Wall clock time and date at job start Tue Mar 31 2020 08:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 O 1.42898 * 109.47180 * 179.97438 * 17 16 14 19 19 C 1.35902 * 116.99909 * 179.97438 * 18 17 16 20 20 C 1.38772 * 120.04148 * 359.72803 * 19 18 17 21 21 C 1.38139 * 119.99227 * 179.74299 * 20 19 18 22 22 C 1.38249 * 120.07586 * 0.52905 * 21 20 19 23 23 C 1.38472 * 120.09039 * 359.74761 * 22 21 20 24 24 F 1.35102 * 120.00015 * 180.02562 * 23 22 21 25 25 C 1.38388 * 120.00512 * 359.97097 * 23 22 21 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 29 29 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 30 30 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 31 31 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 36 36 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 37 37 H 1.07997 * 120.00485 * 359.97438 * 20 19 18 38 38 H 1.07995 * 119.96029 * 180.27365 * 21 20 19 39 39 H 1.08003 * 119.95094 * 179.76436 * 22 21 20 40 40 H 1.07997 * 120.04165 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 8 -1.7671 4.5186 -3.7477 19 6 -3.0104 5.0649 -3.7988 20 6 -3.8495 4.9868 -2.6963 21 6 -5.1111 5.5471 -2.7476 22 6 -5.5434 6.1763 -3.9002 23 6 -4.7110 6.2511 -5.0042 24 9 -5.1351 6.8669 -6.1295 25 6 -3.4442 5.6961 -4.9548 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8771 0.4810 2.1123 32 1 2.2719 2.1232 -1.9977 33 1 0.7225 4.1501 -2.8716 34 1 0.0680 2.6061 -3.4682 35 1 -2.0754 3.0670 -2.3098 36 1 -1.4210 4.6110 -1.7131 37 1 -3.5148 4.4913 -1.7969 38 1 -5.7620 5.4899 -1.8877 39 1 -6.5316 6.6103 -3.9393 40 1 -2.7944 5.7545 -5.8154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:57 Heat of formation + Delta-G solvation = -119.786098 kcal Electronic energy + Delta-G solvation = -22887.873566 eV Core-core repulsion = 19195.606933 eV Total energy + Delta-G solvation = -3692.266632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.97260 -41.29232 -40.67141 -38.33756 -37.13669 -34.40197 -33.69236 -32.70526 -31.59703 -30.57528 -29.40213 -25.91778 -24.47635 -23.91693 -23.02348 -22.05200 -21.16578 -19.78267 -18.96894 -17.75856 -17.64320 -17.52780 -17.34513 -17.10332 -16.75788 -16.65556 -16.19114 -15.93855 -15.39611 -15.12065 -14.75263 -14.66490 -14.41804 -13.91908 -13.84683 -13.62330 -13.50885 -13.15871 -12.95546 -12.76343 -12.70210 -12.64263 -12.37423 -11.96431 -11.84634 -11.74750 -11.37634 -11.22792 -10.86557 -10.72429 -9.93375 -9.75946 -9.34785 -8.37883 -6.43386 0.08635 0.26144 1.27428 1.35622 1.44834 1.74840 1.76578 2.26052 2.56349 2.69521 2.98246 3.34031 3.63941 3.81462 3.96852 3.96960 4.02902 4.12679 4.24315 4.25821 4.34273 4.39272 4.44091 4.54023 4.75681 4.79004 4.86445 4.98128 5.03591 5.06600 5.14059 5.21064 5.24211 5.33728 5.42099 5.53768 5.67072 5.69427 6.14041 6.26281 6.59574 6.88330 7.19749 7.45832 8.77321 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038764 B = 0.002618 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.146751 B =10691.566308 C =11054.015698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C 0.249 3.751 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.937 3.063 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.258 1.258 13 N -0.699 5.699 14 C 0.509 3.491 15 O -0.582 6.582 16 C -0.130 4.130 17 C 0.081 3.919 18 O -0.319 6.319 19 C 0.147 3.853 20 C -0.224 4.224 21 C -0.047 4.047 22 C -0.191 4.191 23 C 0.122 3.878 24 F -0.141 7.141 25 C -0.202 4.202 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.269 0.731 32 H 0.408 0.592 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.469 7.287 -11.178 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.144 3.856 4 H 0.042 0.958 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.172 4.172 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.182 1.182 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.463 6.463 16 C -0.169 4.169 17 C 0.005 3.995 18 O -0.233 6.233 19 C 0.101 3.899 20 C -0.243 4.243 21 C -0.065 4.065 22 C -0.210 4.210 23 C 0.103 3.897 24 F -0.120 7.120 25 C -0.221 4.221 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.695 7.219 -10.605 24.349 hybrid contribution 0.536 -0.323 0.448 0.770 sum -20.159 6.896 -10.157 23.603 Atomic orbital electron populations 1.21766 0.95019 1.00565 1.01741 1.22216 0.96013 0.98480 1.01005 1.18783 0.93050 0.89710 0.84032 0.95768 1.21321 0.90529 1.38413 1.06863 0.92539 1.25570 0.95716 0.95964 0.99943 1.69985 1.10335 1.46217 1.30874 0.86025 0.79366 0.79918 0.78242 1.18674 1.22326 1.18215 1.45982 1.15866 1.55900 1.17082 1.20709 0.81614 0.78272 0.89758 1.90675 1.52185 1.61090 1.42342 1.21407 0.96607 1.03073 0.95861 1.22429 0.95762 0.97130 0.84133 1.85952 1.29214 1.69712 1.38386 1.18764 0.84478 0.92789 0.93882 1.21659 0.96496 1.06922 0.99218 1.21157 0.94653 0.92766 0.97896 1.21352 1.01837 1.05273 0.92557 1.17459 0.93086 0.95738 0.83401 1.91499 1.90000 1.80471 1.49992 1.20357 0.96864 1.05548 0.99371 0.92361 0.92458 0.94364 0.91309 0.94005 0.92139 0.75647 0.86248 0.85690 0.90845 0.91284 0.84003 0.81815 0.82459 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.51 71.98 0.61 -4.19 16 2 C -0.14 -5.68 5.11 30.60 0.16 -5.53 16 3 C 0.25 11.14 1.83 44.24 0.08 11.22 16 4 H 0.02 1.22 6.64 -2.38 -0.02 1.21 16 5 C -0.53 -28.18 9.31 25.60 0.24 -27.95 16 6 H 0.06 3.18 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.53 5.45 84.65 0.46 2.00 16 8 N -0.94 -55.47 13.96 21.45 0.30 -55.17 16 9 Si 0.94 43.90 24.41 68.60 1.67 45.57 16 10 H -0.26 -11.53 6.83 99.48 0.68 -10.85 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.26 -11.86 6.53 99.48 0.65 -11.21 16 13 N -0.70 -24.71 5.02 -446.09 -2.24 -26.95 16 14 C 0.51 16.09 6.40 87.66 0.56 16.65 16 15 O -0.58 -22.06 13.12 -3.04 -0.04 -22.10 16 16 C -0.13 -2.79 6.07 29.85 0.18 -2.61 16 17 C 0.08 1.76 4.03 71.98 0.29 2.05 16 18 O -0.32 -7.05 10.14 -92.44 -0.94 -7.98 16 19 C 0.15 3.09 6.69 22.50 0.15 3.24 16 20 C -0.22 -4.11 9.04 22.37 0.20 -3.91 16 21 C -0.05 -0.67 10.04 22.25 0.22 -0.45 16 22 C -0.19 -2.88 10.02 22.33 0.22 -2.65 16 23 C 0.12 2.30 7.30 22.36 0.16 2.46 16 24 F -0.14 -2.79 17.27 44.97 0.78 -2.01 16 25 C -0.20 -4.05 9.97 22.41 0.22 -3.82 16 26 H 0.06 1.99 5.64 -2.39 -0.01 1.98 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.04 1.47 7.85 -2.38 -0.02 1.45 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.04 1.82 3.21 -2.39 -0.01 1.81 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.41 12.54 8.54 -92.71 -0.79 11.75 16 33 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.60 7.60 -2.38 -0.02 1.59 16 36 H 0.07 1.58 7.63 -2.39 -0.02 1.56 16 37 H 0.14 2.49 6.30 -2.91 -0.02 2.47 16 38 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -65.21 330.58 3.49 -61.72 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.19 Total: 20.41 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 3.77 Total: -13.48 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.94 Total: -82.12 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.98 Total: -30.08 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.67 Total: 45.57 kcal Total: -65.21 3.49 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.067 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds