Wall clock time and date at job start Tue Mar 31 2020 06:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35251 * 126.06647 * 2 1 4 4 C 1.40407 * 107.86588 * 180.13895 * 3 2 1 5 5 N 1.40200 * 125.97340 * 179.82791 * 4 3 2 6 6 C 1.34768 * 119.99734 * 359.71340 * 5 4 3 7 7 O 1.21590 * 120.00557 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99810 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99910 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47129 * 324.99754 * 9 8 6 11 11 C 1.52997 * 109.47473 * 85.00011 * 9 8 6 12 12 C 1.50708 * 109.47008 * 205.00179 * 9 8 6 13 13 N 1.34774 * 120.00011 * 179.97438 * 12 9 8 14 14 O 1.21282 * 119.99544 * 359.97438 * 12 9 8 15 15 N 1.31215 * 108.05413 * 359.56525 * 4 3 2 16 16 N 1.34965 * 126.07609 * 179.65706 * 2 1 3 17 17 C 1.46498 * 125.97526 * 359.97438 * 16 2 1 18 18 C 1.50702 * 109.47060 * 270.00453 * 17 16 2 19 19 H 1.07998 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00514 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47221 * 120.00211 * 22 20 18 25 25 H 1.48496 * 109.47131 * 240.00070 * 22 20 18 26 26 H 1.09005 * 109.46741 * 270.34077 * 1 2 3 27 27 H 1.08994 * 109.47595 * 30.33940 * 1 2 3 28 28 H 1.08995 * 109.47113 * 150.34850 * 1 2 3 29 29 H 1.07998 * 126.07119 * 359.96593 * 3 2 1 30 30 H 0.96998 * 119.99792 * 179.71824 * 5 4 3 31 31 H 0.96994 * 120.00115 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 33 33 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 35 35 H 0.96998 * 120.00125 * 0.02562 * 13 12 9 36 36 H 0.96997 * 119.99962 * 180.02562 * 13 12 9 37 37 H 1.09002 * 109.46795 * 29.99782 * 17 16 2 38 38 H 1.08994 * 109.47588 * 150.00071 * 17 16 2 39 39 H 0.96997 * 120.00346 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6547 -0.0032 5 7 4.7737 1.4754 -0.0077 6 6 4.6369 2.8160 -0.0151 7 8 3.5276 3.3140 -0.0173 8 7 5.7296 3.6050 -0.0199 9 6 5.5809 5.0624 -0.0273 10 1 4.7061 5.3353 -0.6176 11 6 5.4050 5.5645 1.4072 12 6 6.8106 5.6898 -0.6319 13 7 6.8978 7.0300 -0.7435 14 8 7.7216 4.9885 -1.0181 15 7 3.6337 -0.6574 0.0044 16 7 2.3017 -1.0908 0.0065 17 6 1.8502 -2.4845 0.0154 18 6 1.6959 -2.9534 1.4392 19 1 1.9128 -2.2808 2.2559 20 6 1.2777 -4.2413 1.6994 21 7 1.0130 -5.0603 0.7050 22 14 1.0870 -4.8228 3.4643 23 1 1.4448 -3.7187 4.3907 24 1 -0.3207 -5.2319 3.7013 25 1 1.9858 -5.9803 3.7039 26 1 -0.3633 0.0061 1.0277 27 1 -0.3634 0.8868 -0.5191 28 1 -0.3633 -0.8930 -0.5084 29 1 1.9719 2.1212 -0.0005 30 1 5.6587 1.0781 -0.0056 31 1 6.6145 3.2078 -0.0184 32 1 6.2797 5.2915 1.9975 33 1 4.5156 5.1107 1.8444 34 1 5.2948 6.6489 1.4017 35 1 6.1693 7.5909 -0.4343 36 1 7.6891 7.4338 -1.1329 37 1 0.8914 -2.5590 -0.4976 38 1 2.5847 -3.1076 -0.4948 39 1 0.7185 -5.9661 0.8880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611481298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:24 Heat of formation + Delta-G solvation = 9.761714 kcal Electronic energy + Delta-G solvation = -23123.089843 eV Core-core repulsion = 19488.653538 eV Total energy + Delta-G solvation = -3634.436305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90036 -40.28213 -39.21403 -35.46133 -34.62447 -34.24014 -33.35037 -31.57463 -30.92931 -30.12170 -26.62290 -26.29226 -25.09687 -23.11685 -21.86131 -20.61494 -19.98897 -19.59010 -18.46389 -17.75411 -16.68377 -16.52250 -16.32876 -15.79228 -15.44253 -15.14884 -14.83257 -14.54324 -14.23730 -14.03154 -13.80675 -13.14642 -12.94673 -12.70565 -12.46125 -12.25699 -12.20791 -11.97154 -11.64707 -11.37262 -11.07087 -10.83123 -10.40939 -10.39379 -10.24442 -10.19569 -10.01971 -9.65471 -9.51281 -9.34583 -8.62744 -7.88585 -7.38044 -6.23359 -4.30690 2.12672 2.23116 2.66011 3.01451 3.14494 3.21656 3.29551 3.35472 3.61745 3.85196 4.24276 4.32116 4.38498 4.68304 4.79541 5.10389 5.16363 5.38868 5.47070 5.73828 5.81608 5.94180 6.13479 6.14275 6.22470 6.28676 6.48373 6.60018 6.64595 6.79508 6.97029 7.08445 7.16256 7.54448 7.69797 7.72726 7.91438 7.95681 8.10041 8.56884 8.70497 8.78827 9.35524 10.83893 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.002820 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.979061 B = 9927.478533 C =10091.542878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.641 5.641 6 C 0.718 3.282 7 O -0.567 6.567 8 N -0.730 5.730 9 C 0.146 3.854 10 H 0.119 0.881 11 C -0.162 4.162 12 C 0.517 3.483 13 N -0.849 5.849 14 O -0.537 6.537 15 N -0.323 5.323 16 N -0.318 5.318 17 C 0.258 3.742 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.408 0.592 31 H 0.406 0.594 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.404 0.596 36 H 0.405 0.595 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 23.100 -1.476 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.290 5.290 6 C 0.418 3.582 7 O -0.443 6.443 8 N -0.388 5.388 9 C 0.036 3.964 10 H 0.137 0.863 11 C -0.221 4.221 12 C 0.300 3.700 13 N -0.414 5.414 14 O -0.413 6.413 15 N -0.153 5.153 16 N -0.101 5.101 17 C 0.141 3.859 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.243 0.757 31 H 0.243 0.757 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.236 0.764 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.367 21.579 -1.721 22.867 hybrid contribution 0.419 0.282 0.919 1.049 sum 7.787 21.861 -0.802 23.220 Atomic orbital electron populations 1.20323 0.87937 1.02781 1.03118 1.21058 0.94873 0.87177 1.00991 1.21220 0.89624 0.99796 1.21340 1.18656 0.86487 0.89265 1.02760 1.41321 1.07787 1.03569 1.76364 1.15483 0.84393 0.80506 0.77858 1.90864 1.23391 1.73468 1.56567 1.44697 1.08696 1.04738 1.80717 1.20544 0.96831 0.80515 0.98483 0.86325 1.22198 1.04063 1.01323 0.94513 1.20686 0.88505 0.82922 0.77866 1.43747 1.24395 1.07068 1.66151 1.90768 1.40107 1.61686 1.48731 1.77265 0.99908 1.08321 1.29815 1.48965 1.00898 1.07754 1.52447 1.19681 0.95955 0.71398 0.98906 1.21366 1.46502 0.97948 0.91406 0.91704 1.24931 0.94737 0.96066 0.98117 1.69926 1.45071 1.06931 1.31104 0.86307 0.77834 0.78774 0.83804 1.19582 1.20662 1.20689 0.90463 0.90846 0.90908 0.82199 0.75721 0.75706 0.91758 0.90050 0.91107 0.76664 0.76386 0.92799 0.93034 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.00 0.36 -1.07 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.99 9.52 -39.83 -0.38 -6.37 16 4 C 0.28 5.85 8.11 -154.35 -1.25 4.60 16 5 N -0.64 -10.36 5.46 -15.50 -0.08 -10.44 16 6 C 0.72 10.73 8.50 -86.92 -0.74 9.99 16 7 O -0.57 -9.88 13.13 5.29 0.07 -9.81 16 8 N -0.73 -8.08 4.96 -59.81 -0.30 -8.37 16 9 C 0.15 1.25 2.98 -69.08 -0.21 1.04 16 10 H 0.12 1.03 7.58 -51.93 -0.39 0.64 16 11 C -0.16 -1.11 9.38 37.16 0.35 -0.76 16 12 C 0.52 4.26 7.49 -10.98 -0.08 4.18 16 13 N -0.85 -3.37 8.77 31.22 0.27 -3.10 16 14 O -0.54 -6.57 16.67 5.56 0.09 -6.48 16 15 N -0.32 -7.58 12.59 31.45 0.40 -7.18 16 16 N -0.32 -7.65 3.59 -58.33 -0.21 -7.86 16 17 C 0.26 6.69 5.99 -5.19 -0.03 6.66 16 18 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 19 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 22 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16 29 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 30 H 0.41 5.47 8.84 -40.82 -0.36 5.11 16 31 H 0.41 4.12 7.80 -40.82 -0.32 3.80 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.27 7.56 -51.93 -0.39 -0.13 16 35 H 0.40 0.46 8.25 -40.82 -0.34 0.12 16 36 H 0.40 1.25 8.93 -40.82 -0.36 0.89 16 37 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 38 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -35.36 338.97 -6.77 -42.13 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.87 Total: 8.13 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.97 Total: 6.16 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.82 Total: -61.45 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.16 Total: -16.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.36 -6.77 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.891 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds