Wall clock time and date at job start Tue Mar 31 2020 07:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46933 * 250.71320 * 3 2 1 5 5 C 1.46497 * 120.00007 * 270.00010 * 4 3 2 6 6 C 1.47203 * 109.47187 * 269.99970 * 5 4 3 7 7 C 5.38485 * 150.86439 * 199.88739 * 2 1 3 8 8 C 6.72325 * 155.00698 * 190.81758 * 2 1 3 9 9 C 1.34779 * 120.00064 * 90.00128 * 4 3 2 10 10 O 1.21282 * 119.99913 * 179.97438 * 9 4 3 11 11 C 1.50703 * 119.99651 * 359.97438 * 9 4 3 12 12 C 1.50707 * 109.46832 * 179.97438 * 11 9 4 13 13 C 1.37639 * 120.12442 * 265.00105 * 12 11 9 14 14 C 1.38615 * 120.24582 * 179.97438 * 13 12 11 15 15 C 1.38658 * 120.50253 * 0.02562 * 14 13 12 16 16 C 1.37599 * 120.24742 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12641 * 84.72613 * 12 11 9 18 18 C 1.41392 * 120.24744 * 359.97438 * 17 12 11 19 19 H 1.08008 * 119.99829 * 333.89107 * 18 17 12 20 20 C 1.39936 * 120.00157 * 153.88891 * 18 17 12 21 21 N 1.30823 * 120.00218 * 343.72133 * 20 18 17 22 22 Si 1.86806 * 120.00088 * 163.72365 * 20 18 17 23 23 H 1.48497 * 109.46918 * 60.00210 * 22 20 18 24 24 H 1.48502 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46900 * 300.00273 * 22 20 18 26 26 H 4.40639 * 5.51519 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47006 * 130.71590 * 3 2 1 28 28 H 1.08999 * 109.47179 * 10.71579 * 3 2 1 29 29 H 1.08994 * 109.47431 * 30.00288 * 5 4 3 30 30 H 1.09008 * 109.47246 * 150.00094 * 5 4 3 31 31 H 1.08996 * 109.47271 * 103.61271 * 8 7 6 32 32 H 1.09007 * 109.46688 * 223.60982 * 8 7 6 33 33 H 1.08999 * 109.47220 * 343.60147 * 8 7 6 34 34 H 1.08993 * 109.47467 * 299.99623 * 11 9 4 35 35 H 1.09000 * 109.47257 * 60.00091 * 11 9 4 36 36 H 1.08005 * 119.88027 * 0.02562 * 13 12 11 37 37 H 1.08003 * 119.74917 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.87841 * 180.02562 * 15 14 13 39 39 H 1.07991 * 120.12832 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00340 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4571 1.3037 5 6 3.3776 1.8828 1.5365 6 6 4.7677 2.2081 1.1779 7 6 5.8775 2.4654 0.8919 8 6 7.2677 2.7901 0.5331 9 6 3.3591 -0.4347 2.2889 10 8 3.7636 -0.0568 3.3681 11 6 3.1081 -1.9012 2.0496 12 6 3.4356 -2.6774 3.2992 13 6 4.6773 -3.2517 3.4502 14 6 4.9814 -3.9656 4.5987 15 6 4.0408 -4.1104 5.6072 16 6 2.7928 -3.5457 5.4772 17 6 2.4752 -2.8128 4.3184 18 6 1.1985 -2.2219 4.1771 19 1 1.0720 -1.3536 3.5472 20 6 0.0988 -2.7619 4.8533 21 7 0.1652 -3.9703 5.3501 22 14 -1.4642 -1.7573 5.0466 23 1 -2.0010 -1.4141 3.7053 24 1 -2.4728 -2.5499 5.7949 25 1 -1.1615 -0.5095 5.7927 26 1 -1.0501 -0.0002 0.0000 27 1 3.0090 0.6712 -0.7789 28 1 3.0098 -1.0089 -0.1911 29 1 2.6966 2.4726 0.9231 30 1 3.2105 2.1129 2.5888 31 1 7.3189 3.0505 -0.5240 32 1 7.6098 3.6342 1.1321 33 1 7.9040 1.9264 0.7260 34 1 2.0601 -2.0531 1.7914 35 1 3.7381 -2.2488 1.2308 36 1 5.4178 -3.1449 2.6712 37 1 5.9584 -4.4126 4.7090 38 1 4.2887 -4.6684 6.4979 39 1 2.0616 -3.6600 6.2636 40 1 -0.5969 -4.3445 5.8192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776960159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:23 Heat of formation + Delta-G solvation = 87.146014 kcal Electronic energy + Delta-G solvation = -22777.228310 eV Core-core repulsion = 19524.704152 eV Total energy + Delta-G solvation = -3252.524158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.62945 -37.44793 -35.84726 -34.19495 -33.58190 -32.52228 -31.74150 -29.75394 -29.38177 -27.14324 -27.02092 -25.37309 -24.51847 -20.90134 -20.35938 -19.15378 -18.10019 -17.10321 -16.83585 -16.45816 -16.10124 -15.27337 -14.95720 -14.42155 -13.90320 -13.87953 -13.73025 -13.55537 -13.44807 -13.23343 -13.11013 -12.85054 -12.62972 -12.52788 -11.68397 -11.53170 -11.15990 -11.03698 -10.95863 -10.65785 -10.52191 -10.36944 -10.12495 -9.99791 -9.65357 -9.44421 -9.33099 -9.13231 -9.10299 -8.75809 -7.27256 -7.25177 -6.69656 -4.30089 2.31614 2.78147 2.84453 2.88779 2.93260 3.04376 3.07931 3.11551 3.27281 3.31206 3.78931 3.96763 4.28960 4.50528 4.69799 5.07616 5.20446 5.37856 5.44462 5.46833 5.52047 5.60772 5.75049 5.80767 5.88723 6.00855 6.04257 6.14245 6.31471 6.46721 6.54645 6.66558 6.83320 7.12907 7.33604 7.46259 7.60280 7.69920 7.70426 7.73420 7.96667 8.11292 8.16998 8.35779 8.68246 8.76203 8.95972 9.05689 10.24517 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.005627 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.192704 B = 4975.037459 C = 6421.117282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.212 4.212 3 C 0.223 3.777 4 N -0.621 5.621 5 C 0.228 3.772 6 C -0.193 4.193 7 C -0.186 4.186 8 C -0.038 4.038 9 C 0.521 3.479 10 O -0.508 6.508 11 C -0.068 4.068 12 C -0.183 4.183 13 C -0.081 4.081 14 C -0.239 4.239 15 C -0.107 4.107 16 C -0.159 4.159 17 C 0.130 3.870 18 C -0.455 4.455 19 H 0.073 0.927 20 C 0.078 3.922 21 N -0.796 5.796 22 Si 0.901 3.099 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.216 0.784 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 8.706 -11.465 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.213 4.213 3 C 0.101 3.899 4 N -0.356 5.356 5 C 0.106 3.894 6 C -0.194 4.194 7 C -0.188 4.188 8 C -0.094 4.094 9 C 0.311 3.689 10 O -0.380 6.380 11 C -0.108 4.108 12 C -0.185 4.185 13 C -0.099 4.099 14 C -0.259 4.259 15 C -0.125 4.125 16 C -0.178 4.178 17 C 0.128 3.872 18 C -0.485 4.485 19 H 0.091 0.909 20 C -0.139 4.139 21 N -0.421 5.421 22 Si 0.726 3.274 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.189 1.189 26 H 0.232 0.768 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.258 8.705 -10.705 14.177 hybrid contribution -1.004 0.400 0.084 1.084 sum 2.254 9.105 -10.621 14.169 Atomic orbital electron populations 1.24953 0.95940 1.00286 0.98478 1.23572 0.94951 1.01041 1.01777 1.18351 0.83650 1.02244 0.85695 1.48185 1.67671 1.06336 1.13417 1.18159 0.86186 0.82020 1.03074 1.22970 0.95298 1.01174 0.99983 1.22427 0.94388 0.99904 1.02058 1.18830 0.86850 1.02161 1.01521 1.21393 0.75696 0.88790 0.83021 1.90687 1.43150 1.80267 1.23943 1.20318 1.03253 0.89084 0.98140 1.19065 0.96389 1.07283 0.95751 1.20296 0.94864 0.98174 0.96571 1.20295 0.98727 1.09537 0.97320 1.20675 0.94624 1.00006 0.97235 1.21294 0.95224 1.02638 0.98668 1.17324 0.91644 0.89045 0.89235 1.19435 0.92084 1.11940 1.25017 0.90886 1.25854 1.00532 0.94224 0.93301 1.69812 1.31774 1.13007 1.27530 0.86475 0.80614 0.80870 0.79436 1.19031 1.20340 1.18896 0.76751 0.88493 0.87686 0.88691 0.87566 0.90498 0.90328 0.90179 0.88383 0.90627 0.89823 0.89684 0.89592 0.86516 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 19.25 29.55 0.57 -1.75 16 2 C -0.21 -2.90 13.52 -37.12 -0.50 -3.40 16 3 C 0.22 2.78 5.69 -6.83 -0.04 2.74 16 4 N -0.62 -9.93 2.39 -180.37 -0.43 -10.36 16 5 C 0.23 3.30 5.88 -6.83 -0.04 3.26 16 6 C -0.19 -2.88 13.68 -37.11 -0.51 -3.39 16 7 C -0.19 -2.56 14.13 -37.12 -0.52 -3.08 16 8 C -0.04 -0.35 10.32 34.37 0.35 0.01 16 9 C 0.52 10.67 7.27 -10.98 -0.08 10.59 16 10 O -0.51 -12.58 15.61 5.56 0.09 -12.50 16 11 C -0.07 -1.40 3.73 -29.03 -0.11 -1.51 16 12 C -0.18 -4.52 4.43 -103.91 -0.46 -4.98 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 14 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 15 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 16 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 17 C 0.13 3.54 5.56 -106.82 -0.59 2.95 16 18 C -0.46 -12.21 8.14 -37.75 -0.31 -12.52 16 19 H 0.07 1.93 6.67 -52.48 -0.35 1.58 16 20 C 0.08 1.99 5.16 -17.35 -0.09 1.90 16 21 N -0.80 -20.79 10.96 55.55 0.61 -20.18 16 22 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 26 H 0.22 2.16 7.80 -54.09 -0.42 1.74 16 27 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.11 1.20 6.44 -51.93 -0.33 0.86 16 29 H 0.10 1.08 8.07 -51.93 -0.42 0.66 16 30 H 0.11 1.71 7.42 -51.92 -0.39 1.33 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.02 6.89 -51.93 -0.36 1.67 16 35 H 0.08 1.29 7.31 -51.93 -0.38 0.91 16 36 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.08 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.25 6.20 -52.49 -0.33 2.93 16 40 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -32.88 356.86 -8.30 -41.18 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.06 Total: 7.64 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -3.84 Total: -25.28 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.18 Total: -30.54 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.88 -8.30 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776960159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.325 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds