Wall clock time and date at job start Tue Mar 31 2020 07:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46933 * 250.71320 * 3 2 1 5 5 C 1.46497 * 120.00007 * 270.00010 * 4 3 2 6 6 C 1.47203 * 109.47187 * 269.99970 * 5 4 3 7 7 C 5.38485 * 150.86439 * 199.88739 * 2 1 3 8 8 C 6.72325 * 155.00698 * 190.81758 * 2 1 3 9 9 C 1.34779 * 120.00064 * 90.00128 * 4 3 2 10 10 O 1.21282 * 119.99913 * 179.97438 * 9 4 3 11 11 C 1.50703 * 119.99651 * 359.97438 * 9 4 3 12 12 C 1.50707 * 109.46832 * 179.97438 * 11 9 4 13 13 C 1.37639 * 120.12442 * 265.00105 * 12 11 9 14 14 C 1.38615 * 120.24582 * 179.97438 * 13 12 11 15 15 C 1.38658 * 120.50253 * 0.02562 * 14 13 12 16 16 C 1.37599 * 120.24742 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12641 * 84.72613 * 12 11 9 18 18 C 1.41392 * 120.24744 * 359.97438 * 17 12 11 19 19 H 1.08008 * 119.99829 * 333.89107 * 18 17 12 20 20 C 1.39936 * 120.00157 * 153.88891 * 18 17 12 21 21 N 1.30823 * 120.00218 * 343.72133 * 20 18 17 22 22 Si 1.86806 * 120.00088 * 163.72365 * 20 18 17 23 23 H 1.48497 * 109.46918 * 60.00210 * 22 20 18 24 24 H 1.48502 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46900 * 300.00273 * 22 20 18 26 26 H 4.40639 * 5.51519 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47006 * 130.71590 * 3 2 1 28 28 H 1.08999 * 109.47179 * 10.71579 * 3 2 1 29 29 H 1.08994 * 109.47431 * 30.00288 * 5 4 3 30 30 H 1.09008 * 109.47246 * 150.00094 * 5 4 3 31 31 H 1.08996 * 109.47271 * 103.61271 * 8 7 6 32 32 H 1.09007 * 109.46688 * 223.60982 * 8 7 6 33 33 H 1.08999 * 109.47220 * 343.60147 * 8 7 6 34 34 H 1.08993 * 109.47467 * 299.99623 * 11 9 4 35 35 H 1.09000 * 109.47257 * 60.00091 * 11 9 4 36 36 H 1.08005 * 119.88027 * 0.02562 * 13 12 11 37 37 H 1.08003 * 119.74917 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.87841 * 180.02562 * 15 14 13 39 39 H 1.07991 * 120.12832 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00340 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4571 1.3037 5 6 3.3776 1.8828 1.5365 6 6 4.7677 2.2081 1.1779 7 6 5.8775 2.4654 0.8919 8 6 7.2677 2.7901 0.5331 9 6 3.3591 -0.4347 2.2889 10 8 3.7636 -0.0568 3.3681 11 6 3.1081 -1.9012 2.0496 12 6 3.4356 -2.6774 3.2992 13 6 4.6773 -3.2517 3.4502 14 6 4.9814 -3.9656 4.5987 15 6 4.0408 -4.1104 5.6072 16 6 2.7928 -3.5457 5.4772 17 6 2.4752 -2.8128 4.3184 18 6 1.1985 -2.2219 4.1771 19 1 1.0720 -1.3536 3.5472 20 6 0.0988 -2.7619 4.8533 21 7 0.1652 -3.9703 5.3501 22 14 -1.4642 -1.7573 5.0466 23 1 -2.0010 -1.4141 3.7053 24 1 -2.4728 -2.5499 5.7949 25 1 -1.1615 -0.5095 5.7927 26 1 -1.0501 -0.0002 0.0000 27 1 3.0090 0.6712 -0.7789 28 1 3.0098 -1.0089 -0.1911 29 1 2.6966 2.4726 0.9231 30 1 3.2105 2.1129 2.5888 31 1 7.3189 3.0505 -0.5240 32 1 7.6098 3.6342 1.1321 33 1 7.9040 1.9264 0.7260 34 1 2.0601 -2.0531 1.7914 35 1 3.7381 -2.2488 1.2308 36 1 5.4178 -3.1449 2.6712 37 1 5.9584 -4.4126 4.7090 38 1 4.2887 -4.6684 6.4979 39 1 2.0616 -3.6600 6.2636 40 1 -0.5969 -4.3445 5.8192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776960159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:23 Heat of formation + Delta-G solvation = 70.544702 kcal Electronic energy + Delta-G solvation = -22777.948197 eV Core-core repulsion = 19524.704152 eV Total energy + Delta-G solvation = -3253.244045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13554 -39.25924 -37.26035 -35.50882 -35.22088 -33.59801 -33.44120 -31.37738 -30.80115 -28.66474 -28.10568 -27.09556 -26.00100 -22.83625 -22.03612 -20.64299 -19.29918 -18.98116 -18.20841 -17.60870 -17.52674 -17.00608 -16.35478 -16.11594 -15.48236 -15.33523 -14.89034 -14.63678 -14.55395 -14.48862 -14.38421 -14.27417 -14.16051 -13.71732 -13.44096 -13.37529 -12.92326 -12.77591 -12.73606 -12.49848 -12.12966 -11.60373 -11.35505 -11.23841 -11.14419 -11.07746 -11.03224 -10.66270 -10.61997 -10.09617 -9.23389 -9.17456 -8.60048 -6.30030 0.95885 1.09300 1.28219 1.33502 1.44034 1.52786 1.63783 1.72596 1.90629 1.94586 2.19012 2.57534 2.78302 3.31733 3.55171 3.66323 3.95666 4.20762 4.24118 4.34896 4.39434 4.52390 4.55142 4.65030 4.69743 4.76170 4.77328 4.80383 4.83719 5.03582 5.05900 5.09106 5.18604 5.35953 5.45244 5.53764 5.75920 6.02012 6.14822 6.20343 6.29652 6.41447 6.66118 6.70312 6.72746 6.98700 7.10153 7.24128 8.36264 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.005627 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.192704 B = 4975.037459 C = 6421.117282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.237 4.237 3 C 0.218 3.782 4 N -0.611 5.611 5 C 0.229 3.771 6 C -0.237 4.237 7 C -0.178 4.178 8 C -0.043 4.043 9 C 0.522 3.478 10 O -0.564 6.564 11 C -0.064 4.064 12 C -0.191 4.191 13 C -0.091 4.091 14 C -0.242 4.242 15 C -0.116 4.116 16 C -0.193 4.193 17 C 0.097 3.903 18 C -0.481 4.481 19 H 0.066 0.934 20 C 0.039 3.961 21 N -0.825 5.825 22 Si 0.966 3.034 23 H -0.250 1.250 24 H -0.265 1.265 25 H -0.272 1.272 26 H 0.238 0.762 27 H 0.131 0.869 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 9.563 -13.703 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.238 4.238 3 C 0.097 3.903 4 N -0.344 5.344 5 C 0.107 3.893 6 C -0.238 4.238 7 C -0.179 4.179 8 C -0.098 4.098 9 C 0.313 3.687 10 O -0.441 6.441 11 C -0.104 4.104 12 C -0.193 4.193 13 C -0.109 4.109 14 C -0.261 4.261 15 C -0.135 4.135 16 C -0.212 4.212 17 C 0.095 3.905 18 C -0.511 4.511 19 H 0.084 0.916 20 C -0.176 4.176 21 N -0.451 5.451 22 Si 0.787 3.213 23 H -0.174 1.174 24 H -0.189 1.189 25 H -0.197 1.197 26 H 0.254 0.746 27 H 0.149 0.851 28 H 0.135 0.865 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.821 9.564 -13.003 16.588 hybrid contribution -1.057 0.141 0.709 1.281 sum 2.764 9.706 -12.294 15.905 Atomic orbital electron populations 1.25685 0.96916 0.99721 0.97569 1.23909 0.95633 1.01680 1.02568 1.18702 0.83288 1.03793 0.84498 1.48109 1.66127 1.06466 1.13718 1.18212 0.87372 0.81354 1.02329 1.23122 0.96012 1.02949 1.01736 1.23466 0.95310 0.98430 1.00698 1.19125 0.84245 1.03026 1.03404 1.21287 0.75188 0.89249 0.83008 1.90661 1.46116 1.81079 1.26262 1.20287 1.03622 0.89091 0.97364 1.19542 0.96294 1.06869 0.96590 1.20728 0.95189 0.97524 0.97483 1.20710 0.99671 1.08867 0.96810 1.20956 0.94114 0.99859 0.98535 1.21305 0.96154 1.04928 0.98861 1.17713 0.92810 0.89838 0.90121 1.19543 0.92885 1.12230 1.26421 0.91554 1.26625 1.03429 0.95000 0.92547 1.69869 1.32998 1.14245 1.28005 0.85491 0.76906 0.78829 0.80038 1.17388 1.18897 1.19733 0.74560 0.85149 0.86489 0.85520 0.90119 0.87935 0.88750 0.89461 0.88902 0.87042 0.86658 0.86588 0.87568 0.88452 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 19.25 74.32 1.43 -2.97 16 2 C -0.24 -6.06 13.52 31.12 0.42 -5.64 16 3 C 0.22 4.97 5.69 84.57 0.48 5.45 16 4 N -0.61 -19.02 2.39 -842.96 -2.02 -21.03 16 5 C 0.23 6.55 5.88 84.58 0.50 7.05 16 6 C -0.24 -6.86 13.68 31.12 0.43 -6.43 16 7 C -0.18 -4.56 14.13 31.12 0.44 -4.12 16 8 C -0.04 -0.66 10.32 70.18 0.72 0.06 16 9 C 0.52 21.43 7.27 87.66 0.64 22.06 16 10 O -0.56 -28.78 15.61 -3.04 -0.05 -28.83 16 11 C -0.06 -2.59 3.73 29.10 0.11 -2.49 16 12 C -0.19 -9.51 4.43 -19.40 -0.09 -9.60 16 13 C -0.09 -4.22 9.66 22.22 0.21 -4.01 16 14 C -0.24 -11.23 10.05 22.46 0.23 -11.00 16 15 C -0.12 -5.85 10.02 22.22 0.22 -5.62 16 16 C -0.19 -10.91 8.69 22.73 0.20 -10.71 16 17 C 0.10 5.49 5.56 -21.29 -0.12 5.37 16 18 C -0.48 -26.72 8.14 23.46 0.19 -26.53 16 19 H 0.07 3.64 6.67 -2.91 -0.02 3.62 16 20 C 0.04 2.01 5.16 85.25 0.44 2.45 16 21 N -0.82 -44.41 10.96 21.82 0.24 -44.17 16 22 Si 0.97 39.75 29.59 68.60 2.03 41.78 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H 0.24 4.25 7.80 -4.41 -0.03 4.21 16 27 H 0.13 2.10 8.07 -2.39 -0.02 2.09 16 28 H 0.12 2.37 6.44 -2.39 -0.02 2.36 16 29 H 0.13 2.70 8.07 -2.39 -0.02 2.68 16 30 H 0.08 2.71 7.42 -2.38 -0.02 2.69 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.09 3.84 6.89 -2.39 -0.02 3.82 16 35 H 0.11 3.58 7.31 -2.39 -0.02 3.56 16 36 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 39 H 0.10 5.74 6.20 -2.92 -0.02 5.72 16 40 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 Total: -1.00 -74.47 356.86 7.70 -66.76 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 1.05 Total: 32.15 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 6.45 Total: -46.66 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -1.78 Total: -65.20 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.05 Total: -28.83 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -74.47 7.70 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776960159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.307 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds