Wall clock time and date at job start Tue Mar 31 2020 07:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47526 * 2 1 4 4 C 1.53007 * 109.47163 * 120.00035 * 2 1 3 5 5 N 1.46495 * 109.47317 * 174.10856 * 4 2 1 6 6 C 1.46503 * 119.99581 * 276.68493 * 5 4 2 7 7 C 1.50703 * 109.47039 * 269.99792 * 6 5 4 8 8 H 1.07997 * 119.99720 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99940 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99893 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99773 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47210 * 60.00036 * 11 9 7 13 13 H 1.48502 * 109.46952 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47500 * 299.99952 * 11 9 7 15 15 C 1.34773 * 120.00382 * 96.68372 * 5 4 2 16 16 O 1.21276 * 120.00246 * 185.40707 * 15 5 4 17 17 C 1.50707 * 119.99589 * 5.40213 * 15 5 4 18 18 C 1.53006 * 109.46751 * 174.69531 * 17 15 5 19 19 C 1.50695 * 109.46729 * 180.02562 * 18 17 15 20 20 C 1.38428 * 122.54063 * 270.00038 * 19 18 17 21 21 C 1.33390 * 114.92144 * 180.02562 * 20 19 18 22 22 S 1.75880 * 109.59340 * 359.75774 * 21 20 19 23 23 C 1.33392 * 122.54231 * 90.02630 * 19 18 17 24 24 H 1.09002 * 109.46950 * 300.00617 * 1 2 3 25 25 H 1.09001 * 109.47026 * 60.00163 * 1 2 3 26 26 H 1.08993 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46950 * 239.99383 * 2 1 3 28 28 H 1.08992 * 109.47163 * 64.70242 * 3 2 1 29 29 H 1.08997 * 109.47085 * 184.71083 * 3 2 1 30 30 H 1.09006 * 109.46517 * 304.70376 * 3 2 1 31 31 H 1.08999 * 109.47092 * 54.10553 * 4 2 1 32 32 H 1.09002 * 109.46641 * 294.10771 * 4 2 1 33 33 H 1.08995 * 109.47328 * 29.99941 * 6 5 4 34 34 H 1.09003 * 109.47139 * 150.00165 * 6 5 4 35 35 H 0.97003 * 119.99995 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.46807 * 54.70198 * 17 15 5 37 37 H 1.08993 * 109.47160 * 294.69455 * 17 15 5 38 38 H 1.08996 * 109.46987 * 60.00331 * 18 17 15 39 39 H 1.09002 * 109.46792 * 300.00267 * 18 17 15 40 40 H 1.07998 * 122.53387 * 0.04247 * 20 19 18 41 41 H 1.07999 * 125.19947 * 180.02562 * 21 20 19 42 42 H 1.08007 * 125.19727 * 359.95269 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4981 -0.8453 1.1805 6 6 4.1049 -1.9450 0.4264 7 6 4.2993 -3.1307 1.3360 8 1 4.0004 -3.0712 2.3720 9 6 4.8588 -4.2915 0.8455 10 7 5.2224 -4.3641 -0.4163 11 14 5.0991 -5.7614 1.9728 12 1 3.7835 -6.1955 2.5075 13 1 5.7143 -6.8761 1.2084 14 1 5.9900 -5.3816 3.0985 15 6 4.2813 0.0522 1.8110 16 8 5.4855 0.0081 1.6742 17 6 3.6605 1.1107 2.6859 18 6 4.7648 1.9094 3.3815 19 6 4.1440 2.9674 4.2569 20 6 3.8571 4.2408 3.7961 21 6 3.3100 5.0555 4.6996 22 16 3.1246 4.2030 6.2267 23 6 3.8298 2.7480 5.5346 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.7473 1.9314 0.9290 29 1 3.1268 1.4435 -0.0844 30 1 1.6096 1.9800 -0.8449 31 1 1.5931 -1.7139 1.3036 32 1 1.7654 -0.1501 2.1361 33 1 3.4504 -2.2240 -0.3993 34 1 5.0704 -1.6266 0.0331 35 1 5.6157 -5.1808 -0.7615 36 1 3.0274 0.6367 3.4360 37 1 3.0582 1.7813 2.0731 38 1 5.3979 2.3833 2.6315 39 1 5.3672 1.2387 3.9943 40 1 4.0606 4.5510 2.7818 41 1 3.0208 6.0803 4.5195 42 1 3.9811 1.8177 6.0620 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751200243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:41 Heat of formation + Delta-G solvation = -23.019096 kcal Electronic energy + Delta-G solvation = -21803.085267 eV Core-core repulsion = 18681.227943 eV Total energy + Delta-G solvation = -3121.857324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.45011 -38.20428 -36.27277 -33.74029 -32.58240 -32.19575 -29.31492 -27.59374 -27.04252 -25.76974 -24.89549 -23.00370 -21.79931 -20.18533 -18.74691 -18.11008 -17.66265 -16.47170 -16.42765 -15.44383 -15.29154 -14.94090 -14.42406 -14.17275 -13.75080 -13.51498 -13.14009 -13.02230 -12.86495 -12.56491 -12.32302 -12.20681 -11.95329 -11.86189 -11.64255 -11.56936 -11.21507 -10.98814 -10.91848 -10.83522 -10.71252 -10.59016 -10.48030 -10.33483 -10.10694 -9.60323 -8.93684 -8.81521 -8.41972 -8.39844 -7.58407 -6.02582 -4.07417 0.93352 1.58752 1.90420 2.64083 3.32261 3.36745 3.38686 3.49328 4.01067 4.45979 4.81411 4.94682 5.08077 5.15434 5.18316 5.27695 5.31321 5.35220 5.39129 5.52272 5.59690 5.67190 5.73629 5.77969 5.89216 5.93420 5.98032 6.06372 6.11059 6.21010 6.26031 6.29217 6.44409 6.50146 6.54700 6.58860 7.11777 7.49293 7.59728 7.94422 8.26344 8.48881 8.92375 9.15157 9.57765 11.05319 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.004016 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.979236 B = 6969.931368 C = 8021.930483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.507 3.493 16 O -0.546 6.546 17 C -0.143 4.143 18 C -0.046 4.046 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.214 4.214 22 S 0.075 5.925 23 C -0.209 4.209 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 16.886 7.621 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.009 4.009 5 N -0.327 5.327 6 C 0.127 3.873 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.294 3.706 16 O -0.424 6.424 17 C -0.183 4.183 18 C -0.087 4.087 19 C -0.106 4.106 20 C -0.157 4.157 21 C -0.349 4.349 22 S 0.338 5.662 23 C -0.344 4.344 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.177 17.113 8.841 21.336 hybrid contribution 0.552 -1.307 -0.792 1.625 sum -8.625 15.806 8.048 19.723 Atomic orbital electron populations 1.21759 0.95096 1.01811 1.01331 1.21559 0.95354 0.96513 1.00193 1.21963 1.01494 0.96027 1.00994 1.21534 0.81836 1.00969 0.96562 1.48177 1.05212 1.28033 1.51294 1.19229 0.94461 0.82596 0.90995 1.21413 1.41136 0.97356 0.96687 0.92594 1.24925 0.95264 0.98698 0.95147 1.69923 1.42011 1.27942 1.13476 0.86582 0.78399 0.81857 0.80718 1.20276 1.21183 1.20209 1.20307 0.87214 0.82268 0.80770 1.90657 1.14626 1.73648 1.63476 1.21907 0.99312 0.97556 0.99511 1.20080 0.96560 0.94513 0.97499 1.19094 1.01426 0.95804 0.94251 1.20175 1.01443 0.93095 1.00985 1.25553 1.08929 1.03946 0.96511 1.84194 1.62213 1.05320 1.14457 1.25513 1.08256 1.02105 0.98563 0.92910 0.92875 0.92469 0.90470 0.92740 0.92461 0.93044 0.90362 0.91441 0.95181 0.93865 0.92697 0.89740 0.88773 0.90067 0.90311 0.84164 0.82065 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.12 -1.62 3.11 -90.62 -0.28 -1.90 16 3 C -0.15 -1.87 7.59 37.16 0.28 -1.59 16 4 C 0.12 1.86 4.89 -4.04 -0.02 1.84 16 5 N -0.60 -12.40 2.26 -175.05 -0.40 -12.80 16 6 C 0.25 6.42 5.22 -5.19 -0.03 6.39 16 7 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 11 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 C 0.51 10.34 6.45 -10.98 -0.07 10.27 16 16 O -0.55 -13.54 15.54 5.56 0.09 -13.45 16 17 C -0.14 -2.10 4.03 -27.88 -0.11 -2.22 16 18 C -0.05 -0.65 4.77 -27.88 -0.13 -0.78 16 19 C -0.09 -1.12 5.05 -106.25 -0.54 -1.66 16 20 C -0.13 -1.34 9.98 -41.21 -0.41 -1.76 16 21 C -0.21 -2.02 11.23 29.04 0.33 -1.70 16 22 S 0.07 0.73 23.34 -107.50 -2.51 -1.78 16 23 C -0.21 -2.34 10.98 29.04 0.32 -2.02 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 28 H 0.05 0.61 6.49 -51.93 -0.34 0.27 16 29 H 0.06 0.85 6.87 -51.93 -0.36 0.49 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 32 H 0.07 0.92 6.10 -51.93 -0.32 0.60 16 33 H 0.03 0.80 7.94 -51.93 -0.41 0.38 16 34 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 1.16 7.37 -51.93 -0.38 0.78 16 37 H 0.09 1.21 4.80 -51.93 -0.25 0.96 16 38 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 39 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 40 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -32.22 354.68 -9.12 -41.34 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.62 Total: 0.34 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.75 Total: -9.94 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.34 Total: -38.71 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.22 -9.12 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751200243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.321 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds