Wall clock time and date at job start Tue Mar 31 2020 07:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47526 * 2 1 4 4 C 1.53007 * 109.47163 * 120.00035 * 2 1 3 5 5 N 1.46495 * 109.47317 * 174.10856 * 4 2 1 6 6 C 1.46503 * 119.99581 * 276.68493 * 5 4 2 7 7 C 1.50703 * 109.47039 * 269.99792 * 6 5 4 8 8 H 1.07997 * 119.99720 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99940 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99893 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99773 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47210 * 60.00036 * 11 9 7 13 13 H 1.48502 * 109.46952 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47500 * 299.99952 * 11 9 7 15 15 C 1.34773 * 120.00382 * 96.68372 * 5 4 2 16 16 O 1.21276 * 120.00246 * 185.40707 * 15 5 4 17 17 C 1.50707 * 119.99589 * 5.40213 * 15 5 4 18 18 C 1.53006 * 109.46751 * 174.69531 * 17 15 5 19 19 C 1.50695 * 109.46729 * 180.02562 * 18 17 15 20 20 C 1.38428 * 122.54063 * 270.00038 * 19 18 17 21 21 C 1.33390 * 114.92144 * 180.02562 * 20 19 18 22 22 S 1.75880 * 109.59340 * 359.75774 * 21 20 19 23 23 C 1.33392 * 122.54231 * 90.02630 * 19 18 17 24 24 H 1.09002 * 109.46950 * 300.00617 * 1 2 3 25 25 H 1.09001 * 109.47026 * 60.00163 * 1 2 3 26 26 H 1.08993 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46950 * 239.99383 * 2 1 3 28 28 H 1.08992 * 109.47163 * 64.70242 * 3 2 1 29 29 H 1.08997 * 109.47085 * 184.71083 * 3 2 1 30 30 H 1.09006 * 109.46517 * 304.70376 * 3 2 1 31 31 H 1.08999 * 109.47092 * 54.10553 * 4 2 1 32 32 H 1.09002 * 109.46641 * 294.10771 * 4 2 1 33 33 H 1.08995 * 109.47328 * 29.99941 * 6 5 4 34 34 H 1.09003 * 109.47139 * 150.00165 * 6 5 4 35 35 H 0.97003 * 119.99995 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.46807 * 54.70198 * 17 15 5 37 37 H 1.08993 * 109.47160 * 294.69455 * 17 15 5 38 38 H 1.08996 * 109.46987 * 60.00331 * 18 17 15 39 39 H 1.09002 * 109.46792 * 300.00267 * 18 17 15 40 40 H 1.07998 * 122.53387 * 0.04247 * 20 19 18 41 41 H 1.07999 * 125.19947 * 180.02562 * 21 20 19 42 42 H 1.08007 * 125.19727 * 359.95269 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4981 -0.8453 1.1805 6 6 4.1049 -1.9450 0.4264 7 6 4.2993 -3.1307 1.3360 8 1 4.0004 -3.0712 2.3720 9 6 4.8588 -4.2915 0.8455 10 7 5.2224 -4.3641 -0.4163 11 14 5.0991 -5.7614 1.9728 12 1 3.7835 -6.1955 2.5075 13 1 5.7143 -6.8761 1.2084 14 1 5.9900 -5.3816 3.0985 15 6 4.2813 0.0522 1.8110 16 8 5.4855 0.0081 1.6742 17 6 3.6605 1.1107 2.6859 18 6 4.7648 1.9094 3.3815 19 6 4.1440 2.9674 4.2569 20 6 3.8571 4.2408 3.7961 21 6 3.3100 5.0555 4.6996 22 16 3.1246 4.2030 6.2267 23 6 3.8298 2.7480 5.5346 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.7473 1.9314 0.9290 29 1 3.1268 1.4435 -0.0844 30 1 1.6096 1.9800 -0.8449 31 1 1.5931 -1.7139 1.3036 32 1 1.7654 -0.1501 2.1361 33 1 3.4504 -2.2240 -0.3993 34 1 5.0704 -1.6266 0.0331 35 1 5.6157 -5.1808 -0.7615 36 1 3.0274 0.6367 3.4360 37 1 3.0582 1.7813 2.0731 38 1 5.3979 2.3833 2.6315 39 1 5.3672 1.2387 3.9943 40 1 4.0606 4.5510 2.7818 41 1 3.0208 6.0803 4.5195 42 1 3.9811 1.8177 6.0620 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751200243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:41 Heat of formation + Delta-G solvation = -40.774236 kcal Electronic energy + Delta-G solvation = -21803.855188 eV Core-core repulsion = 18681.227943 eV Total energy + Delta-G solvation = -3122.627245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98473 -39.15507 -37.71363 -35.53725 -34.10575 -33.73289 -30.41948 -29.33604 -28.06182 -27.01720 -26.38093 -24.52049 -23.07130 -21.39780 -19.71661 -19.56540 -18.61426 -18.52072 -17.82455 -17.12166 -16.73841 -16.22107 -15.91119 -15.50169 -14.97992 -14.72305 -14.45933 -14.11356 -14.00869 -13.86105 -13.72811 -13.41923 -13.30275 -13.04987 -12.91729 -12.78876 -12.70055 -12.63735 -12.45277 -12.28869 -12.13491 -11.85610 -11.77515 -11.63227 -11.57846 -11.46882 -10.64461 -10.56172 -9.66075 -9.36734 -9.21918 -8.22198 -6.37715 0.14260 0.82345 1.12463 1.35736 1.40010 1.47355 1.78155 1.87489 2.32749 2.49472 3.06877 3.67961 3.92684 4.00074 4.05921 4.14055 4.23648 4.26556 4.36733 4.50233 4.59321 4.66367 4.72435 4.75736 4.82439 4.89634 4.95028 5.05047 5.07319 5.08657 5.15461 5.22015 5.25569 5.29943 5.43312 5.50986 5.54369 5.59279 5.65029 5.87938 6.07163 6.70275 6.83686 7.28442 7.51769 8.84557 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.004016 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.979236 B = 6969.931368 C = 8021.930483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.264 3.736 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.260 1.260 13 H -0.279 1.279 14 H -0.277 1.277 15 C 0.499 3.501 16 O -0.601 6.601 17 C -0.124 4.124 18 C -0.040 4.040 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.207 4.207 22 S 0.102 5.898 23 C -0.223 4.223 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.017 0.983 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.150 0.850 41 H 0.188 0.812 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 18.346 9.573 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.200 4.200 4 C -0.012 4.012 5 N -0.330 5.330 6 C 0.142 3.858 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.202 1.202 15 C 0.289 3.711 16 O -0.483 6.483 17 C -0.164 4.164 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.173 4.173 21 C -0.342 4.342 22 S 0.366 5.634 23 C -0.358 4.358 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.168 0.832 41 H 0.206 0.794 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.638 18.596 10.802 24.453 hybrid contribution 1.304 -1.701 -1.406 2.564 sum -10.334 16.895 9.396 21.921 Atomic orbital electron populations 1.21706 0.92200 1.02210 1.03117 1.21507 0.97631 0.96711 0.97493 1.21928 0.99599 0.95375 1.03113 1.21852 0.78626 1.01439 0.99304 1.48170 1.07441 1.26796 1.50589 1.18635 0.92252 0.83849 0.91028 1.21705 1.41465 0.98357 0.96790 0.92750 1.25870 0.94670 1.01864 0.96717 1.70054 1.42550 1.28916 1.15332 0.85475 0.78976 0.77993 0.78421 1.18412 1.20360 1.20237 1.21345 0.86636 0.82725 0.80433 1.90623 1.17231 1.75176 1.65264 1.21858 0.99560 0.96011 0.98954 1.19915 0.96124 0.94742 0.97249 1.18921 1.02456 0.95864 0.94297 1.20262 1.02378 0.92708 1.01946 1.25905 1.07482 1.04908 0.95879 1.84142 1.61115 1.03980 1.14190 1.25691 1.08280 1.03280 0.98582 0.90651 0.91530 0.92844 0.93704 0.90279 0.95375 0.91251 0.91499 0.87942 0.96497 0.98710 0.92425 0.87767 0.86185 0.91311 0.92277 0.83228 0.79446 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.19 71.98 0.66 -1.97 16 2 C -0.11 -3.06 3.11 -10.79 -0.03 -3.10 16 3 C -0.14 -3.37 7.59 71.98 0.55 -2.82 16 4 C 0.11 3.48 4.89 86.38 0.42 3.91 16 5 N -0.60 -25.80 2.26 -826.14 -1.87 -27.67 16 6 C 0.26 14.60 5.22 85.63 0.45 15.05 16 7 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.01 0.45 5.46 84.66 0.46 0.92 16 10 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 11 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 15 C 0.50 20.95 6.45 87.66 0.57 21.52 16 16 O -0.60 -31.61 15.54 -3.02 -0.05 -31.66 16 17 C -0.12 -3.53 4.03 29.85 0.12 -3.41 16 18 C -0.04 -1.12 4.77 29.85 0.14 -0.98 16 19 C -0.10 -2.30 5.05 -20.92 -0.11 -2.41 16 20 C -0.14 -2.69 9.98 21.22 0.21 -2.48 16 21 C -0.21 -3.21 11.23 66.72 0.75 -2.46 16 22 S 0.10 1.68 23.34 -56.49 -1.32 0.36 16 23 C -0.22 -4.57 10.98 66.72 0.73 -3.84 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.49 8.01 -2.39 -0.02 1.47 16 28 H 0.08 1.46 6.49 -2.39 -0.02 1.45 16 29 H 0.03 0.82 6.87 -2.39 -0.02 0.80 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 32 H 0.10 2.51 6.10 -2.39 -0.01 2.49 16 33 H 0.02 0.96 7.94 -2.39 -0.02 0.95 16 34 H -0.01 -0.34 7.35 -2.39 -0.02 -0.35 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.10 2.60 7.37 -2.39 -0.02 2.58 16 37 H 0.12 2.80 4.80 -2.39 -0.01 2.79 16 38 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 39 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -74.09 354.68 5.23 -68.86 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.99 Total: 13.35 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.16 Total: -13.74 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.58 Total: -84.56 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.66 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.32 Total: 0.36 kcal Total: -74.09 5.23 -68.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751200243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds