Wall clock time and date at job start Tue Mar 31 2020 08:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47446 * 2 1 4 4 N 1.46497 * 109.47181 * 120.00250 * 2 1 3 5 5 C 1.46506 * 120.00118 * 299.99993 * 4 2 1 6 6 C 1.50705 * 109.46875 * 270.00231 * 5 4 2 7 7 H 1.08000 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99832 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00175 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47249 * 90.00002 * 10 8 6 12 12 H 1.48507 * 109.46785 * 209.99435 * 10 8 6 13 13 H 1.48496 * 109.47098 * 329.99419 * 10 8 6 14 14 C 1.34779 * 120.00075 * 119.99858 * 4 2 1 15 15 O 1.21286 * 119.99788 * 180.02562 * 14 4 2 16 16 C 1.50693 * 120.00046 * 359.97438 * 14 4 2 17 17 C 1.53003 * 109.47069 * 180.02562 * 16 14 4 18 18 C 1.53005 * 109.46776 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.09003 * 109.47089 * 299.99924 * 1 2 3 25 25 H 1.08999 * 109.47108 * 59.99791 * 1 2 3 26 26 H 1.08992 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47089 * 240.00076 * 2 1 3 28 28 H 1.08999 * 109.47354 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46786 * 300.00582 * 3 2 1 30 30 H 1.09003 * 109.46914 * 59.99969 * 3 2 1 31 31 H 1.08994 * 109.46666 * 29.99550 * 5 4 2 32 32 H 1.08993 * 109.47356 * 150.00273 * 5 4 2 33 33 H 0.97002 * 120.00154 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47250 * 59.99836 * 16 14 4 35 35 H 1.09007 * 109.47222 * 300.00088 * 16 14 4 36 36 H 1.08994 * 109.46921 * 60.00192 * 17 16 14 37 37 H 1.08994 * 109.47207 * 299.99884 * 17 16 14 38 38 H 1.08994 * 109.47301 * 60.00348 * 18 17 16 39 39 H 1.09003 * 109.46866 * 299.99784 * 18 17 16 40 40 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 41 41 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5268 6 6 2.7032 0.8018 2.9830 7 1 3.5431 1.0357 2.3457 8 6 2.5817 1.4099 4.2144 9 7 1.5592 1.1247 4.9907 10 14 3.8697 2.6389 4.7802 11 1 3.4770 4.0033 4.3448 12 1 3.9719 2.6023 6.2613 13 1 5.1839 2.2882 4.1845 14 6 2.7932 -1.7865 1.0724 15 8 3.1970 -2.3585 2.0627 16 6 3.1567 -2.3016 -0.2963 17 6 4.0359 -3.5459 -0.1559 18 6 4.4055 -4.0686 -1.5456 19 6 5.2710 -5.2945 -1.4074 20 6 6.6518 -5.2271 -1.3386 21 6 7.2667 -6.4047 -1.2180 22 16 6.0705 -7.6935 -1.1787 23 6 4.7645 -6.5268 -1.3424 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.6905 0.2973 2.4843 32 1 1.6238 -1.0227 3.2291 33 1 1.4739 1.5523 5.8572 34 1 3.7015 -1.5310 -0.8417 35 1 2.2481 -2.5587 -0.8409 36 1 3.4907 -4.3164 0.3893 37 1 4.9444 -3.2893 0.3888 38 1 4.9509 -3.2980 -2.0904 39 1 3.4971 -4.3251 -2.0907 40 1 7.1905 -4.2919 -1.3793 41 1 8.3354 -6.5449 -1.1500 42 1 3.7130 -6.7705 -1.3800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783418565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:51 Heat of formation + Delta-G solvation = -23.049420 kcal Electronic energy + Delta-G solvation = -21366.504936 eV Core-core repulsion = 18244.646297 eV Total energy + Delta-G solvation = -3121.858639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.28349 -38.43899 -35.97918 -33.98169 -32.76178 -30.78349 -30.15080 -28.11937 -26.78898 -26.48962 -23.81751 -22.66292 -21.54558 -20.92006 -18.83494 -17.96078 -17.59935 -16.51723 -16.43016 -15.58118 -15.24969 -14.91373 -14.21725 -13.86451 -13.62716 -13.44562 -13.24626 -13.01776 -12.92006 -12.48683 -12.35788 -12.22895 -11.78525 -11.66302 -11.57350 -11.40946 -11.33714 -11.09390 -10.91168 -10.83475 -10.74449 -10.51316 -10.49191 -10.32759 -9.97351 -9.50444 -8.90662 -8.79289 -8.45077 -8.38897 -7.58642 -6.00183 -4.03278 0.91099 1.56621 1.88200 2.61496 3.31310 3.38393 3.41907 3.52702 3.98801 4.47638 4.75357 4.87714 5.03869 5.11356 5.21167 5.29357 5.33826 5.43415 5.47037 5.55470 5.62348 5.67830 5.73609 5.77328 5.83171 5.94332 6.03649 6.18703 6.20765 6.30068 6.34903 6.38813 6.48756 6.53843 6.62448 6.98278 7.17072 7.52108 7.63563 7.97196 8.29941 8.52478 8.96350 9.18709 9.60874 11.07959 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.003200 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.369673 B = 8749.110500 C = 9519.324649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.595 5.595 5 C 0.246 3.754 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.502 3.498 15 O -0.543 6.543 16 C -0.140 4.140 17 C -0.096 4.096 18 C -0.061 4.061 19 C -0.094 4.094 20 C -0.127 4.127 21 C -0.213 4.213 22 S 0.077 5.923 23 C -0.211 4.211 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -10.794 -17.417 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.127 3.873 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.289 3.711 15 O -0.421 6.421 16 C -0.181 4.181 17 C -0.134 4.134 18 C -0.101 4.101 19 C -0.106 4.106 20 C -0.158 4.158 21 C -0.348 4.348 22 S 0.341 5.659 23 C -0.346 4.346 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.601 -12.647 -16.560 21.339 hybrid contribution 0.620 2.333 0.312 2.434 sum 5.221 -10.314 -16.249 19.941 Atomic orbital electron populations 1.22159 0.95744 1.01718 1.02384 1.20981 0.93983 0.94078 0.88084 1.22143 1.01318 0.95817 1.02232 1.48348 1.49303 1.26571 1.08503 1.19209 0.95789 0.94909 0.77443 1.21450 1.08862 1.23288 1.02029 0.92429 1.24930 0.95759 0.97168 0.96376 1.69931 1.29598 1.43346 1.10677 0.86555 0.82070 0.81239 0.77912 1.20724 1.21181 1.19956 1.20386 0.79096 0.80883 0.90716 1.90668 1.53357 1.58194 1.39895 1.21717 1.00981 0.98805 0.96569 1.21287 1.00309 0.96482 0.95331 1.20403 0.98106 0.93559 0.98071 1.18996 0.94005 0.95223 1.02362 1.20164 0.93787 0.98746 1.03102 1.25569 1.02965 0.95723 1.10551 1.84207 0.97443 1.11306 1.72978 1.25456 1.02604 0.95464 1.11079 0.91355 0.92351 0.92971 0.90672 0.92791 0.93347 0.90118 0.94925 0.94190 0.92843 0.89620 0.89802 0.91218 0.91046 0.90859 0.91039 0.84159 0.82014 0.81939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.17 37.16 0.34 -2.02 16 2 C 0.13 2.14 3.17 -67.93 -0.22 1.93 16 3 C -0.16 -2.57 8.47 37.16 0.31 -2.26 16 4 N -0.60 -12.45 2.39 -167.47 -0.40 -12.85 16 5 C 0.25 6.37 4.60 -5.19 -0.02 6.35 16 6 C -0.52 -14.46 7.83 -34.44 -0.27 -14.73 16 7 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.50 10.38 7.67 -10.99 -0.08 10.30 16 15 O -0.54 -13.80 15.56 5.55 0.09 -13.71 16 16 C -0.14 -2.00 4.01 -27.88 -0.11 -2.11 16 17 C -0.10 -1.31 4.49 -26.73 -0.12 -1.43 16 18 C -0.06 -0.64 5.47 -27.88 -0.15 -0.79 16 19 C -0.09 -1.04 5.06 -106.25 -0.54 -1.57 16 20 C -0.13 -1.35 9.98 -41.21 -0.41 -1.77 16 21 C -0.21 -2.08 11.23 29.04 0.33 -1.76 16 22 S 0.08 0.76 23.34 -107.50 -2.51 -1.75 16 23 C -0.21 -2.22 10.98 29.04 0.32 -1.90 16 24 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.98 5.77 -51.93 -0.30 0.68 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 31 H 0.03 0.86 6.43 -51.93 -0.33 0.52 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 35 H 0.08 1.00 7.79 -51.92 -0.40 0.59 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -32.83 356.91 -9.16 -41.99 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.71 Total: 0.14 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.72 Total: -10.17 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.34 Total: -38.78 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.83 -9.16 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783418565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.943 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds