Wall clock time and date at job start Tue Mar 31 2020 08:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47324 * 90.00474 * 9 7 5 11 11 H 1.48504 * 109.46894 * 210.00251 * 9 7 5 12 12 H 1.48498 * 109.47557 * 330.00047 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 O 1.42902 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.35899 * 116.99732 * 180.02562 * 18 17 16 20 20 C 1.38770 * 120.04152 * 359.72009 * 19 18 17 21 21 C 1.38137 * 119.99129 * 179.74864 * 20 19 18 22 22 C 1.38252 * 120.07751 * 0.52852 * 21 20 19 23 23 C 1.38477 * 120.08901 * 359.75065 * 22 21 20 24 24 F 1.35099 * 119.99720 * 179.97438 * 23 22 21 25 25 C 1.38386 * 120.00158 * 359.97438 * 23 22 21 26 26 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 27 27 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 28 28 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 30 30 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 31 31 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 33 33 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 34 34 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 35 35 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 36 36 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 37 37 H 1.07994 * 120.00580 * 0.02562 * 20 19 18 38 38 H 1.07992 * 119.96254 * 180.27886 * 21 20 19 39 39 H 1.08003 * 119.95731 * 179.76403 * 22 21 20 40 40 H 1.07998 * 120.04060 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5539 -0.3518 -0.7598 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 8 -1.7676 4.5174 3.7482 19 6 -3.0110 5.0635 3.7995 20 6 -3.8455 4.9962 2.6927 21 6 -5.1111 5.5470 2.7477 22 6 -5.5439 6.1752 3.9007 23 6 -4.7118 6.2493 5.0051 24 9 -5.1364 6.8641 6.1307 25 6 -3.4453 5.6937 4.9558 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8292 -0.0604 -2.9502 32 1 2.2718 2.1233 1.9978 33 1 0.0680 2.6060 3.4684 34 1 0.7223 4.1501 2.8717 35 1 -1.4211 4.6108 1.7132 36 1 -2.0755 3.0668 2.3099 37 1 -3.5072 4.5093 1.7901 38 1 -5.7618 5.4904 1.8877 39 1 -6.5324 6.6085 3.9403 40 1 -2.7959 5.7508 5.8169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:55 Heat of formation + Delta-G solvation = -108.859750 kcal Electronic energy + Delta-G solvation = -22794.480818 eV Core-core repulsion = 19102.687988 eV Total energy + Delta-G solvation = -3691.792830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.16735 -40.33862 -39.13945 -37.45439 -35.19542 -32.57099 -32.14005 -31.09045 -30.56916 -29.69628 -27.10451 -24.70537 -23.19449 -22.94904 -21.92981 -20.19495 -19.40930 -18.83649 -17.12135 -16.82258 -16.48419 -16.42993 -16.16162 -15.79804 -15.57663 -15.19879 -14.73505 -14.51005 -14.22454 -13.99629 -13.30388 -13.02647 -12.94622 -12.71538 -12.31687 -12.19449 -11.83409 -11.75938 -11.45405 -11.29788 -11.12310 -11.02701 -10.86698 -10.80725 -10.36767 -10.23048 -9.69398 -9.16070 -9.15080 -9.08272 -8.55454 -8.53345 -7.91199 -6.17167 -4.26803 0.87017 1.03497 2.75539 3.21025 3.26465 3.28744 3.30660 3.33820 4.00355 4.19939 4.37605 4.48341 4.72574 4.77202 4.84128 4.96486 5.06685 5.11791 5.14468 5.30401 5.62237 5.68101 5.75395 5.76207 5.81189 5.98618 6.08872 6.33622 6.39317 6.46716 6.59762 6.97796 7.12461 7.14339 7.29784 7.36950 7.56074 7.66783 7.84039 8.12613 8.57315 8.71147 9.02797 9.40612 10.88150 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.002493 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.717305 B =11230.584061 C =11608.829500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.506 3.494 15 O -0.552 6.552 16 C -0.143 4.143 17 C 0.076 3.924 18 O -0.314 6.314 19 C 0.167 3.833 20 C -0.217 4.217 21 C -0.050 4.050 22 C -0.197 4.197 23 C 0.135 3.865 24 F -0.137 7.137 25 C -0.194 4.194 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 8.380 11.835 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.290 3.710 15 O -0.432 6.432 16 C -0.183 4.183 17 C 0.001 3.999 18 O -0.227 6.227 19 C 0.121 3.879 20 C -0.236 4.236 21 C -0.068 4.068 22 C -0.216 4.216 23 C 0.116 3.884 24 F -0.115 7.115 25 C -0.213 4.213 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.392 8.251 11.137 19.273 hybrid contribution 1.202 -0.010 0.288 1.236 sum -12.190 8.241 11.425 18.629 Atomic orbital electron populations 1.21836 0.98369 0.98085 1.01134 1.21942 0.92600 0.99793 1.02364 1.18817 0.94275 0.89195 0.80895 0.93228 1.21230 0.90671 1.39139 1.06344 0.92053 1.24890 0.98661 0.94772 0.95360 1.69892 1.35169 1.37535 1.09338 0.86450 0.84795 0.78467 0.77408 1.20525 1.21058 1.19857 1.46480 1.14449 1.55553 1.18711 1.19971 0.83096 0.79493 0.88399 1.90687 1.51459 1.60256 1.40766 1.21544 0.96007 1.02205 0.98594 1.22567 0.96112 0.97256 0.83983 1.85993 1.28549 1.69392 1.38743 1.18604 0.84473 0.91747 0.93116 1.21510 0.95870 1.06836 0.99401 1.20821 0.94937 0.93908 0.97100 1.21037 1.01165 1.06161 0.93238 1.17271 0.92845 0.95356 0.82974 1.91508 1.89979 1.80404 1.49637 1.20243 0.96429 1.05405 0.99272 0.94387 0.93131 0.95818 0.88240 0.94994 0.92520 0.77751 0.88347 0.88270 0.90693 0.90744 0.84156 0.84600 0.84731 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -13.58 5.02 -54.93 -0.28 -13.86 16 14 C 0.51 9.03 6.40 -10.98 -0.07 8.95 16 15 O -0.55 -11.65 13.12 5.55 0.07 -11.58 16 16 C -0.14 -1.84 6.07 -27.88 -0.17 -2.01 16 17 C 0.08 0.95 4.03 37.16 0.15 1.10 16 18 O -0.31 -3.88 10.14 -19.42 -0.20 -4.08 16 19 C 0.17 1.95 6.68 -39.23 -0.26 1.68 16 20 C -0.22 -2.29 9.04 -39.42 -0.36 -2.65 16 21 C -0.05 -0.44 10.04 -39.61 -0.40 -0.84 16 22 C -0.20 -1.79 10.02 -39.49 -0.40 -2.18 16 23 C 0.13 1.41 7.30 -39.44 -0.29 1.12 16 24 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 25 C -0.19 -2.11 9.97 -39.37 -0.39 -2.50 16 26 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.39 6.48 8.54 -40.82 -0.35 6.13 16 33 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.96 7.61 -51.93 -0.40 0.57 16 36 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 37 H 0.14 1.43 6.30 -52.49 -0.33 1.10 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -28.99 337.35 -7.61 -36.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.37 Total: 6.74 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.56 Total: -9.09 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.35 Total: -37.40 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.12 Total: -15.66 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.99 -7.61 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.263 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds