Wall clock time and date at job start Tue Mar 31 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35251 * 126.06647 * 2 1 4 4 C 1.40407 * 107.86588 * 180.13895 * 3 2 1 5 5 N 1.40200 * 125.97340 * 179.82791 * 4 3 2 6 6 C 1.34768 * 119.99734 * 359.71340 * 5 4 3 7 7 O 1.21590 * 120.00557 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99810 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99910 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47129 * 324.99754 * 9 8 6 11 11 C 1.52997 * 109.47473 * 85.00011 * 9 8 6 12 12 C 1.50708 * 109.47008 * 205.00179 * 9 8 6 13 13 N 1.34774 * 120.00011 * 179.97438 * 12 9 8 14 14 O 1.21282 * 119.99544 * 359.97438 * 12 9 8 15 15 N 1.31215 * 108.05413 * 359.56525 * 4 3 2 16 16 N 1.34965 * 126.07609 * 179.65706 * 2 1 3 17 17 C 1.46498 * 125.97526 * 359.97438 * 16 2 1 18 18 C 1.50702 * 109.47060 * 270.00453 * 17 16 2 19 19 H 1.07998 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00514 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47221 * 120.00211 * 22 20 18 25 25 H 1.48496 * 109.47131 * 240.00070 * 22 20 18 26 26 H 1.09005 * 109.46741 * 270.34077 * 1 2 3 27 27 H 1.08994 * 109.47595 * 30.33940 * 1 2 3 28 28 H 1.08995 * 109.47113 * 150.34850 * 1 2 3 29 29 H 1.07998 * 126.07119 * 359.96593 * 3 2 1 30 30 H 0.96998 * 119.99792 * 179.71824 * 5 4 3 31 31 H 0.96994 * 120.00115 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 33 33 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 35 35 H 0.96998 * 120.00125 * 0.02562 * 13 12 9 36 36 H 0.96997 * 119.99962 * 180.02562 * 13 12 9 37 37 H 1.09002 * 109.46795 * 29.99782 * 17 16 2 38 38 H 1.08994 * 109.47588 * 150.00071 * 17 16 2 39 39 H 0.96997 * 120.00346 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6547 -0.0032 5 7 4.7737 1.4754 -0.0077 6 6 4.6369 2.8160 -0.0151 7 8 3.5276 3.3140 -0.0173 8 7 5.7296 3.6050 -0.0199 9 6 5.5809 5.0624 -0.0273 10 1 4.7061 5.3353 -0.6176 11 6 5.4050 5.5645 1.4072 12 6 6.8106 5.6898 -0.6319 13 7 6.8978 7.0300 -0.7435 14 8 7.7216 4.9885 -1.0181 15 7 3.6337 -0.6574 0.0044 16 7 2.3017 -1.0908 0.0065 17 6 1.8502 -2.4845 0.0154 18 6 1.6959 -2.9534 1.4392 19 1 1.9128 -2.2808 2.2559 20 6 1.2777 -4.2413 1.6994 21 7 1.0130 -5.0603 0.7050 22 14 1.0870 -4.8228 3.4643 23 1 1.4448 -3.7187 4.3907 24 1 -0.3207 -5.2319 3.7013 25 1 1.9858 -5.9803 3.7039 26 1 -0.3633 0.0061 1.0277 27 1 -0.3634 0.8868 -0.5191 28 1 -0.3633 -0.8930 -0.5084 29 1 1.9719 2.1212 -0.0005 30 1 5.6587 1.0781 -0.0056 31 1 6.6145 3.2078 -0.0184 32 1 6.2797 5.2915 1.9975 33 1 4.5156 5.1107 1.8444 34 1 5.2948 6.6489 1.4017 35 1 6.1693 7.5909 -0.4343 36 1 7.6891 7.4338 -1.1329 37 1 0.8914 -2.5590 -0.4976 38 1 2.5847 -3.1076 -0.4948 39 1 0.7185 -5.9661 0.8880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611481298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:23 Heat of formation + Delta-G solvation = -18.772296 kcal Electronic energy + Delta-G solvation = -23124.327170 eV Core-core repulsion = 19488.653538 eV Total energy + Delta-G solvation = -3635.673632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33223 -41.38770 -40.26283 -36.61515 -35.90791 -35.31594 -34.82126 -33.09983 -32.61325 -31.13968 -28.50546 -27.83909 -25.90064 -24.92163 -23.14344 -21.48137 -21.29486 -21.07295 -19.52248 -18.80307 -18.58433 -17.64145 -17.32192 -17.10271 -16.83249 -16.40384 -16.01664 -15.79336 -15.74361 -15.46999 -14.68447 -14.59511 -14.34866 -13.85424 -13.77397 -13.63153 -13.50799 -13.29281 -13.11824 -12.84841 -12.66610 -12.63748 -12.25480 -12.07340 -11.56418 -11.34119 -11.16015 -11.11760 -10.72682 -10.71219 -10.33743 -9.55180 -9.07332 -8.31512 -6.49181 0.99757 1.07552 1.37647 1.39350 1.48387 1.52080 1.66013 2.01478 2.35084 2.36125 2.53655 2.97883 3.08752 3.81520 3.88983 4.03277 4.14525 4.19014 4.46858 4.64024 4.74850 4.75930 4.83502 4.91735 4.99309 5.02896 5.13194 5.21784 5.26237 5.38373 5.55381 5.78795 5.82629 5.87178 5.97985 6.29421 6.35965 6.62679 6.69860 7.11352 7.21761 7.24317 7.36299 8.74461 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.002820 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.979061 B = 9927.478533 C =10091.542878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.295 4.295 4 C 0.291 3.709 5 N -0.637 5.637 6 C 0.719 3.281 7 O -0.591 6.591 8 N -0.716 5.716 9 C 0.141 3.859 10 H 0.121 0.879 11 C -0.156 4.156 12 C 0.520 3.480 13 N -0.824 5.824 14 O -0.582 6.582 15 N -0.362 5.362 16 N -0.344 5.344 17 C 0.275 3.725 18 C -0.551 4.551 19 H 0.049 0.951 20 C 0.022 3.978 21 N -0.919 5.919 22 Si 0.972 3.028 23 H -0.274 1.274 24 H -0.266 1.266 25 H -0.275 1.275 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.171 0.829 30 H 0.420 0.580 31 H 0.412 0.588 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.053 0.947 38 H 0.023 0.977 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 25.207 -0.586 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.325 4.325 4 C 0.036 3.964 5 N -0.288 5.288 6 C 0.418 3.582 7 O -0.468 6.468 8 N -0.374 5.374 9 C 0.032 3.968 10 H 0.139 0.861 11 C -0.215 4.215 12 C 0.304 3.696 13 N -0.389 5.389 14 O -0.461 6.461 15 N -0.192 5.192 16 N -0.127 5.127 17 C 0.156 3.844 18 C -0.589 4.589 19 H 0.068 0.932 20 C -0.179 4.179 21 N -0.557 5.557 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.191 1.191 25 H -0.201 1.201 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.188 0.812 30 H 0.257 0.743 31 H 0.250 0.750 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.253 0.747 36 H 0.246 0.754 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.286 23.781 -0.835 24.886 hybrid contribution 0.511 -0.191 0.596 0.808 sum 7.797 23.589 -0.239 24.846 Atomic orbital electron populations 1.20468 0.85268 1.04214 1.03976 1.21767 0.96684 0.86403 0.99478 1.21412 0.89628 1.00001 1.21503 1.18953 0.88027 0.88907 1.00534 1.41359 1.07194 1.03855 1.76386 1.15572 0.84937 0.80078 0.77598 1.90831 1.24584 1.73711 1.57713 1.44673 1.07838 1.05707 1.79161 1.20802 0.97236 0.78831 0.99898 0.86139 1.22169 1.03021 1.03472 0.92807 1.20565 0.87618 0.83940 0.77504 1.43550 1.25148 1.05691 1.64507 1.90760 1.41470 1.62951 1.50965 1.77182 1.00131 1.09834 1.32098 1.48767 1.01655 1.07539 1.54700 1.19244 0.94902 0.72470 0.97789 1.21464 1.47308 0.98365 0.91753 0.93249 1.25740 0.93993 0.95894 1.02286 1.70006 1.45198 1.07407 1.33107 0.85295 0.78469 0.78057 0.78563 1.19813 1.19131 1.20076 0.89769 0.87445 0.91368 0.81213 0.74342 0.75019 0.91678 0.92116 0.87472 0.74672 0.75384 0.92918 0.95893 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.11 71.23 0.72 -1.99 16 2 C 0.09 3.70 6.92 41.39 0.29 3.99 16 3 C -0.29 -12.15 9.52 22.11 0.21 -11.94 16 4 C 0.29 12.16 8.11 133.31 1.08 13.24 16 5 N -0.64 -20.45 5.46 -321.23 -1.75 -22.20 16 6 C 0.72 20.94 8.50 179.06 1.52 22.46 16 7 O -0.59 -20.04 13.13 -4.00 -0.05 -20.10 16 8 N -0.72 -15.12 4.96 -461.40 -2.29 -17.41 16 9 C 0.14 2.16 2.98 44.25 0.13 2.29 16 10 H 0.12 1.86 7.58 -2.39 -0.02 1.84 16 11 C -0.16 -1.78 9.38 71.98 0.68 -1.10 16 12 C 0.52 7.57 7.49 87.66 0.66 8.23 16 13 N -0.82 -4.22 8.77 -173.53 -1.52 -5.74 16 14 O -0.58 -13.62 16.67 -3.04 -0.05 -13.67 16 15 N -0.36 -17.45 12.59 -54.43 -0.69 -18.13 16 16 N -0.34 -16.97 3.59 -338.45 -1.22 -18.19 16 17 C 0.27 14.76 5.99 85.63 0.51 15.27 16 18 C -0.55 -31.22 9.39 25.60 0.24 -30.98 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 20 C 0.02 1.20 5.46 84.66 0.46 1.66 16 21 N -0.92 -52.32 13.29 21.45 0.28 -52.03 16 22 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 27 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.07 2.33 7.07 -2.39 -0.02 2.32 16 29 H 0.17 6.66 5.91 -2.91 -0.02 6.65 16 30 H 0.42 11.22 8.84 -92.71 -0.82 10.40 16 31 H 0.41 8.02 7.80 -92.71 -0.72 7.29 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.42 7.56 -2.38 -0.02 0.40 16 35 H 0.42 -0.54 8.25 -92.71 -0.76 -1.30 16 36 H 0.41 1.44 8.93 -92.71 -0.83 0.61 16 37 H 0.05 2.79 7.04 -2.39 -0.02 2.77 16 38 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -77.43 338.97 -0.75 -78.17 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -1.99 Total: 22.73 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.50 Total: 21.13 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -7.18 Total: -133.71 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.10 Total: -33.77 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -77.43 -0.75 -78.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.402 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds