Wall clock time and date at job start Tue Mar 31 2020 08:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47065 * 2 1 4 4 H 1.09003 * 109.47190 * 304.99899 * 3 2 1 5 5 C 1.52996 * 109.47070 * 184.99847 * 3 2 1 6 6 O 1.42901 * 109.47016 * 175.00303 * 5 3 2 7 7 C 1.50704 * 109.47030 * 64.99773 * 3 2 1 8 8 O 1.21287 * 119.99841 * 54.42614 * 7 3 2 9 9 N 1.34768 * 119.99957 * 234.42332 * 7 3 2 10 10 C 1.46501 * 120.00455 * 6.02475 * 9 7 3 11 11 C 1.50700 * 109.46829 * 84.91686 * 10 9 7 12 12 H 1.08000 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99665 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00069 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99866 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47176 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47589 * 120.00082 * 15 13 11 18 18 H 1.48505 * 109.46770 * 240.00269 * 15 13 11 19 19 C 1.40035 * 120.00170 * 186.02492 * 9 7 3 20 20 C 1.38854 * 120.04241 * 7.71771 * 19 9 7 21 21 C 1.38108 * 119.95832 * 179.76835 * 20 19 9 22 22 C 1.38484 * 120.03843 * 0.51198 * 21 20 19 23 23 F 1.35100 * 119.95302 * 179.72190 * 22 21 20 24 24 C 1.38467 * 120.09282 * 359.74449 * 22 21 20 25 25 C 1.38116 * 120.04676 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46847 * 60.00055 * 1 2 3 28 28 H 1.09001 * 109.47085 * 300.00003 * 1 2 3 29 29 H 1.08997 * 109.46847 * 119.99945 * 2 1 3 30 30 H 1.09001 * 109.47085 * 239.99997 * 2 1 3 31 31 H 1.08997 * 109.47311 * 294.99640 * 5 3 2 32 32 H 1.09001 * 109.47313 * 55.00281 * 5 3 2 33 33 H 0.96707 * 114.00255 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47628 * 204.91999 * 10 9 7 35 35 H 1.08996 * 109.46603 * 324.92365 * 10 9 7 36 36 H 0.97006 * 119.99598 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.02148 * 0.02562 * 20 19 9 38 38 H 1.07995 * 119.98527 * 180.23383 * 21 20 19 39 39 H 1.08000 * 119.97894 * 179.97438 * 24 22 21 40 40 H 1.08003 * 120.02326 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 4.0314 2.7899 -0.2427 7 6 1.6412 2.1163 1.2877 8 8 1.9376 1.6148 2.3516 9 7 0.9554 3.2760 1.2571 10 6 0.4828 3.8141 -0.0208 11 6 -0.8419 3.1867 -0.3709 12 1 -1.2874 2.4601 0.2925 13 6 -1.4852 3.5403 -1.5381 14 7 -0.9425 4.4247 -2.3461 15 14 -3.1276 2.7631 -1.9717 16 1 -3.5190 1.8058 -0.9059 17 1 -4.1611 3.8229 -2.0896 18 1 -3.0081 2.0422 -3.2645 19 6 0.6945 3.9668 2.4470 20 6 1.2752 3.5467 3.6363 21 6 1.0204 4.2322 4.8079 22 6 0.1781 5.3313 4.7989 23 9 -0.0743 5.9972 5.9470 24 6 -0.4061 5.7486 3.6149 25 6 -0.1494 5.0694 2.4401 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.0029 0.9837 0.7597 32 1 3.8571 0.8801 -1.0113 33 1 4.9917 2.8673 -0.3267 34 1 0.3626 4.8944 0.0618 35 1 1.2094 3.5880 -0.8012 36 1 -1.3953 4.6737 -3.1670 37 1 1.9289 2.6871 3.6444 38 1 1.4748 3.9081 5.7325 39 1 -1.0631 6.6058 3.6101 40 1 -0.6056 5.3949 1.5169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779770037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:53 Heat of formation + Delta-G solvation = -117.509133 kcal Electronic energy + Delta-G solvation = -24766.739656 eV Core-core repulsion = 21074.571761 eV Total energy + Delta-G solvation = -3692.167896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.78859 -41.95152 -39.52676 -37.76945 -36.88070 -35.44133 -34.55832 -32.08319 -30.92819 -30.04679 -28.91180 -25.45566 -25.05074 -23.99708 -23.63613 -22.30918 -20.02620 -18.83314 -18.71145 -18.63280 -18.20517 -17.81851 -16.79223 -16.54131 -16.43596 -16.30856 -15.61933 -15.44661 -15.14318 -14.90618 -14.58574 -14.48333 -14.16438 -13.96732 -13.81991 -13.63772 -13.36175 -13.29758 -12.93798 -12.83854 -12.64678 -12.33733 -12.07007 -11.94905 -11.92664 -11.82083 -11.51091 -10.97552 -10.78433 -10.64172 -10.24183 -10.04496 -8.74470 -8.19269 -6.33941 0.13502 0.30791 1.38616 1.43450 1.52434 1.65806 2.06101 2.40794 2.76477 3.10500 3.22769 3.36809 3.50644 3.90554 3.96028 4.06392 4.19878 4.29910 4.35048 4.41107 4.44127 4.50650 4.55525 4.68097 4.87127 4.89840 4.97313 5.05024 5.06583 5.14620 5.23597 5.26517 5.32867 5.38131 5.50181 5.65469 5.73309 5.98571 6.13765 6.42277 6.77464 6.92208 7.16558 7.36580 8.85438 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.006982 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.887138 B = 4009.326815 C = 5520.487326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.117 4.117 4 H 0.096 0.904 5 C 0.093 3.907 6 O -0.594 6.594 7 C 0.535 3.465 8 O -0.561 6.561 9 N -0.538 5.538 10 C 0.246 3.754 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.031 3.969 14 N -0.916 5.916 15 Si 0.946 3.054 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.274 1.274 19 C 0.139 3.861 20 C -0.157 4.157 21 C -0.127 4.127 22 C 0.050 3.950 23 F -0.146 7.146 24 C -0.124 4.124 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.174 0.826 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -4.669 4.743 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.114 0.886 5 C 0.015 3.985 6 O -0.403 6.403 7 C 0.327 3.673 8 O -0.444 6.444 9 N -0.255 5.255 10 C 0.126 3.874 11 C -0.570 4.570 12 H 0.074 0.926 13 C -0.170 4.170 14 N -0.555 5.555 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.043 3.957 20 C -0.176 4.176 21 C -0.146 4.146 22 C 0.030 3.970 23 F -0.125 7.125 24 C -0.143 4.143 25 C -0.155 4.155 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.248 0.752 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.190 0.810 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.313 -4.721 5.093 9.385 hybrid contribution -0.626 0.175 -0.397 0.762 sum 5.687 -4.546 4.696 8.663 Atomic orbital electron populations 1.21787 0.95896 1.01661 1.01232 1.21333 0.95865 0.91916 1.04053 1.21612 0.97569 0.99046 0.95600 0.88624 1.22124 0.90765 0.83789 1.01816 1.86542 1.29226 1.27535 1.97003 1.20962 0.75390 0.79243 0.91670 1.90266 1.57248 1.64723 1.32114 1.46018 1.50355 1.21482 1.07678 1.19362 0.94783 0.94650 0.78563 1.21489 1.04867 1.24760 1.05883 0.92621 1.25491 1.00459 0.95230 0.95851 1.70018 1.40150 1.32615 1.12704 0.85676 0.80151 0.78590 0.78383 1.19493 1.20790 1.19961 1.18473 0.96573 0.93656 0.86980 1.22321 1.02043 1.03067 0.90212 1.21262 0.98933 0.94583 0.99788 1.17708 1.02224 0.95041 0.82022 1.91442 1.93311 1.79815 1.47886 1.21058 1.01319 1.01643 0.90322 1.20934 0.99128 0.96149 0.99298 0.90823 0.92750 0.95685 0.90769 0.87942 0.92352 0.89440 0.75184 0.95438 0.94252 0.92279 0.81002 0.82595 0.82679 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.11 71.98 0.66 -4.29 16 2 C -0.09 -2.72 5.33 30.59 0.16 -2.55 16 3 C -0.12 -4.04 2.10 -11.54 -0.02 -4.06 16 4 H 0.10 3.84 5.37 -2.39 -0.01 3.83 16 5 C 0.09 2.51 6.40 71.98 0.46 2.97 16 6 O -0.59 -17.58 13.41 -148.98 -2.00 -19.58 16 7 C 0.53 21.80 5.07 87.66 0.44 22.24 16 8 O -0.56 -23.48 13.11 -3.05 -0.04 -23.52 16 9 N -0.54 -23.58 2.70 -635.24 -1.71 -25.30 16 10 C 0.25 11.77 4.22 85.63 0.36 12.13 16 11 C -0.53 -26.58 8.37 25.60 0.21 -26.37 16 12 H 0.06 2.87 6.95 -2.91 -0.02 2.85 16 13 C 0.03 1.55 5.46 84.66 0.46 2.01 16 14 N -0.92 -48.89 13.29 21.45 0.28 -48.60 16 15 Si 0.95 40.71 29.54 68.60 2.03 42.74 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 19 C 0.14 5.84 6.49 38.12 0.25 6.09 16 20 C -0.16 -5.97 8.97 22.39 0.20 -5.77 16 21 C -0.13 -4.12 10.02 22.30 0.22 -3.90 16 22 C 0.05 1.64 7.30 22.38 0.16 1.80 16 23 F -0.15 -4.49 17.26 44.97 0.78 -3.71 16 24 C -0.12 -4.16 10.02 22.30 0.22 -3.93 16 25 C -0.13 -5.29 9.15 22.39 0.20 -5.09 16 26 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 28 H 0.02 0.96 6.84 -2.39 -0.02 0.94 16 29 H 0.07 2.06 7.87 -2.39 -0.02 2.04 16 30 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.40 7.16 9.12 -74.05 -0.68 6.48 16 34 H 0.03 1.40 6.28 -2.39 -0.01 1.39 16 35 H 0.04 1.99 6.06 -2.39 -0.01 1.98 16 36 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 37 H 0.17 6.84 4.73 -44.79 -0.21 6.63 16 38 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.13 5.57 6.28 -2.91 -0.02 5.56 16 Total: -1.00 -60.84 332.65 3.54 -57.30 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.20 Total: 29.39 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.00 Total: -8.72 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.43 Total: -73.90 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -2.04 Total: -43.10 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.78 Total: -3.71 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -60.84 3.54 -57.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779770037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.211 kcal (2) G-P(sol) polarization free energy of solvation -60.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds