Wall clock time and date at job start Tue Mar 31 2020 07:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47423 * 2 1 4 4 C 1.52997 * 109.47264 * 120.00359 * 2 1 3 5 5 N 1.46499 * 109.47287 * 66.93593 * 4 2 1 6 6 C 1.46499 * 119.99976 * 277.52766 * 5 4 2 7 7 C 1.50701 * 109.47114 * 269.99541 * 6 5 4 8 8 H 1.08004 * 119.99420 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00496 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99555 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00185 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46796 * 60.00451 * 11 9 7 13 13 H 1.48500 * 109.46923 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47383 * 300.00808 * 11 9 7 15 15 C 1.34774 * 120.00067 * 97.52313 * 5 4 2 16 16 O 1.21589 * 120.00216 * 186.62075 * 15 5 4 17 17 C 1.47608 * 120.00248 * 6.61716 * 15 5 4 18 18 C 1.39716 * 120.07770 * 315.29420 * 17 15 5 19 19 C 1.37740 * 119.94827 * 179.73655 * 18 17 15 20 20 C 1.38926 * 120.11282 * 0.53779 * 19 18 17 21 21 O 1.35768 * 119.91485 * 179.76704 * 20 19 18 22 22 C 1.39162 * 120.16829 * 359.47731 * 20 19 18 23 23 F 1.35097 * 119.97883 * 180.25806 * 22 20 19 24 24 C 1.37901 * 120.04076 * 0.24164 * 22 20 19 25 25 H 1.09005 * 109.46564 * 299.99495 * 1 2 3 26 26 H 1.08994 * 109.46913 * 59.99116 * 1 2 3 27 27 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46863 * 240.00194 * 2 1 3 29 29 H 1.08997 * 109.47640 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47344 * 300.00725 * 3 2 1 31 31 H 1.08999 * 109.46943 * 60.00243 * 3 2 1 32 32 H 1.08999 * 109.47058 * 306.93995 * 4 2 1 33 33 H 1.09003 * 109.47217 * 186.93798 * 4 2 1 34 34 H 1.08999 * 109.47550 * 29.99775 * 6 5 4 35 35 H 1.09002 * 109.47351 * 149.99969 * 6 5 4 36 36 H 0.97002 * 119.99586 * 179.97438 * 10 9 7 37 37 H 1.08002 * 120.02965 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.94051 * 180.27216 * 19 18 17 39 39 H 0.96704 * 113.99554 * 269.71534 * 21 20 19 40 40 H 1.08004 * 120.05514 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6927 -2.1422 1.1686 6 6 0.3553 -2.5928 1.5617 7 6 0.3514 -2.9341 3.0295 8 1 1.2548 -2.8257 3.6115 9 6 -0.8056 -3.3836 3.6299 10 7 -1.9057 -3.5150 2.9213 11 14 -0.8101 -3.8073 5.4492 12 1 -0.4404 -2.6048 6.2383 13 1 -2.1661 -4.2627 5.8479 14 1 0.1724 -4.8903 5.7077 15 6 2.6035 -3.0350 0.7329 16 8 2.2811 -4.1932 0.5513 17 6 3.9926 -2.6067 0.4760 18 6 4.2425 -1.4190 -0.2161 19 6 5.5397 -1.0192 -0.4496 20 6 6.6001 -1.8005 -0.0079 21 8 7.8772 -1.4049 -0.2444 22 6 6.3567 -2.9845 0.6817 23 9 7.3908 -3.7387 1.1141 24 6 5.0606 -3.3882 0.9242 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.5789 -0.2842 2.1348 33 1 3.1230 -0.6151 1.3134 34 1 -0.3663 -1.7983 1.3715 35 1 0.0846 -3.4758 0.9827 36 1 -2.7196 -3.8316 3.3435 37 1 3.4192 -0.8125 -0.5637 38 1 5.7328 -0.0989 -0.9808 39 1 8.2432 -1.7343 -1.0767 40 1 4.8715 -4.3073 1.4590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767875771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:30 Heat of formation + Delta-G solvation = -113.662692 kcal Electronic energy + Delta-G solvation = -24283.036923 eV Core-core repulsion = 20591.035822 eV Total energy + Delta-G solvation = -3692.001101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.02851 -41.62716 -39.96418 -38.03463 -37.62763 -35.36675 -34.18710 -31.95102 -31.55146 -29.38331 -27.95978 -27.05381 -25.62585 -23.99448 -23.76136 -21.62040 -20.55258 -19.69572 -18.76185 -18.58040 -17.95945 -17.45454 -17.14262 -17.00010 -16.50838 -16.05502 -15.92956 -15.53453 -15.04800 -14.98255 -14.81201 -14.44866 -14.17100 -13.75575 -13.56786 -13.43117 -13.25504 -13.12517 -12.99027 -12.92104 -12.66803 -12.53417 -12.17808 -12.03648 -11.84609 -11.74073 -11.51046 -11.40393 -10.86773 -10.60201 -10.13195 -9.70898 -9.44352 -8.22965 -6.36880 -0.37841 -0.00763 1.35176 1.38795 1.45852 1.63759 2.11459 2.38495 2.45805 2.85389 3.06673 3.24220 3.42832 3.66230 3.87484 3.93165 4.04074 4.07402 4.23897 4.49729 4.60516 4.64265 4.72951 4.85117 4.89920 4.94148 4.96893 5.05019 5.09993 5.12372 5.20913 5.23582 5.33012 5.46508 5.53509 5.55251 5.60240 5.82888 6.06987 6.63122 6.68355 6.71963 7.20314 7.36730 8.83530 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.005085 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.284894 B = 5505.265993 C = 6768.350958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.096 3.904 5 N -0.585 5.585 6 C 0.251 3.749 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.962 3.038 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.281 1.281 15 C 0.539 3.461 16 O -0.593 6.593 17 C -0.114 4.114 18 C -0.086 4.086 19 C -0.101 4.101 20 C 0.106 3.894 21 O -0.491 6.491 22 C 0.055 3.945 23 F -0.139 7.139 24 C -0.106 4.106 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.055 0.945 35 H -0.005 1.005 36 H 0.267 0.733 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.418 0.582 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.685 12.687 -9.415 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.130 4.130 3 C -0.198 4.198 4 C -0.026 4.026 5 N -0.313 5.313 6 C 0.131 3.869 7 C -0.587 4.587 8 H 0.067 0.933 9 C -0.186 4.186 10 N -0.563 5.563 11 Si 0.786 3.214 12 H -0.185 1.185 13 H -0.202 1.202 14 H -0.206 1.206 15 C 0.328 3.672 16 O -0.475 6.475 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.119 4.119 20 C 0.060 3.940 21 O -0.305 6.305 22 C 0.036 3.964 23 F -0.117 7.117 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.279 0.721 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.282 12.320 -8.936 21.568 hybrid contribution -0.399 -1.584 0.886 1.858 sum 14.883 10.736 -8.050 20.039 Atomic orbital electron populations 1.22030 0.95826 1.01225 1.02038 1.21653 0.96147 0.98144 0.97048 1.21801 1.02144 0.92785 1.03026 1.22207 1.01889 0.79024 0.99480 1.48106 1.13688 1.08095 1.61413 1.19134 0.79156 0.95071 0.93588 1.21702 0.96179 1.45301 0.95526 0.93274 1.25758 0.94944 0.94969 1.02966 1.70029 1.01347 1.46961 1.37988 0.85555 0.77315 0.78895 0.79586 1.18550 1.20156 1.20636 1.18762 0.85943 0.85065 0.77436 1.90736 1.81370 1.20613 1.54789 1.19715 0.91490 0.97627 1.02927 1.22038 0.99304 0.93439 0.95651 1.21595 0.89331 1.01386 0.99594 1.18639 0.86512 0.90799 0.98076 1.84762 1.23626 1.75028 1.47053 1.17997 0.83514 0.91929 1.03008 1.91481 1.56807 1.75420 1.88033 1.20981 0.90510 1.00416 1.00712 0.93006 0.91073 0.94543 0.90319 0.90284 0.90791 0.92342 0.90995 0.87999 0.92694 0.98645 0.92366 0.81372 0.79299 0.72112 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.21 71.98 0.59 -3.85 16 2 C -0.11 -2.62 2.15 -10.79 -0.02 -2.65 16 3 C -0.14 -2.12 9.11 71.98 0.66 -1.47 16 4 C 0.10 2.93 4.43 86.38 0.38 3.32 16 5 N -0.58 -24.90 2.42 -829.84 -2.01 -26.91 16 6 C 0.25 13.38 4.44 85.63 0.38 13.76 16 7 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.01 0.76 5.46 84.65 0.46 1.22 16 10 N -0.92 -55.51 13.29 21.45 0.28 -55.22 16 11 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 15 C 0.54 23.63 7.27 86.72 0.63 24.26 16 16 O -0.59 -32.23 16.53 -4.00 -0.07 -32.30 16 17 C -0.11 -3.70 5.14 -20.09 -0.10 -3.80 16 18 C -0.09 -1.88 7.38 22.51 0.17 -1.72 16 19 C -0.10 -1.59 9.97 22.32 0.22 -1.37 16 20 C 0.11 2.08 6.72 22.66 0.15 2.23 16 21 O -0.49 -7.48 13.35 -90.95 -1.21 -8.69 16 22 C 0.06 1.46 7.30 22.41 0.16 1.62 16 23 F -0.14 -3.86 17.10 44.97 0.77 -3.09 16 24 C -0.11 -3.38 9.65 22.55 0.22 -3.17 16 25 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.34 5.26 -2.39 -0.01 1.33 16 28 H 0.08 1.77 6.33 -2.39 -0.02 1.75 16 29 H 0.08 0.85 8.02 -2.39 -0.02 0.83 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 2.36 8.12 -2.39 -0.02 2.35 16 33 H 0.10 2.58 4.98 -2.39 -0.01 2.57 16 34 H 0.06 2.88 5.05 -2.39 -0.01 2.86 16 35 H 0.00 -0.29 7.34 -2.39 -0.02 -0.30 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.17 3.16 3.40 -2.91 -0.01 3.15 16 38 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.42 2.10 9.06 -74.05 -0.67 1.43 16 40 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -77.82 332.50 4.34 -73.48 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.41 Total: 8.64 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.14 Total: -3.11 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.72 Total: -82.13 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.28 Total: -40.99 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.77 Total: -3.09 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -77.82 4.34 -73.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767875771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.181 kcal (2) G-P(sol) polarization free energy of solvation -77.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds