Wall clock time and date at job start Tue Mar 31 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53009 * 109.46773 * 120.00110 * 2 1 3 5 5 N 1.46493 * 109.47290 * 64.99591 * 4 2 1 6 6 C 1.46496 * 120.00297 * 270.00336 * 5 4 2 7 7 C 1.50709 * 109.47001 * 270.00103 * 6 5 4 8 8 H 1.08001 * 119.99331 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00246 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00393 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46828 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47318 * 119.99391 * 11 9 7 14 14 H 1.48494 * 109.47581 * 239.99811 * 11 9 7 15 15 C 1.34784 * 119.99962 * 90.00051 * 5 4 2 16 16 O 1.21281 * 120.00093 * 179.97438 * 15 5 4 17 17 C 1.50696 * 119.99865 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47110 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 15 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.08993 * 109.47628 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47131 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.46706 * 60.00022 * 1 2 3 27 27 H 1.09004 * 109.47106 * 239.99347 * 2 1 3 28 28 H 1.09004 * 109.46893 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46750 * 299.99389 * 3 2 1 30 30 H 1.08997 * 109.47180 * 59.99761 * 3 2 1 31 31 H 1.09000 * 109.46938 * 304.99647 * 4 2 1 32 32 H 1.08999 * 109.46962 * 185.00125 * 4 2 1 33 33 H 1.09000 * 109.47287 * 29.99656 * 6 5 4 34 34 H 1.09002 * 109.47320 * 150.00258 * 6 5 4 35 35 H 0.96994 * 120.00434 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47543 * 59.99570 * 17 15 5 37 37 H 1.09008 * 109.47338 * 300.00084 * 17 15 5 38 38 H 1.09000 * 109.46884 * 60.00335 * 18 17 15 39 39 H 1.09000 * 109.46955 * 299.99651 * 18 17 15 40 40 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 41 41 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 42 42 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6523 -2.1328 1.1907 6 6 0.3744 -2.5658 1.7613 7 6 0.5713 -2.9407 3.2076 8 1 1.5506 -2.8644 3.6566 9 6 -0.4983 -3.3820 3.9573 10 7 -1.6907 -3.4754 3.4103 11 14 -0.2541 -3.8473 5.7498 12 1 1.1708 -3.6551 6.1213 13 1 -1.1096 -2.9867 6.6056 14 1 -0.6289 -5.2705 5.9474 15 6 2.4713 -3.0331 0.6117 16 8 2.1506 -4.2018 0.5636 17 6 3.7861 -2.5878 0.0252 18 6 4.5170 -3.7959 -0.5641 19 6 5.8316 -3.3505 -1.1512 20 6 6.9895 -3.2965 -0.4912 21 6 8.0673 -2.8552 -1.2394 22 6 7.7846 -2.5513 -2.5071 23 16 6.0752 -2.8295 -2.8133 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 3.1301 1.4423 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6053 -0.2618 2.1370 32 1 3.1262 -0.6444 1.2953 33 1 -0.3486 -1.7531 1.6919 34 1 0.0041 -3.4297 1.2093 35 1 -2.4433 -3.7855 3.9377 36 1 4.3990 -2.1385 0.8066 37 1 3.6038 -1.8543 -0.7603 38 1 3.9043 -4.2455 -1.3455 39 1 4.6994 -4.5290 0.2217 40 1 7.0793 -3.5756 0.5482 41 1 9.0618 -2.7646 -0.8281 42 1 8.4973 -2.1930 -3.2352 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:38 Heat of formation + Delta-G solvation = -42.202656 kcal Electronic energy + Delta-G solvation = -21659.584664 eV Core-core repulsion = 18536.895479 eV Total energy + Delta-G solvation = -3122.689186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90517 -38.79894 -37.80932 -35.45534 -34.55676 -34.09028 -30.52268 -29.06030 -27.96391 -26.91108 -26.16646 -24.47977 -23.10035 -21.40060 -20.08253 -19.80714 -18.68409 -18.27751 -17.30635 -17.26203 -16.61426 -16.27043 -16.12398 -15.56733 -15.24204 -14.63419 -14.37853 -14.12909 -14.08179 -13.71186 -13.57533 -13.43973 -13.13109 -13.05891 -12.98654 -12.91919 -12.82198 -12.66319 -12.50196 -12.15391 -12.09873 -12.00020 -11.79409 -11.58884 -11.49011 -11.48515 -10.62216 -10.60285 -9.52437 -9.36880 -9.35300 -8.20999 -6.35437 0.11586 0.75117 1.15825 1.35391 1.37870 1.49451 1.85055 1.88351 2.32278 2.47763 3.08168 3.57545 3.92890 3.96721 4.04006 4.10320 4.18817 4.27066 4.31893 4.52923 4.63031 4.70480 4.71141 4.75651 4.84528 4.90733 4.94676 5.05853 5.07215 5.10515 5.14817 5.25087 5.29138 5.31369 5.45196 5.45965 5.51092 5.61548 5.64422 5.89721 6.10173 6.72184 6.82978 7.29761 7.50902 8.85744 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.004037 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.783177 B = 6933.916403 C = 7971.221424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.110 3.890 5 N -0.598 5.598 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.269 1.269 14 H -0.283 1.283 15 C 0.494 3.506 16 O -0.599 6.599 17 C -0.116 4.116 18 C -0.028 4.028 19 C -0.182 4.182 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.212 4.212 23 S 0.083 5.917 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.035 0.965 34 H -0.010 1.010 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.309 9.696 -10.938 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.193 4.193 4 C -0.013 4.013 5 N -0.328 5.328 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.194 1.194 14 H -0.209 1.209 15 C 0.283 3.717 16 O -0.481 6.481 17 C -0.156 4.156 18 C -0.068 4.068 19 C -0.299 4.299 20 C -0.174 4.174 21 C -0.170 4.170 22 C -0.347 4.347 23 S 0.346 5.654 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.008 0.992 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.179 0.821 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 17.026 9.235 -12.187 22.885 hybrid contribution 0.178 -0.893 2.211 2.391 sum 17.204 8.343 -9.975 21.566 Atomic orbital electron populations 1.21891 0.96250 1.00606 1.01694 1.21534 0.95621 0.97837 0.97645 1.21723 1.01758 0.93330 1.02513 1.21857 1.01047 0.79555 0.98792 1.48203 1.20180 1.08630 1.55739 1.18829 0.81233 0.94224 0.91820 1.21790 0.94917 1.44534 0.96814 0.92999 1.25832 0.94725 0.95214 1.03360 1.70059 1.00660 1.47775 1.38331 0.85399 0.78513 0.77868 0.79223 1.19102 1.19439 1.20871 1.21333 0.86964 0.85301 0.78066 1.90635 1.76731 1.19950 1.60789 1.21660 0.92022 0.99587 1.02293 1.19704 0.90538 0.96673 0.99864 1.24403 0.99035 1.09014 0.97461 1.20423 0.91623 1.03198 1.02125 1.20411 1.00934 1.02013 0.93609 1.25943 0.98135 1.09314 1.01305 1.84370 1.06091 1.64853 1.10070 0.95267 0.93198 0.91475 0.91149 0.90920 0.91485 0.92432 0.91181 0.88351 0.94721 0.99162 0.92509 0.87029 0.87173 0.91644 0.90689 0.83649 0.82072 0.79522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.18 71.98 0.59 -3.92 16 2 C -0.11 -2.76 3.12 -10.79 -0.03 -2.79 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C 0.11 3.41 4.70 86.38 0.41 3.82 16 5 N -0.60 -25.38 2.28 -826.14 -1.88 -27.27 16 6 C 0.26 14.13 4.23 85.64 0.36 14.49 16 7 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.01 0.43 5.46 84.65 0.46 0.90 16 10 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 11 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 C 0.49 20.67 7.67 87.65 0.67 21.34 16 16 O -0.60 -31.43 15.56 -3.03 -0.05 -31.47 16 17 C -0.12 -3.27 4.23 29.85 0.13 -3.15 16 18 C -0.03 -0.79 5.00 29.85 0.15 -0.64 16 19 C -0.18 -4.17 5.76 24.59 0.14 -4.03 16 20 C -0.14 -2.87 10.05 21.22 0.21 -2.66 16 21 C -0.14 -2.26 10.18 21.22 0.22 -2.05 16 22 C -0.21 -3.29 11.23 66.72 0.75 -2.54 16 23 S 0.08 1.63 23.33 -56.49 -1.32 0.31 16 24 H 0.03 1.11 5.89 -2.39 -0.01 1.09 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.78 7.30 -2.38 -0.02 1.76 16 28 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.10 2.40 6.44 -2.39 -0.02 2.38 16 33 H 0.03 1.90 5.98 -2.39 -0.01 1.88 16 34 H -0.01 -0.62 7.42 -2.39 -0.02 -0.64 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.11 2.69 7.40 -2.39 -0.02 2.68 16 37 H 0.11 2.62 7.26 -2.38 -0.02 2.61 16 38 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 39 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -73.67 356.69 5.01 -68.67 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.99 Total: 13.18 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.96 Total: -14.42 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.60 Total: -83.76 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.05 Total: -31.47 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -73.67 5.01 -68.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.465 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds