Wall clock time and date at job start Tue Mar 31 2020 08:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 O 1.42898 * 109.47180 * 179.97438 * 17 16 14 19 19 C 1.35902 * 116.99909 * 179.97438 * 18 17 16 20 20 C 1.38772 * 120.04148 * 359.72803 * 19 18 17 21 21 C 1.38139 * 119.99227 * 179.74299 * 20 19 18 22 22 C 1.38249 * 120.07586 * 0.52905 * 21 20 19 23 23 C 1.38472 * 120.09039 * 359.74761 * 22 21 20 24 24 F 1.35102 * 120.00015 * 180.02562 * 23 22 21 25 25 C 1.38388 * 120.00512 * 359.97097 * 23 22 21 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 29 29 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 30 30 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 31 31 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 36 36 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 37 37 H 1.07997 * 120.00485 * 359.97438 * 20 19 18 38 38 H 1.07995 * 119.96029 * 180.27365 * 21 20 19 39 39 H 1.08003 * 119.95094 * 179.76436 * 22 21 20 40 40 H 1.07997 * 120.04165 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 8 -1.7671 4.5186 -3.7477 19 6 -3.0104 5.0649 -3.7988 20 6 -3.8495 4.9868 -2.6963 21 6 -5.1111 5.5471 -2.7476 22 6 -5.5434 6.1763 -3.9002 23 6 -4.7110 6.2511 -5.0042 24 9 -5.1351 6.8669 -6.1295 25 6 -3.4442 5.6961 -4.9548 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8771 0.4810 2.1123 32 1 2.2719 2.1232 -1.9977 33 1 0.7225 4.1501 -2.8716 34 1 0.0680 2.6061 -3.4682 35 1 -2.0754 3.0670 -2.3098 36 1 -1.4210 4.6110 -1.7131 37 1 -3.5148 4.4913 -1.7969 38 1 -5.7620 5.4899 -1.8877 39 1 -6.5316 6.6103 -3.9393 40 1 -2.7944 5.7545 -5.8154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:58 Heat of formation + Delta-G solvation = -100.507250 kcal Electronic energy + Delta-G solvation = -22887.037572 eV Core-core repulsion = 19195.606933 eV Total energy + Delta-G solvation = -3691.430639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.19934 -40.40081 -39.34878 -37.51965 -35.48733 -32.64756 -32.25106 -31.46206 -30.75163 -29.76926 -27.61452 -24.81380 -23.20357 -22.72651 -22.05346 -20.59517 -19.67487 -18.90465 -17.29770 -16.87021 -16.55971 -16.48252 -16.29032 -15.86725 -15.70781 -15.59523 -14.91243 -14.52332 -14.26687 -14.04241 -13.55222 -13.19659 -13.04185 -12.90124 -12.43067 -12.36840 -12.08153 -11.90539 -11.86291 -11.68129 -11.18211 -11.14416 -10.95819 -10.87778 -10.68034 -9.98565 -9.64862 -9.31114 -9.24062 -9.19173 -8.80992 -8.58126 -8.16723 -6.25962 -4.28990 0.82839 0.99211 2.68316 3.08567 3.19356 3.29521 3.31574 3.35487 3.90832 4.14668 4.26681 4.43030 4.68504 4.70669 4.76962 4.88071 5.01566 5.07171 5.07485 5.19855 5.48450 5.62945 5.66935 5.69365 5.77225 5.89755 5.93830 5.96243 6.04129 6.11244 6.42198 6.58730 6.63204 6.77029 6.87696 7.08357 7.18226 7.22390 7.44441 8.06363 8.44172 8.69085 8.82224 9.34394 10.86050 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038764 B = 0.002618 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.146751 B =10691.566308 C =11054.015698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.508 3.492 15 O -0.553 6.553 16 C -0.143 4.143 17 C 0.076 3.924 18 O -0.313 6.313 19 C 0.167 3.833 20 C -0.218 4.218 21 C -0.050 4.050 22 C -0.197 4.197 23 C 0.135 3.865 24 F -0.136 7.136 25 C -0.193 4.193 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 7.432 -10.645 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.344 5.344 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.183 4.183 17 C 0.001 3.999 18 O -0.226 6.226 19 C 0.120 3.880 20 C -0.237 4.237 21 C -0.068 4.068 22 C -0.216 4.216 23 C 0.116 3.884 24 F -0.115 7.115 25 C -0.213 4.213 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.412 7.354 -10.034 22.221 hybrid contribution -0.133 -0.463 0.352 0.596 sum -18.545 6.891 -9.683 22.026 Atomic orbital electron populations 1.21874 0.96962 0.99079 1.02160 1.22294 0.94339 0.99947 1.01208 1.19173 0.95697 0.88507 0.82737 0.93241 1.21043 0.88566 1.39960 1.07912 0.90153 1.24840 0.94876 0.95126 0.97682 1.69869 1.08691 1.44370 1.29844 0.86898 0.80930 0.79958 0.80918 1.20223 1.22138 1.18475 1.46146 1.14681 1.55459 1.18140 1.20032 0.82833 0.79247 0.88575 1.90685 1.51550 1.60271 1.40804 1.21514 0.96173 1.02368 0.98233 1.22554 0.95990 0.97276 0.84122 1.85995 1.28611 1.69368 1.38642 1.18597 0.84408 0.91806 0.93154 1.21497 0.95903 1.06766 0.99487 1.20819 0.94979 0.93893 0.97094 1.21040 1.01165 1.06151 0.93203 1.17273 0.92828 0.95296 0.82995 1.91512 1.89989 1.80334 1.49647 1.20251 0.96412 1.05377 0.99248 0.93024 0.94935 0.92866 0.92239 0.92718 0.92229 0.76957 0.87965 0.88110 0.90758 0.90674 0.84210 0.84611 0.84707 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.51 37.16 0.32 -2.42 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.47 1.83 -69.08 -0.13 5.34 16 4 H 0.05 1.24 6.64 -51.93 -0.34 0.90 16 5 C -0.54 -14.05 9.31 -34.44 -0.32 -14.37 16 6 H 0.08 2.21 7.98 -52.48 -0.42 1.79 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 9 Si 0.88 21.25 24.41 -169.99 -4.15 17.10 16 10 H -0.28 -6.43 6.83 56.52 0.39 -6.05 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.81 16 13 N -0.70 -12.68 5.02 -54.93 -0.28 -12.96 16 14 C 0.51 8.43 6.40 -10.98 -0.07 8.36 16 15 O -0.55 -10.81 13.12 5.55 0.07 -10.73 16 16 C -0.14 -1.70 6.07 -27.88 -0.17 -1.87 16 17 C 0.08 0.89 4.03 37.16 0.15 1.04 16 18 O -0.31 -3.68 10.14 -19.43 -0.20 -3.88 16 19 C 0.17 1.85 6.69 -39.22 -0.26 1.59 16 20 C -0.22 -2.17 9.04 -39.42 -0.36 -2.53 16 21 C -0.05 -0.42 10.04 -39.61 -0.40 -0.82 16 22 C -0.20 -1.71 10.02 -39.49 -0.40 -2.10 16 23 C 0.14 1.36 7.30 -39.44 -0.29 1.08 16 24 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 25 C -0.19 -2.03 9.97 -39.37 -0.39 -2.42 16 26 H 0.05 0.94 5.64 -51.93 -0.29 0.65 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.24 3.21 -51.93 -0.17 1.07 16 31 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.40 6.33 8.54 -40.82 -0.35 5.98 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 36 H 0.08 0.90 7.63 -51.93 -0.40 0.50 16 37 H 0.14 1.33 6.30 -52.49 -0.33 1.00 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.20 330.58 -6.55 -36.75 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.24 Total: 5.45 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.55 Total: -10.16 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.50 Total: -38.13 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.12 Total: -14.61 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.15 Total: 17.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.20 -6.55 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.757 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds