.79848 -20.74057 -18.77361 -17.48227 -17.20976 -16.29881 -15.82307 -15.52416 -15.25614 -14.78528 -14.41303 -14.06370 -13.74877 -13.49542 -13.46055 -13.00711 -12.86332 -12.73341 -12.55155 -12.34649 -12.23423 -11.98640 -11.58048 -11.34336 -11.22633 -11.04050 -10.96978 -10.69923 -10.62004 -10.50635 -10.26813 -9.94541 -9.51926 -9.03092 -9.00620 -8.47461 -8.26939 -6.49675 -6.20177 -3.90251 1.68171 2.52099 2.97017 3.22874 3.24578 3.29097 3.54543 3.84854 3.98968 4.25058 4.45528 4.70208 4.82277 4.92827 4.96317 4.98042 5.04263 5.14292 5.15625 5.33121 5.38735 5.41160 5.48129 5.58728 5.64692 5.70918 5.73931 5.78308 5.80427 5.81845 5.86264 5.91632 6.00007 6.11903 6.17078 6.23318 6.39847 6.43900 6.65177 6.78077 6.96570 7.20339 7.62360 8.38700 9.25721 10.87982 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002890 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.335673 B = 9686.146200 C =10209.883203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 C -0.137 4.137 4 C 0.004 3.996 5 N -0.454 5.454 6 C 0.024 3.976 7 C -0.086 4.086 8 C -0.113 4.113 9 S -0.131 6.131 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.104 3.896 19 H 0.104 0.896 20 C 0.024 3.976 21 C -0.220 4.220 22 C -0.217 4.217 23 C -0.046 4.046 24 O -0.152 6.152 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.268 0.732 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 20.976 -11.022 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.080 4.080 3 C -0.195 4.195 4 C -0.125 4.125 5 N -0.176 5.176 6 C -0.106 4.106 7 C -0.125 4.125 8 C -0.262 4.262 9 S 0.097 5.903 10 C -0.666 4.666 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.005 4.005 19 H 0.121 0.879 20 C -0.027 4.027 21 C -0.239 4.239 22 C -0.237 4.237 23 C -0.115 4.115 24 O -0.046 6.046 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.569 19.808 -9.988 24.573 hybrid contribution 2.996 0.242 -1.269 3.262 sum -7.573 20.051 -11.257 24.210 Atomic orbital electron populations 1.21474 0.91757 1.03140 1.01380 1.22109 0.97084 0.93896 0.94942 1.21733 1.00403 0.95018 1.02354 1.24042 1.00818 0.90908 0.96721 1.68918 1.35298 1.10678 1.02685 1.22798 0.90527 0.96174 1.01123 1.21112 0.97762 0.94537 0.99047 1.23244 0.99110 1.00864 1.03001 1.84647 1.24631 1.24096 1.56884 1.22659 0.99855 1.12171 1.31867 0.91072 1.25011 0.97969 0.96202 0.94592 1.70011 1.33722 1.20375 1.26440 0.86231 0.82415 0.78583 0.78337 1.19962 1.20809 1.19940 1.22154 0.96283 0.93474 0.88624 0.87864 1.21926 0.90284 0.94480 0.96039 1.21492 1.03101 1.06313 0.93033 1.21753 0.98436 1.02337 1.01136 1.24068 1.01249 1.03298 0.82858 1.84140 1.36266 1.52343 1.31851 0.92293 0.92624 0.90921 0.92350 0.92101 0.91775 0.89020 0.90780 0.93652 0.90981 0.91658 0.90849 0.92250 0.92402 0.92263 0.83925 0.83806 0.78408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.04 37.16 0.30 -0.85 16 2 C -0.08 -0.74 1.43 -153.98 -0.22 -0.96 16 3 C -0.14 -0.99 9.25 37.16 0.34 -0.65 16 4 C 0.00 0.04 6.84 -7.53 -0.05 -0.01 16 5 N -0.45 -5.82 5.85 -237.82 -1.39 -7.22 16 6 C 0.02 0.33 4.78 -3.82 -0.02 0.31 16 7 C -0.09 -1.49 5.53 -26.73 -0.15 -1.63 16 8 C -0.11 -2.36 5.67 37.16 0.21 -2.14 16 9 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 10 C -0.52 -15.13 9.50 30.94 0.29 -14.83 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 14 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.10 1.13 3.05 -72.58 -0.22 0.91 16 19 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 20 C 0.02 0.29 5.29 -35.63 -0.19 0.10 16 21 C -0.22 -2.35 10.81 -39.71 -0.43 -2.78 16 22 C -0.22 -2.17 10.91 -39.70 -0.43 -2.60 16 23 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 24 O -0.15 -1.96 10.12 5.73 0.06 -1.90 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.54 7.74 -51.93 -0.40 0.13 16 27 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 28 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.07 0.72 7.33 -51.93 -0.38 0.34 16 33 H 0.05 0.58 7.35 -51.93 -0.38 0.20 16 34 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 38 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -32.59 359.74 -9.82 -42.41 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.01 Total: -0.71 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -0.30 Total: -23.29 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: -0.66 Total: -32.88 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: 0.06 Total: -1.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.59 -9.82 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602928562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.438 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds