Wall clock time and date at job start Tue Mar 31 2020 06:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 10 10 C 1.52990 * 109.47304 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47395 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00285 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99484 * 359.97438 * 11 10 9 14 14 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 15 15 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 16 16 C 1.46503 * 125.97580 * 359.97438 * 15 2 1 17 17 C 1.50699 * 109.47232 * 270.00070 * 16 15 2 18 18 H 1.08004 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47357 * 90.00225 * 21 19 17 23 23 H 1.48502 * 109.46910 * 210.00009 * 21 19 17 24 24 H 1.48502 * 109.47436 * 330.00267 * 21 19 17 25 25 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 26 26 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 27 27 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 28 28 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 29 29 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 30 30 H 0.97000 * 119.99736 * 0.26820 * 8 6 5 31 31 H 1.08998 * 109.46795 * 299.99885 * 9 8 6 32 32 H 1.09002 * 109.47196 * 59.99076 * 9 8 6 33 33 H 1.09006 * 109.47037 * 299.99466 * 10 9 8 34 34 H 1.09002 * 109.47663 * 59.99467 * 10 9 8 35 35 H 0.97000 * 119.99736 * 359.97438 * 12 11 10 36 36 H 0.96999 * 120.00043 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47222 * 29.99739 * 16 15 2 38 38 H 1.08997 * 109.47398 * 150.00005 * 16 15 2 39 39 H 0.97000 * 119.99662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 5.5813 5.0621 -0.0152 10 6 6.9645 5.7158 -0.0129 11 6 6.8117 7.2150 -0.0136 12 7 7.9045 8.0039 -0.0123 13 8 5.7052 7.7117 -0.0162 14 7 3.6337 -0.6576 0.0035 15 7 2.3017 -1.0909 0.0059 16 6 1.8501 -2.4846 0.0140 17 6 1.6957 -2.9544 1.4375 18 1 1.9120 -2.2819 2.2546 19 6 1.2775 -4.2423 1.6970 20 7 1.0127 -5.0606 0.7021 21 14 1.0869 -4.8248 3.4616 22 1 -0.2953 -4.5469 3.9280 23 1 1.3489 -6.2848 3.5319 24 1 2.0554 -4.1057 4.3276 25 1 -0.3632 0.0056 1.0277 26 1 -0.3633 0.8871 -0.5187 27 1 -0.3633 -0.8927 -0.5089 28 1 1.9721 2.1210 0.0004 29 1 5.6588 1.0777 -0.0066 30 1 6.6148 3.2074 -0.0122 31 1 5.0347 5.3707 -0.9063 32 1 5.0317 5.3721 0.8736 33 1 7.5107 5.4071 0.8785 34 1 7.5145 5.4058 -0.9015 35 1 8.7894 7.6066 -0.0106 36 1 7.8060 8.9688 -0.0131 37 1 0.8912 -2.5588 -0.4990 38 1 2.5845 -3.1075 -0.4966 39 1 0.7188 -5.9668 0.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611481207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:21 Heat of formation + Delta-G solvation = 5.688866 kcal Electronic energy + Delta-G solvation = -22596.000118 eV Core-core repulsion = 18961.387201 eV Total energy + Delta-G solvation = -3634.612917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73936 -40.04087 -39.41856 -35.55398 -34.64610 -34.14245 -33.34913 -31.63471 -31.00143 -30.39660 -26.64203 -26.28186 -24.63892 -22.93802 -21.50087 -21.01037 -19.83523 -19.56289 -18.04894 -17.35342 -17.30311 -16.65635 -16.35970 -16.17682 -15.42053 -15.29680 -14.76094 -14.35350 -14.26299 -14.04497 -13.84490 -13.65870 -12.93066 -12.44375 -12.27305 -12.24176 -12.23040 -11.86782 -11.61693 -11.35877 -11.06711 -10.80629 -10.48726 -10.41000 -10.22344 -10.18191 -9.97714 -9.62656 -9.50830 -9.21954 -8.61894 -7.86874 -7.36050 -6.22885 -4.30207 2.17615 2.30870 2.69116 3.08127 3.14781 3.23025 3.29282 3.35019 3.67561 3.88047 4.19646 4.30339 4.39232 4.58657 4.59541 4.95784 5.10736 5.44653 5.56993 5.70924 5.76911 5.96770 6.16908 6.22501 6.28022 6.28214 6.50988 6.61983 6.67095 6.80384 6.99109 7.09191 7.16685 7.56914 7.70175 7.78169 7.92143 7.98051 8.11372 8.62957 8.71397 8.79387 9.35859 10.84260 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.002466 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.752444 B =11353.574523 C =11615.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.712 3.288 7 O -0.561 6.561 8 N -0.747 5.747 9 C 0.154 3.846 10 C -0.156 4.156 11 C 0.521 3.479 12 N -0.857 5.857 13 O -0.535 6.535 14 N -0.324 5.324 15 N -0.319 5.319 16 C 0.259 3.741 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.406 0.594 30 H 0.396 0.604 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.403 0.597 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.740 20.154 -2.637 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.294 5.294 6 C 0.411 3.589 7 O -0.436 6.436 8 N -0.405 5.405 9 C 0.029 3.971 10 C -0.196 4.196 11 C 0.305 3.695 12 N -0.421 5.421 13 O -0.410 6.410 14 N -0.155 5.155 15 N -0.101 5.101 16 C 0.141 3.859 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.197 1.197 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.178 0.822 29 H 0.240 0.760 30 H 0.229 0.771 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.230 0.770 36 H 0.234 0.766 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.524 19.407 -2.689 23.807 hybrid contribution 1.001 -0.004 0.968 1.393 sum 14.526 19.403 -1.720 24.299 Atomic orbital electron populations 1.20328 0.87925 1.02793 1.03138 1.21059 0.94889 0.87162 1.00956 1.21248 0.89714 0.99855 1.21183 1.18655 0.86564 0.89245 1.02687 1.41370 1.07570 1.03674 1.76750 1.15580 0.84695 0.80386 0.78193 1.90900 1.23476 1.73410 1.55801 1.44952 1.07618 1.06407 1.81488 1.20846 0.94775 0.77105 1.04349 1.21816 1.00057 0.92337 1.05392 1.20383 0.84456 0.89415 0.75208 1.43870 1.09060 1.10765 1.78454 1.90827 1.25296 1.76392 1.48503 1.77236 0.99957 1.08307 1.30009 1.48950 1.00890 1.07719 1.52560 1.19669 0.95944 0.71404 0.98864 1.21330 1.46595 0.97928 0.91415 0.91769 1.24930 0.94742 0.96072 0.98117 1.69921 1.45004 1.06977 1.31130 0.86355 0.78666 0.77837 0.83822 1.20305 1.20915 1.19731 0.90458 0.90809 0.90911 0.82204 0.75985 0.77087 0.90446 0.90445 0.87900 0.87904 0.76990 0.76648 0.92815 0.93056 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.11 36.01 0.36 -1.11 16 2 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 3 C -0.29 -6.17 9.52 -39.83 -0.38 -6.55 16 4 C 0.28 5.87 8.11 -154.36 -1.25 4.61 16 5 N -0.64 -10.08 5.46 -15.51 -0.08 -10.16 16 6 C 0.71 10.73 8.53 -86.92 -0.74 9.99 16 7 O -0.56 -10.75 13.47 5.28 0.07 -10.68 16 8 N -0.75 -7.15 5.56 -65.23 -0.36 -7.51 16 9 C 0.15 1.44 4.96 -4.05 -0.02 1.42 16 10 C -0.16 -0.73 5.81 -27.89 -0.16 -0.89 16 11 C 0.52 3.68 8.10 -10.98 -0.09 3.59 16 12 N -0.86 -2.66 8.87 31.22 0.28 -2.38 16 13 O -0.53 -6.62 16.82 5.55 0.09 -6.53 16 14 N -0.32 -7.59 12.59 31.44 0.40 -7.19 16 15 N -0.32 -7.70 3.59 -58.32 -0.21 -7.91 16 16 C 0.26 6.72 5.99 -5.19 -0.03 6.69 16 17 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 18 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 21 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 28 H 0.16 3.39 5.91 -52.49 -0.31 3.08 16 29 H 0.41 4.91 8.84 -40.82 -0.36 4.55 16 30 H 0.40 2.25 8.49 -40.82 -0.35 1.91 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.40 -0.06 8.83 -40.82 -0.36 -0.42 16 36 H 0.40 1.11 8.93 -40.82 -0.36 0.75 16 37 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -37.55 341.55 -7.23 -44.78 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.97 Total: 5.02 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -3.30 Total: 5.64 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.75 Total: -59.63 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.16 Total: -17.21 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.55 -7.23 -44.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.472 kcal (2) G-P(sol) polarization free energy of solvation -37.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds