Wall clock time and date at job start Tue Mar 31 2020 07:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53009 * 109.46773 * 120.00110 * 2 1 3 5 5 N 1.46493 * 109.47290 * 64.99591 * 4 2 1 6 6 C 1.46496 * 120.00297 * 270.00336 * 5 4 2 7 7 C 1.50709 * 109.47001 * 270.00103 * 6 5 4 8 8 H 1.08001 * 119.99331 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00246 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00393 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46828 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47318 * 119.99391 * 11 9 7 14 14 H 1.48494 * 109.47581 * 239.99811 * 11 9 7 15 15 C 1.34784 * 119.99962 * 90.00051 * 5 4 2 16 16 O 1.21281 * 120.00093 * 179.97438 * 15 5 4 17 17 C 1.50696 * 119.99865 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47110 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 15 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.08993 * 109.47628 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47131 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.46706 * 60.00022 * 1 2 3 27 27 H 1.09004 * 109.47106 * 239.99347 * 2 1 3 28 28 H 1.09004 * 109.46893 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46750 * 299.99389 * 3 2 1 30 30 H 1.08997 * 109.47180 * 59.99761 * 3 2 1 31 31 H 1.09000 * 109.46938 * 304.99647 * 4 2 1 32 32 H 1.08999 * 109.46962 * 185.00125 * 4 2 1 33 33 H 1.09000 * 109.47287 * 29.99656 * 6 5 4 34 34 H 1.09002 * 109.47320 * 150.00258 * 6 5 4 35 35 H 0.96994 * 120.00434 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47543 * 59.99570 * 17 15 5 37 37 H 1.09008 * 109.47338 * 300.00084 * 17 15 5 38 38 H 1.09000 * 109.46884 * 60.00335 * 18 17 15 39 39 H 1.09000 * 109.46955 * 299.99651 * 18 17 15 40 40 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 41 41 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 42 42 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6523 -2.1328 1.1907 6 6 0.3744 -2.5658 1.7613 7 6 0.5713 -2.9407 3.2076 8 1 1.5506 -2.8644 3.6566 9 6 -0.4983 -3.3820 3.9573 10 7 -1.6907 -3.4754 3.4103 11 14 -0.2541 -3.8473 5.7498 12 1 1.1708 -3.6551 6.1213 13 1 -1.1096 -2.9867 6.6056 14 1 -0.6289 -5.2705 5.9474 15 6 2.4713 -3.0331 0.6117 16 8 2.1506 -4.2018 0.5636 17 6 3.7861 -2.5878 0.0252 18 6 4.5170 -3.7959 -0.5641 19 6 5.8316 -3.3505 -1.1512 20 6 6.9895 -3.2965 -0.4912 21 6 8.0673 -2.8552 -1.2394 22 6 7.7846 -2.5513 -2.5071 23 16 6.0752 -2.8295 -2.8133 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 3.1301 1.4423 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6053 -0.2618 2.1370 32 1 3.1262 -0.6444 1.2953 33 1 -0.3486 -1.7531 1.6919 34 1 0.0041 -3.4297 1.2093 35 1 -2.4433 -3.7855 3.9377 36 1 4.3990 -2.1385 0.8066 37 1 3.6038 -1.8543 -0.7603 38 1 3.9043 -4.2455 -1.3455 39 1 4.6994 -4.5290 0.2217 40 1 7.0793 -3.5756 0.5482 41 1 9.0618 -2.7646 -0.8281 42 1 8.4973 -2.1930 -3.2352 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701306976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:39 Heat of formation + Delta-G solvation = -24.834624 kcal Electronic energy + Delta-G solvation = -21658.831530 eV Core-core repulsion = 18536.895479 eV Total energy + Delta-G solvation = -3121.936051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.32407 -37.93478 -36.37547 -33.79096 -33.26274 -32.25436 -29.14728 -27.54363 -26.81272 -25.55664 -24.82602 -23.01314 -21.78708 -20.19544 -19.27417 -18.26189 -17.25094 -16.50382 -16.03034 -15.65008 -15.44517 -14.95300 -14.49533 -14.19219 -13.95681 -13.30618 -13.15113 -12.97554 -12.79148 -12.41242 -12.30889 -12.08906 -12.01992 -11.84667 -11.79125 -11.46077 -11.27768 -11.03843 -10.92579 -10.92022 -10.69949 -10.64417 -10.39331 -10.24611 -10.10868 -9.54893 -8.97023 -8.62128 -8.55050 -8.40898 -7.60028 -6.02674 -4.06831 0.92866 1.56745 1.94308 2.67451 3.30207 3.37608 3.40598 3.47034 3.96010 4.45865 4.73955 4.95790 5.06054 5.12007 5.19307 5.25898 5.29541 5.32915 5.37959 5.49951 5.57555 5.69476 5.79252 5.85755 5.87779 5.93250 6.11740 6.13660 6.18507 6.20653 6.23319 6.26579 6.32812 6.46057 6.58424 6.71067 7.12732 7.47154 7.59140 7.94236 8.26800 8.46194 8.92672 9.12744 9.58149 11.05237 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.004037 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.783177 B = 6933.916403 C = 7971.221424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.242 3.758 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.504 3.496 16 O -0.544 6.544 17 C -0.134 4.134 18 C -0.036 4.036 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.130 4.130 22 C -0.224 4.224 23 S 0.091 5.909 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.394 7.653 -10.869 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.123 3.877 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.291 3.709 16 O -0.422 6.422 17 C -0.175 4.175 18 C -0.076 4.076 19 C -0.275 4.275 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.360 4.360 23 S 0.354 5.646 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 14.089 7.141 -12.107 19.902 hybrid contribution 1.071 -0.254 2.256 2.510 sum 15.160 6.888 -9.851 19.347 Atomic orbital electron populations 1.21926 0.94628 1.03066 1.00941 1.21584 0.97082 0.95798 0.98883 1.21779 1.00543 0.96034 1.01753 1.21543 0.99059 0.82401 0.97918 1.48199 1.21775 1.06304 1.56209 1.19399 0.78769 0.96349 0.93224 1.21497 0.95051 1.44182 0.95598 0.92517 1.24921 0.95078 0.95475 0.98631 1.69938 0.99806 1.47174 1.36486 0.86474 0.78129 0.78234 0.84776 1.19845 1.21009 1.20915 1.20283 0.85504 0.86157 0.78955 1.90670 1.75267 1.17477 1.58747 1.21725 0.95511 0.98835 1.01418 1.19924 0.89502 0.97346 1.00779 1.24670 0.99781 1.06663 0.96379 1.20177 0.91573 1.04377 1.01649 1.20166 1.00250 1.02087 0.93586 1.25562 0.98818 1.10739 1.00854 1.84336 1.04486 1.64803 1.10982 0.91270 0.92527 0.93663 0.91618 0.92926 0.92857 0.92510 0.90013 0.91691 0.94179 0.94117 0.92835 0.89282 0.89558 0.90008 0.89030 0.84220 0.84534 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.18 37.16 0.30 -1.95 16 2 C -0.11 -1.56 3.12 -90.62 -0.28 -1.84 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.21 16 4 C 0.12 1.84 4.70 -4.04 -0.02 1.82 16 5 N -0.59 -12.25 2.28 -175.06 -0.40 -12.65 16 6 C 0.24 6.19 4.23 -5.19 -0.02 6.17 16 7 C -0.52 -14.78 9.39 -34.44 -0.32 -15.11 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 11 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.50 10.25 7.67 -10.98 -0.08 10.17 16 16 O -0.54 -13.44 15.56 5.56 0.09 -13.35 16 17 C -0.13 -1.97 4.23 -27.89 -0.12 -2.09 16 18 C -0.04 -0.50 5.00 -27.88 -0.14 -0.64 16 19 C -0.16 -1.92 5.76 -36.00 -0.21 -2.13 16 20 C -0.15 -1.65 10.05 -41.21 -0.41 -2.07 16 21 C -0.13 -1.28 10.18 -41.21 -0.42 -1.70 16 22 C -0.22 -2.13 11.23 29.04 0.33 -1.81 16 23 S 0.09 0.98 23.33 -107.50 -2.51 -1.53 16 24 H 0.07 1.26 5.89 -51.93 -0.31 0.95 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 33 H 0.04 1.03 5.98 -51.93 -0.31 0.72 16 34 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 37 H 0.09 1.13 7.26 -51.92 -0.38 0.75 16 38 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -32.02 356.69 -9.55 -41.57 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.66 Total: 0.21 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.16 Total: -10.75 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.34 Total: -38.40 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.02 -9.55 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.739 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds