Wall clock time and date at job start Tue Mar 31 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 10 10 C 1.52990 * 109.47304 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47395 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00285 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99484 * 359.97438 * 11 10 9 14 14 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 15 15 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 16 16 C 1.46503 * 125.97580 * 359.97438 * 15 2 1 17 17 C 1.50699 * 109.47232 * 270.00070 * 16 15 2 18 18 H 1.08004 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47357 * 90.00225 * 21 19 17 23 23 H 1.48502 * 109.46910 * 210.00009 * 21 19 17 24 24 H 1.48502 * 109.47436 * 330.00267 * 21 19 17 25 25 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 26 26 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 27 27 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 28 28 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 29 29 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 30 30 H 0.97000 * 119.99736 * 0.26820 * 8 6 5 31 31 H 1.08998 * 109.46795 * 299.99885 * 9 8 6 32 32 H 1.09002 * 109.47196 * 59.99076 * 9 8 6 33 33 H 1.09006 * 109.47037 * 299.99466 * 10 9 8 34 34 H 1.09002 * 109.47663 * 59.99467 * 10 9 8 35 35 H 0.97000 * 119.99736 * 359.97438 * 12 11 10 36 36 H 0.96999 * 120.00043 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47222 * 29.99739 * 16 15 2 38 38 H 1.08997 * 109.47398 * 150.00005 * 16 15 2 39 39 H 0.97000 * 119.99662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 5.5813 5.0621 -0.0152 10 6 6.9645 5.7158 -0.0129 11 6 6.8117 7.2150 -0.0136 12 7 7.9045 8.0039 -0.0123 13 8 5.7052 7.7117 -0.0162 14 7 3.6337 -0.6576 0.0035 15 7 2.3017 -1.0909 0.0059 16 6 1.8501 -2.4846 0.0140 17 6 1.6957 -2.9544 1.4375 18 1 1.9120 -2.2819 2.2546 19 6 1.2775 -4.2423 1.6970 20 7 1.0127 -5.0606 0.7021 21 14 1.0869 -4.8248 3.4616 22 1 -0.2953 -4.5469 3.9280 23 1 1.3489 -6.2848 3.5319 24 1 2.0554 -4.1057 4.3276 25 1 -0.3632 0.0056 1.0277 26 1 -0.3633 0.8871 -0.5187 27 1 -0.3633 -0.8927 -0.5089 28 1 1.9721 2.1210 0.0004 29 1 5.6588 1.0777 -0.0066 30 1 6.6148 3.2074 -0.0122 31 1 5.0347 5.3707 -0.9063 32 1 5.0317 5.3721 0.8736 33 1 7.5107 5.4071 0.8785 34 1 7.5145 5.4058 -0.9015 35 1 8.7894 7.6066 -0.0106 36 1 7.8060 8.9688 -0.0131 37 1 0.8912 -2.5588 -0.4990 38 1 2.5845 -3.1075 -0.4966 39 1 0.7188 -5.9668 0.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611481207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:20 Heat of formation + Delta-G solvation = -25.790724 kcal Electronic energy + Delta-G solvation = -22597.365175 eV Core-core repulsion = 18961.387201 eV Total energy + Delta-G solvation = -3635.977974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29866 -41.03408 -40.37531 -36.66243 -36.04281 -35.28841 -34.63279 -33.12901 -32.62813 -31.45845 -28.53306 -27.85846 -25.66677 -24.68805 -22.78318 -21.70764 -21.21481 -21.01554 -19.17181 -18.76182 -18.04243 -17.94097 -17.53628 -17.13935 -17.05695 -16.41999 -16.23598 -15.81074 -15.67568 -15.35964 -14.70820 -14.59477 -14.41725 -14.26619 -13.78832 -13.68796 -13.50636 -13.13285 -12.88791 -12.84831 -12.64867 -12.48712 -12.24206 -12.08232 -11.58488 -11.34747 -11.22163 -11.04263 -10.71788 -10.62580 -10.22844 -9.54799 -9.06392 -8.31065 -6.48683 1.02562 1.09680 1.39036 1.39502 1.51218 1.66787 1.67567 2.04287 2.35958 2.39979 2.68360 2.98255 3.24653 3.68075 3.88080 4.13938 4.18605 4.21518 4.45390 4.59859 4.73292 4.76131 4.89797 4.91122 4.92347 5.02666 5.03369 5.15728 5.22641 5.42782 5.55452 5.82880 5.89559 5.93634 5.99159 6.28406 6.50598 6.63095 6.78064 7.15537 7.22036 7.39211 7.45110 8.74591 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.002466 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.752444 B =11353.574523 C =11615.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.300 4.300 4 C 0.292 3.708 5 N -0.632 5.632 6 C 0.709 3.291 7 O -0.604 6.604 8 N -0.716 5.716 9 C 0.153 3.847 10 C -0.140 4.140 11 C 0.516 3.484 12 N -0.836 5.836 13 O -0.599 6.599 14 N -0.357 5.357 15 N -0.343 5.343 16 C 0.275 3.725 17 C -0.552 4.552 18 H 0.049 0.951 19 C 0.022 3.978 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.276 1.276 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.163 0.837 29 H 0.424 0.576 30 H 0.420 0.580 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.421 0.579 36 H 0.406 0.594 37 H 0.052 0.948 38 H 0.026 0.974 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.579 20.859 -1.910 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.037 3.963 5 N -0.285 5.285 6 C 0.408 3.592 7 O -0.482 6.482 8 N -0.374 5.374 9 C 0.029 3.971 10 C -0.180 4.180 11 C 0.301 3.699 12 N -0.400 5.400 13 O -0.480 6.480 14 N -0.188 5.188 15 N -0.126 5.126 16 C 0.156 3.844 17 C -0.590 4.590 18 H 0.067 0.933 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.201 1.201 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.180 0.820 29 H 0.261 0.739 30 H 0.258 0.742 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.253 0.747 36 H 0.237 0.763 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.501 20.135 -1.972 25.487 hybrid contribution 0.539 -0.079 0.696 0.884 sum 16.040 20.056 -1.275 25.713 Atomic orbital electron populations 1.20461 0.85438 1.04153 1.03921 1.21714 0.96617 0.86481 0.99528 1.21399 0.90208 0.99790 1.21716 1.18938 0.88075 0.88919 1.00368 1.41311 1.07083 1.03599 1.76475 1.15826 0.85345 0.80196 0.77869 1.90870 1.25667 1.74007 1.57623 1.44678 1.07333 1.06109 1.79298 1.20819 0.97611 0.76605 1.02083 1.21751 0.97395 0.90187 1.08652 1.20796 0.84173 0.90584 0.74332 1.43715 1.09162 1.10838 1.76238 1.90812 1.27831 1.77540 1.51848 1.77157 0.99970 1.09593 1.32076 1.48761 1.01691 1.07444 1.54698 1.19247 0.94949 0.72403 0.97767 1.21433 1.47451 0.98347 0.91772 0.93297 1.25734 0.93994 0.95905 1.02269 1.70002 1.45084 1.07423 1.33095 0.85351 0.78923 0.77554 0.78618 1.19043 1.19860 1.20087 0.89843 0.87755 0.91174 0.81961 0.73855 0.74222 0.92806 0.92974 0.84575 0.84452 0.74707 0.76267 0.93041 0.95627 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.85 10.11 71.24 0.72 -2.13 16 2 C 0.09 3.80 6.93 41.39 0.29 4.09 16 3 C -0.30 -12.88 9.52 22.11 0.21 -12.67 16 4 C 0.29 12.16 8.11 133.31 1.08 13.24 16 5 N -0.63 -19.15 5.46 -321.23 -1.75 -20.90 16 6 C 0.71 20.65 8.53 179.05 1.53 22.18 16 7 O -0.60 -23.22 13.47 -4.01 -0.05 -23.28 16 8 N -0.72 -12.17 5.56 -478.55 -2.66 -14.83 16 9 C 0.15 2.70 4.96 86.38 0.43 3.13 16 10 C -0.14 -0.87 5.81 29.85 0.17 -0.70 16 11 C 0.52 6.43 8.10 87.66 0.71 7.14 16 12 N -0.84 -3.06 8.87 -173.53 -1.54 -4.60 16 13 O -0.60 -15.07 16.82 -3.04 -0.05 -15.13 16 14 N -0.36 -16.96 12.59 -54.43 -0.69 -17.65 16 15 N -0.34 -16.96 3.59 -338.44 -1.22 -18.17 16 16 C 0.28 14.73 5.99 85.63 0.51 15.24 16 17 C -0.55 -31.23 9.39 25.60 0.24 -30.99 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.02 1.21 5.46 84.66 0.46 1.67 16 20 N -0.92 -52.06 13.29 21.45 0.28 -51.77 16 21 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 27 H 0.07 2.47 7.07 -2.39 -0.02 2.45 16 28 H 0.16 6.93 5.91 -2.91 -0.02 6.91 16 29 H 0.42 9.48 8.84 -92.71 -0.82 8.66 16 30 H 0.42 3.23 8.49 -92.71 -0.79 2.44 16 31 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 32 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.14 0.03 8.14 -2.38 -0.02 0.01 16 34 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.42 -1.67 8.83 -92.71 -0.82 -2.49 16 36 H 0.41 1.48 8.93 -92.71 -0.83 0.65 16 37 H 0.05 2.73 7.04 -2.39 -0.02 2.71 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -85.18 341.55 -1.41 -86.59 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -2.11 Total: 14.18 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.35 Total: 20.19 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -7.57 Total: -127.92 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.11 Total: -38.40 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -85.18 -1.41 -86.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.795 kcal (2) G-P(sol) polarization free energy of solvation -85.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds