Wall clock time and date at job start Tue Mar 31 2020 08:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47065 * 2 1 4 4 H 1.09003 * 109.47190 * 304.99899 * 3 2 1 5 5 C 1.52996 * 109.47070 * 184.99847 * 3 2 1 6 6 O 1.42901 * 109.47016 * 175.00303 * 5 3 2 7 7 C 1.50704 * 109.47030 * 64.99773 * 3 2 1 8 8 O 1.21287 * 119.99841 * 54.42614 * 7 3 2 9 9 N 1.34768 * 119.99957 * 234.42332 * 7 3 2 10 10 C 1.46501 * 120.00455 * 6.02475 * 9 7 3 11 11 C 1.50700 * 109.46829 * 84.91686 * 10 9 7 12 12 H 1.08000 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99665 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00069 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99866 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47176 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47589 * 120.00082 * 15 13 11 18 18 H 1.48505 * 109.46770 * 240.00269 * 15 13 11 19 19 C 1.40035 * 120.00170 * 186.02492 * 9 7 3 20 20 C 1.38854 * 120.04241 * 7.71771 * 19 9 7 21 21 C 1.38108 * 119.95832 * 179.76835 * 20 19 9 22 22 C 1.38484 * 120.03843 * 0.51198 * 21 20 19 23 23 F 1.35100 * 119.95302 * 179.72190 * 22 21 20 24 24 C 1.38467 * 120.09282 * 359.74449 * 22 21 20 25 25 C 1.38116 * 120.04676 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46847 * 60.00055 * 1 2 3 28 28 H 1.09001 * 109.47085 * 300.00003 * 1 2 3 29 29 H 1.08997 * 109.46847 * 119.99945 * 2 1 3 30 30 H 1.09001 * 109.47085 * 239.99997 * 2 1 3 31 31 H 1.08997 * 109.47311 * 294.99640 * 5 3 2 32 32 H 1.09001 * 109.47313 * 55.00281 * 5 3 2 33 33 H 0.96707 * 114.00255 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47628 * 204.91999 * 10 9 7 35 35 H 1.08996 * 109.46603 * 324.92365 * 10 9 7 36 36 H 0.97006 * 119.99598 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.02148 * 0.02562 * 20 19 9 38 38 H 1.07995 * 119.98527 * 180.23383 * 21 20 19 39 39 H 1.08000 * 119.97894 * 179.97438 * 24 22 21 40 40 H 1.08003 * 120.02326 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 4.0314 2.7899 -0.2427 7 6 1.6412 2.1163 1.2877 8 8 1.9376 1.6148 2.3516 9 7 0.9554 3.2760 1.2571 10 6 0.4828 3.8141 -0.0208 11 6 -0.8419 3.1867 -0.3709 12 1 -1.2874 2.4601 0.2925 13 6 -1.4852 3.5403 -1.5381 14 7 -0.9425 4.4247 -2.3461 15 14 -3.1276 2.7631 -1.9717 16 1 -3.5190 1.8058 -0.9059 17 1 -4.1611 3.8229 -2.0896 18 1 -3.0081 2.0422 -3.2645 19 6 0.6945 3.9668 2.4470 20 6 1.2752 3.5467 3.6363 21 6 1.0204 4.2322 4.8079 22 6 0.1781 5.3313 4.7989 23 9 -0.0743 5.9972 5.9470 24 6 -0.4061 5.7486 3.6149 25 6 -0.1494 5.0694 2.4401 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.0029 0.9837 0.7597 32 1 3.8571 0.8801 -1.0113 33 1 4.9917 2.8673 -0.3267 34 1 0.3626 4.8944 0.0618 35 1 1.2094 3.5880 -0.8012 36 1 -1.3953 4.6737 -3.1670 37 1 1.9289 2.6871 3.6444 38 1 1.4748 3.9081 5.7325 39 1 -1.0631 6.6058 3.6101 40 1 -0.6056 5.3949 1.5169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779770037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:54 Heat of formation + Delta-G solvation = -100.596626 kcal Electronic energy + Delta-G solvation = -24766.006275 eV Core-core repulsion = 21074.571761 eV Total energy + Delta-G solvation = -3691.434514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.41312 -40.41530 -38.10129 -36.53421 -35.21367 -34.14296 -32.67870 -30.62083 -29.47178 -28.60322 -27.18271 -23.86445 -23.54195 -22.60965 -22.14536 -20.87948 -18.54679 -17.37386 -17.18729 -17.08795 -16.74889 -16.24602 -15.38640 -15.14311 -14.85923 -14.67491 -14.16630 -14.02782 -13.75636 -13.63283 -13.11646 -12.98633 -12.60695 -12.40697 -12.33184 -12.11021 -11.87873 -11.68137 -11.54821 -11.07631 -10.99755 -10.79734 -10.69232 -10.54237 -10.34478 -10.20792 -10.00098 -9.81656 -9.09627 -8.81739 -8.60532 -8.58753 -7.15703 -6.27020 -4.35205 1.61278 1.76218 3.15316 3.16743 3.25895 3.30036 3.61056 4.21753 4.29168 4.31881 4.79880 4.93489 5.06679 5.26993 5.30257 5.30884 5.42067 5.56902 5.61371 5.68685 5.82674 5.86027 5.92104 6.07724 6.15397 6.26585 6.34626 6.40733 6.57327 6.63236 6.74755 6.80823 6.81899 6.88946 7.14423 7.20990 7.63647 7.71159 7.77266 7.90383 8.07357 8.66694 8.78811 9.32102 10.79167 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.006982 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.887138 B = 4009.326815 C = 5520.487326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.115 4.115 4 H 0.123 0.877 5 C 0.089 3.911 6 O -0.567 6.567 7 C 0.541 3.459 8 O -0.550 6.550 9 N -0.529 5.529 10 C 0.227 3.773 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.892 3.108 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.167 3.833 20 C -0.149 4.149 21 C -0.136 4.136 22 C 0.047 3.953 23 F -0.153 7.153 24 C -0.133 4.133 25 C -0.122 4.122 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.376 0.624 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.266 0.734 37 H 0.180 0.820 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -3.723 4.119 8.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C -0.136 4.136 4 H 0.141 0.859 5 C 0.011 3.989 6 O -0.371 6.371 7 C 0.333 3.667 8 O -0.431 6.431 9 N -0.246 5.246 10 C 0.108 3.892 11 C -0.576 4.576 12 H 0.085 0.915 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.070 3.930 20 C -0.169 4.169 21 C -0.156 4.156 22 C 0.027 3.973 23 F -0.132 7.132 24 C -0.152 4.152 25 C -0.142 4.142 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.222 0.778 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.196 0.804 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.995 -3.772 4.454 8.367 hybrid contribution -0.560 -0.165 -0.298 0.656 sum 5.435 -3.937 4.156 7.894 Atomic orbital electron populations 1.21844 0.94388 1.00833 1.03865 1.21302 0.97304 0.93039 1.02117 1.21508 0.95170 0.98467 0.98439 0.85904 1.22090 0.93178 0.83707 0.99909 1.86594 1.26882 1.26791 1.96876 1.20403 0.76019 0.79673 0.90648 1.90285 1.56771 1.64584 1.31501 1.46032 1.49724 1.20798 1.08060 1.19777 0.95626 0.95896 0.77897 1.21468 1.04519 1.25411 1.06228 0.91534 1.24889 0.97820 0.94856 0.95898 1.69935 1.38859 1.31422 1.12234 0.86519 0.83560 0.79435 0.78555 1.19443 1.20786 1.20724 1.18133 0.95398 0.92841 0.86639 1.22372 1.01743 1.02776 0.89982 1.21014 0.99759 0.95351 0.99473 1.17687 1.02560 0.95127 0.81893 1.91418 1.93412 1.80007 1.48386 1.20849 1.01703 1.01527 0.91120 1.21000 0.98542 0.95690 0.98965 0.93400 0.90759 0.92548 0.91479 0.91326 0.93138 0.92792 0.77790 0.93637 0.92918 0.92419 0.80359 0.85488 0.85164 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.11 37.16 0.34 -2.23 16 2 C -0.10 -1.52 5.33 -26.73 -0.14 -1.66 16 3 C -0.11 -2.00 2.10 -91.77 -0.19 -2.19 16 4 H 0.12 2.41 5.37 -51.93 -0.28 2.13 16 5 C 0.09 1.28 6.40 37.16 0.24 1.52 16 6 O -0.57 -8.58 13.41 -35.23 -0.47 -9.05 16 7 C 0.54 10.87 5.07 -10.99 -0.06 10.82 16 8 O -0.55 -11.46 13.11 5.55 0.07 -11.39 16 9 N -0.53 -11.23 2.70 -114.72 -0.31 -11.54 16 10 C 0.23 5.20 4.22 -5.19 -0.02 5.17 16 11 C -0.54 -13.05 8.37 -34.44 -0.29 -13.34 16 12 H 0.07 1.66 6.95 -52.49 -0.36 1.30 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.23 13.29 55.43 0.74 -22.50 16 15 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.17 3.42 6.49 -83.65 -0.54 2.88 16 20 C -0.15 -2.86 8.97 -39.40 -0.35 -3.21 16 21 C -0.14 -2.34 10.02 -39.54 -0.40 -2.74 16 22 C 0.05 0.82 7.30 -39.41 -0.29 0.53 16 23 F -0.15 -2.57 17.26 2.25 0.04 -2.53 16 24 C -0.13 -2.29 10.02 -39.54 -0.40 -2.68 16 25 C -0.12 -2.35 9.15 -39.40 -0.36 -2.71 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.36 7.59 -51.93 -0.39 0.97 16 28 H 0.06 1.08 6.84 -51.93 -0.36 0.73 16 29 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.38 3.62 9.12 45.56 0.42 4.04 16 34 H 0.05 1.10 6.28 -51.93 -0.33 0.77 16 35 H 0.05 1.27 6.06 -51.93 -0.31 0.95 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.18 3.55 4.73 -55.13 -0.26 3.29 16 38 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.15 2.97 6.28 -52.48 -0.33 2.64 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -28.08 332.65 -6.79 -34.87 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.29 Total: 10.64 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.56 Total: -8.20 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.43 Total: -34.04 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.40 Total: -20.45 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.08 -6.79 -34.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779770037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.726 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds