Wall clock time and date at job start Tue Mar 31 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 113.37759 * 2 1 4 4 C 1.53511 * 114.17099 * 133.07899 * 2 1 3 5 5 N 1.47490 * 87.92998 * 87.62374 * 4 2 1 6 6 C 1.46898 * 110.99878 * 138.70009 * 5 4 2 7 7 C 1.53006 * 109.47006 * 91.52513 * 6 5 4 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 6 5 9 9 S 1.80999 * 109.47017 * 179.97438 * 8 7 6 10 10 C 1.76202 * 99.99745 * 180.02562 * 9 8 7 11 11 H 1.07993 * 120.00485 * 0.02562 * 10 9 8 12 12 C 1.38806 * 119.99444 * 180.02562 * 10 9 8 13 13 N 1.31623 * 120.00505 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99420 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47223 * 59.99791 * 14 12 10 16 16 H 1.48500 * 109.46822 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47235 * 299.99614 * 14 12 10 18 18 C 1.47480 * 87.83445 * 27.00926 * 5 4 2 19 19 H 1.09003 * 113.47639 * 87.75465 * 18 5 4 20 20 C 1.50701 * 113.47559 * 218.22222 * 18 5 4 21 21 C 1.34510 * 125.79213 * 200.49413 * 20 18 5 22 22 C 1.41379 * 106.84201 * 180.02562 * 21 20 18 23 23 C 1.34516 * 106.83959 * 0.02562 * 22 21 20 24 24 O 1.34293 * 108.42048 * 359.73342 * 23 22 21 25 25 H 1.09003 * 109.47343 * 306.41856 * 1 2 3 26 26 H 1.09002 * 109.47692 * 66.42330 * 1 2 3 27 27 H 1.09002 * 109.47121 * 186.42531 * 1 2 3 28 28 H 1.09003 * 109.46230 * 173.57593 * 3 2 1 29 29 H 1.08998 * 109.47104 * 293.57306 * 3 2 1 30 30 H 1.08994 * 109.47326 * 53.57810 * 3 2 1 31 31 H 1.08996 * 113.47821 * 332.86121 * 4 2 1 32 32 H 1.08997 * 113.52952 * 202.39875 * 4 2 1 33 33 H 1.09001 * 109.47062 * 331.52767 * 6 5 4 34 34 H 1.08993 * 109.47084 * 211.52214 * 6 5 4 35 35 H 1.09001 * 109.46801 * 300.00064 * 7 6 5 36 36 H 1.09001 * 109.46998 * 59.99660 * 7 6 5 37 37 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 38 38 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 39 39 H 0.96998 * 120.00447 * 180.02562 * 13 12 10 40 40 H 1.07996 * 126.57780 * 0.03833 * 21 20 18 41 41 H 1.08005 * 126.57965 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.78590 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1371 1.4044 0.0000 4 6 2.1586 -0.9566 1.0230 5 7 2.0810 -2.0161 -0.0001 6 6 3.2986 -2.8380 -0.0002 7 6 3.1075 -4.0326 0.9365 8 6 4.3754 -4.8890 0.9359 9 16 4.1497 -6.3018 2.0445 10 6 5.7135 -7.0915 1.8561 11 1 6.4578 -6.6659 1.1994 12 6 5.9889 -8.2606 2.5518 13 7 5.0821 -8.7791 3.3526 14 14 7.6471 -9.0973 2.3526 15 1 8.7250 -8.1667 2.7739 16 1 7.6900 -10.3183 3.1967 17 1 7.8448 -9.4718 0.9293 18 6 2.1586 -0.9565 -1.0230 19 1 3.1797 -0.6904 -1.2960 20 6 1.2822 -1.2140 -2.2217 21 6 1.4287 -0.6574 -3.4374 22 6 0.3966 -1.1761 -4.2525 23 6 -0.3194 -2.0183 -3.4859 24 8 0.2249 -2.0414 -2.2584 25 1 -0.3634 0.6101 0.8270 26 1 -0.3634 0.4110 -0.9419 27 1 -0.3633 -1.0212 0.1150 28 1 3.2187 1.3325 0.1150 29 1 1.9040 1.9010 -0.9419 30 1 1.7213 1.9800 0.8269 31 1 1.5247 -1.1429 1.8899 32 1 3.1797 -0.6912 1.2967 33 1 4.1417 -2.2384 0.3431 34 1 3.4950 -3.1963 -1.0106 35 1 2.9111 -3.6743 1.9470 36 1 2.2644 -4.6322 0.5933 37 1 4.5714 -5.2472 -0.0746 38 1 5.2188 -4.2896 1.2790 39 1 5.2746 -9.5959 3.8390 40 1 2.1891 0.0498 -3.7340 41 1 0.2168 -0.9407 -5.2911 42 1 -1.1824 -2.5838 -3.8049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602928562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:27 Heat of formation + Delta-G solvation = 14.181003 kcal Electronic energy + Delta-G solvation = -21217.462915 eV Core-core repulsion = 18097.218708 eV Total energy + Delta-G solvation = -3120.244207 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.50852 -41.53219 -35.95621 -34.61766 -33.82928 -32.84898 -31.16884 -28.36132 -28.18660 -27.54055 -26.48947 -24.04787 -22.59554 -21.99260 -21.55632 -19.60260 -19.52320 -18.04791 -17.19222 -16.90935 -16.88602 -16.55642 -16.18202 -15.85189 -15.51880 -14.82294 -14.48261 -14.42389 -14.22810 -13.74599 -13.62516 -13.50331 -13.45125 -13.31260 -13.00916 -12.92403 -12.90435 -12.64378 -12.60685 -12.34829 -12.04419 -11.83246 -11.56579 -11.36924 -11.22944 -11.14600 -10.73554 -10.34435 -9.93041 -9.26881 -8.69063 -8.38222 -6.15442 0.87363 1.30025 1.40178 1.46902 1.71449 1.75997 2.22150 2.27316 2.89102 2.95726 3.21989 3.31361 3.67815 3.86919 3.94853 3.96808 4.14288 4.22394 4.25471 4.29592 4.34307 4.37092 4.41174 4.68306 4.69857 4.71902 4.78459 4.82224 4.91778 5.00771 5.02617 5.06481 5.09794 5.12549 5.22850 5.26300 5.31249 5.37641 5.38629 5.48914 5.68301 6.00720 6.16591 6.39269 7.03326 8.71151 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002890 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.335673 B = 9686.146200 C =10209.883203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 C -0.133 4.133 4 C 0.001 3.999 5 N -0.478 5.478 6 C 0.036 3.964 7 C -0.073 4.073 8 C -0.086 4.086 9 S -0.200 6.200 10 C -0.540 4.540 11 H 0.073 0.927 12 C 0.015 3.985 13 N -0.908 5.908 14 Si 0.995 3.005 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.265 1.265 18 C 0.104 3.896 19 H 0.117 0.883 20 C 0.002 3.998 21 C -0.223 4.223 22 C -0.224 4.224 23 C -0.057 4.057 24 O -0.179 6.179 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.272 0.728 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 22.571 -12.157 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.190 4.190 4 C -0.127 4.127 5 N -0.199 5.199 6 C -0.094 4.094 7 C -0.112 4.112 8 C -0.236 4.236 9 S 0.029 5.971 10 C -0.688 4.688 11 H 0.091 0.909 12 C -0.190 4.190 13 N -0.544 5.544 14 Si 0.817 3.183 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.005 4.005 19 H 0.135 0.865 20 C -0.049 4.049 21 C -0.242 4.242 22 C -0.243 4.243 23 C -0.125 4.125 24 O -0.074 6.074 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.411 21.421 -11.128 25.909 hybrid contribution 2.528 -0.197 -0.968 2.714 sum -6.883 21.224 -12.097 25.380 Atomic orbital electron populations 1.21410 0.92220 1.01827 1.01801 1.22058 0.96658 0.94812 0.93407 1.21715 1.00810 0.93407 1.03096 1.24132 1.01598 0.90574 0.96413 1.68874 1.34561 1.11994 1.04514 1.22589 0.91913 0.95185 0.99722 1.20966 0.95219 0.95139 0.99885 1.23154 1.01131 0.98385 1.00920 1.84694 1.25147 1.27717 1.59542 1.23015 1.00384 1.13029 1.32357 0.90869 1.26101 1.02359 0.96724 0.93836 1.70151 1.36093 1.20927 1.27271 0.85050 0.76962 0.77540 0.78764 1.18752 1.19898 1.18939 1.22298 0.97032 0.92899 0.88279 0.86534 1.22205 0.90638 0.95164 0.96898 1.21814 1.03491 1.06233 0.92699 1.22101 0.98067 1.02001 1.02143 1.24722 1.01961 1.03609 0.82174 1.84120 1.36989 1.53106 1.33219 0.90889 0.92829 0.93341 0.91495 0.91513 0.90832 0.89640 0.89505 0.91975 0.91406 0.91924 0.92580 0.92245 0.91589 0.91916 0.82208 0.81648 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.04 71.98 0.58 -1.53 16 2 C -0.07 -1.17 1.43 -51.84 -0.07 -1.24 16 3 C -0.13 -1.55 9.25 71.98 0.67 -0.89 16 4 C 0.00 0.02 6.84 83.58 0.57 0.59 16 5 N -0.48 -11.92 5.85 -906.32 -5.30 -17.23 16 6 C 0.04 0.97 4.78 86.31 0.41 1.39 16 7 C -0.07 -2.54 5.53 30.60 0.17 -2.37 16 8 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 9 S -0.20 -11.01 21.44 -56.49 -1.21 -12.22 16 10 C -0.54 -31.91 9.50 67.96 0.65 -31.26 16 11 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 12 C 0.01 0.85 5.49 84.86 0.47 1.32 16 13 N -0.91 -55.87 13.22 21.65 0.29 -55.59 16 14 Si 1.00 44.46 29.55 68.60 2.03 46.48 16 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 C 0.10 2.12 3.05 41.44 0.13 2.25 16 19 H 0.12 2.02 7.87 -2.39 -0.02 2.00 16 20 C 0.00 0.04 5.29 24.83 0.13 0.18 16 21 C -0.22 -4.42 10.81 22.19 0.24 -4.18 16 22 C -0.22 -4.12 10.91 22.19 0.24 -3.88 16 23 C -0.06 -1.12 12.09 66.97 0.81 -0.31 16 24 O -0.18 -4.61 10.12 -2.41 -0.02 -4.63 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 0.99 7.74 -2.39 -0.02 0.97 16 27 H 0.05 1.12 7.73 -2.39 -0.02 1.10 16 28 H 0.07 0.69 8.03 -2.39 -0.02 0.67 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.09 1.50 7.33 -2.39 -0.02 1.48 16 33 H 0.06 1.47 7.35 -2.39 -0.02 1.45 16 34 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 38 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.23 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -71.27 359.74 2.14 -69.13 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.97 Total: 17.20 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 5.39 Total: -43.15 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -5.02 Total: -72.81 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.02 Total: -4.63 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -1.21 Total: -12.22 kcal Total: -71.27 2.14 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602928562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.307 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds