Wall clock time and date at job start Tue Mar 31 2020 08:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47324 * 90.00474 * 9 7 5 11 11 H 1.48504 * 109.46894 * 210.00251 * 9 7 5 12 12 H 1.48498 * 109.47557 * 330.00047 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 O 1.42902 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.35899 * 116.99732 * 180.02562 * 18 17 16 20 20 C 1.38770 * 120.04152 * 359.72009 * 19 18 17 21 21 C 1.38137 * 119.99129 * 179.74864 * 20 19 18 22 22 C 1.38252 * 120.07751 * 0.52852 * 21 20 19 23 23 C 1.38477 * 120.08901 * 359.75065 * 22 21 20 24 24 F 1.35099 * 119.99720 * 179.97438 * 23 22 21 25 25 C 1.38386 * 120.00158 * 359.97438 * 23 22 21 26 26 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 27 27 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 28 28 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 30 30 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 31 31 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 33 33 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 34 34 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 35 35 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 36 36 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 37 37 H 1.07994 * 120.00580 * 0.02562 * 20 19 18 38 38 H 1.07992 * 119.96254 * 180.27886 * 21 20 19 39 39 H 1.08003 * 119.95731 * 179.76403 * 22 21 20 40 40 H 1.07998 * 120.04060 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5539 -0.3518 -0.7598 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 8 -1.7676 4.5174 3.7482 19 6 -3.0110 5.0635 3.7995 20 6 -3.8455 4.9962 2.6927 21 6 -5.1111 5.5470 2.7477 22 6 -5.5439 6.1752 3.9007 23 6 -4.7118 6.2493 5.0051 24 9 -5.1364 6.8641 6.1307 25 6 -3.4453 5.6937 4.9558 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8292 -0.0604 -2.9502 32 1 2.2718 2.1233 1.9978 33 1 0.0680 2.6060 3.4684 34 1 0.7223 4.1501 2.8717 35 1 -1.4211 4.6108 1.7132 36 1 -2.0755 3.0668 2.3099 37 1 -3.5072 4.5093 1.7901 38 1 -5.7618 5.4904 1.8877 39 1 -6.5324 6.6085 3.9403 40 1 -2.7959 5.7508 5.8169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:54 Heat of formation + Delta-G solvation = -125.707103 kcal Electronic energy + Delta-G solvation = -22795.211374 eV Core-core repulsion = 19102.687988 eV Total energy + Delta-G solvation = -3692.523386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97257 -41.26740 -40.57597 -38.32546 -36.95787 -34.30756 -33.47264 -32.48904 -31.57841 -30.56522 -28.94090 -25.93543 -24.74238 -23.91148 -22.91649 -21.79665 -21.04658 -19.75599 -18.74902 -17.72944 -17.51032 -17.43244 -17.20359 -17.05540 -16.68957 -16.64996 -16.12445 -15.93365 -15.37505 -14.78141 -14.69674 -14.58626 -14.32004 -13.82401 -13.61019 -13.38346 -13.18583 -13.13743 -12.88537 -12.72570 -12.64862 -12.62820 -12.16410 -12.04669 -11.96095 -11.74989 -11.56845 -11.03778 -10.70526 -10.50421 -9.93507 -9.61686 -9.34987 -8.15676 -6.32474 0.08443 0.25981 1.45207 1.45971 1.55855 1.77112 1.84154 2.39630 2.56135 2.83024 3.14186 3.34462 3.64852 3.82797 3.96647 3.96929 4.05106 4.16262 4.24067 4.39323 4.49873 4.51691 4.59313 4.75754 4.77130 4.80482 4.97901 5.06264 5.08773 5.21031 5.28339 5.33828 5.45320 5.57900 5.63817 5.69303 5.81531 5.93586 6.18801 6.25596 6.76196 6.98786 7.34710 7.58526 8.89486 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.002493 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.717305 B =11230.584061 C =11608.829500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.704 5.704 14 C 0.504 3.496 15 O -0.587 6.587 16 C -0.128 4.128 17 C 0.082 3.918 18 O -0.318 6.318 19 C 0.146 3.854 20 C -0.225 4.225 21 C -0.047 4.047 22 C -0.191 4.191 23 C 0.123 3.877 24 F -0.140 7.140 25 C -0.201 4.201 26 H 0.047 0.953 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 8.921 13.386 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.469 6.469 16 C -0.168 4.168 17 C 0.006 3.994 18 O -0.232 6.232 19 C 0.100 3.900 20 C -0.244 4.244 21 C -0.065 4.065 22 C -0.209 4.209 23 C 0.104 3.896 24 F -0.119 7.119 25 C -0.220 4.220 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.578 8.811 12.735 20.595 hybrid contribution 1.159 -0.126 -0.191 1.181 sum -12.419 8.684 12.544 19.672 Atomic orbital electron populations 1.21677 0.96830 0.99146 1.00401 1.21792 0.93897 0.99191 1.01251 1.18369 0.93522 0.89204 0.81508 0.98155 1.21601 0.91595 1.38772 1.06599 0.91026 1.25747 1.03120 0.94491 0.95120 1.70045 1.36970 1.38434 1.09871 0.85408 0.79394 0.78824 0.77081 1.19789 1.21396 1.18938 1.46234 1.15599 1.55788 1.17657 1.20752 0.81938 0.78565 0.89667 1.90677 1.52311 1.61299 1.42608 1.21411 0.96494 1.03008 0.95886 1.22406 0.95857 0.96988 0.84100 1.85947 1.29204 1.69733 1.38274 1.18775 0.84505 0.92809 0.93883 1.21654 0.96583 1.07086 0.99096 1.21150 0.94546 0.92818 0.97963 1.21351 1.01874 1.05191 0.92535 1.17444 0.93058 0.95728 0.83379 1.91498 1.89973 1.80505 1.49914 1.20351 0.96897 1.05449 0.99332 0.93435 0.95459 0.93763 0.91190 0.94075 0.92655 0.75948 0.85858 0.86108 0.91411 0.91214 0.84258 0.81866 0.82384 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.51 71.98 0.61 -4.67 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.60 2.24 44.25 0.10 13.70 16 4 H 0.00 0.03 7.58 -2.38 -0.02 0.01 16 5 C -0.55 -28.03 8.73 25.60 0.22 -27.81 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.81 5.29 84.66 0.45 1.25 16 8 N -0.91 -51.37 11.29 21.45 0.24 -51.13 16 9 Si 0.97 41.26 29.54 68.60 2.03 43.29 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.70 -26.70 5.02 -446.08 -2.24 -28.94 16 14 C 0.50 17.61 6.40 87.66 0.56 18.17 16 15 O -0.59 -25.08 13.12 -3.04 -0.04 -25.12 16 16 C -0.13 -3.03 6.07 29.85 0.18 -2.85 16 17 C 0.08 1.97 4.03 71.98 0.29 2.26 16 18 O -0.32 -7.49 10.14 -92.41 -0.94 -8.42 16 19 C 0.15 3.27 6.68 22.50 0.15 3.42 16 20 C -0.23 -4.50 9.04 22.37 0.20 -4.30 16 21 C -0.05 -0.73 10.04 22.25 0.22 -0.51 16 22 C -0.19 -3.03 10.02 22.33 0.22 -2.81 16 23 C 0.12 2.40 7.30 22.36 0.16 2.56 16 24 F -0.14 -2.84 17.27 44.97 0.78 -2.06 16 25 C -0.20 -4.18 9.97 22.41 0.22 -3.96 16 26 H 0.05 1.92 5.64 -2.39 -0.01 1.90 16 27 H 0.03 1.26 7.85 -2.39 -0.02 1.24 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 3.77 5.95 -2.38 -0.01 3.75 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.41 12.80 8.54 -92.71 -0.79 12.01 16 33 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 1.71 7.61 -2.39 -0.02 1.70 16 36 H 0.07 1.73 7.63 -2.39 -0.02 1.71 16 37 H 0.14 2.76 6.30 -2.91 -0.02 2.74 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.65 337.35 3.87 -59.79 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.27 Total: 23.78 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 3.77 Total: -11.18 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -2.00 Total: -80.07 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.98 Total: -33.54 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -63.65 3.87 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.921 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds