Wall clock time and date at job start Tue Mar 31 2020 08:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47446 * 2 1 4 4 N 1.46497 * 109.47181 * 120.00250 * 2 1 3 5 5 C 1.46506 * 120.00118 * 299.99993 * 4 2 1 6 6 C 1.50705 * 109.46875 * 270.00231 * 5 4 2 7 7 H 1.08000 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99832 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00175 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99751 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47249 * 90.00002 * 10 8 6 12 12 H 1.48507 * 109.46785 * 209.99435 * 10 8 6 13 13 H 1.48496 * 109.47098 * 329.99419 * 10 8 6 14 14 C 1.34779 * 120.00075 * 119.99858 * 4 2 1 15 15 O 1.21286 * 119.99788 * 180.02562 * 14 4 2 16 16 C 1.50693 * 120.00046 * 359.97438 * 14 4 2 17 17 C 1.53003 * 109.47069 * 180.02562 * 16 14 4 18 18 C 1.53005 * 109.46776 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.09003 * 109.47089 * 299.99924 * 1 2 3 25 25 H 1.08999 * 109.47108 * 59.99791 * 1 2 3 26 26 H 1.08992 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47089 * 240.00076 * 2 1 3 28 28 H 1.08999 * 109.47354 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46786 * 300.00582 * 3 2 1 30 30 H 1.09003 * 109.46914 * 59.99969 * 3 2 1 31 31 H 1.08994 * 109.46666 * 29.99550 * 5 4 2 32 32 H 1.08993 * 109.47356 * 150.00273 * 5 4 2 33 33 H 0.97002 * 120.00154 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47250 * 59.99836 * 16 14 4 35 35 H 1.09007 * 109.47222 * 300.00088 * 16 14 4 36 36 H 1.08994 * 109.46921 * 60.00192 * 17 16 14 37 37 H 1.08994 * 109.47207 * 299.99884 * 17 16 14 38 38 H 1.08994 * 109.47301 * 60.00348 * 18 17 16 39 39 H 1.09003 * 109.46866 * 299.99784 * 18 17 16 40 40 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 41 41 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5268 6 6 2.7032 0.8018 2.9830 7 1 3.5431 1.0357 2.3457 8 6 2.5817 1.4099 4.2144 9 7 1.5592 1.1247 4.9907 10 14 3.8697 2.6389 4.7802 11 1 3.4770 4.0033 4.3448 12 1 3.9719 2.6023 6.2613 13 1 5.1839 2.2882 4.1845 14 6 2.7932 -1.7865 1.0724 15 8 3.1970 -2.3585 2.0627 16 6 3.1567 -2.3016 -0.2963 17 6 4.0359 -3.5459 -0.1559 18 6 4.4055 -4.0686 -1.5456 19 6 5.2710 -5.2945 -1.4074 20 6 6.6518 -5.2271 -1.3386 21 6 7.2667 -6.4047 -1.2180 22 16 6.0705 -7.6935 -1.1787 23 6 4.7645 -6.5268 -1.3424 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.6905 0.2973 2.4843 32 1 1.6238 -1.0227 3.2291 33 1 1.4739 1.5523 5.8572 34 1 3.7015 -1.5310 -0.8417 35 1 2.2481 -2.5587 -0.8409 36 1 3.4907 -4.3164 0.3893 37 1 4.9444 -3.2893 0.3888 38 1 4.9509 -3.2980 -2.0904 39 1 3.4971 -4.3251 -2.0907 40 1 7.1905 -4.2919 -1.3793 41 1 8.3354 -6.5449 -1.1500 42 1 3.7130 -6.7705 -1.3800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783418565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:50 Heat of formation + Delta-G solvation = -41.785082 kcal Electronic energy + Delta-G solvation = -21367.317375 eV Core-core repulsion = 18244.646297 eV Total energy + Delta-G solvation = -3122.671078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84180 -39.28675 -37.55881 -35.21440 -34.74025 -32.37288 -31.17122 -29.61842 -28.09859 -27.82176 -25.27774 -24.04267 -22.78000 -22.19891 -19.68434 -19.34934 -18.60646 -18.49911 -17.94093 -16.90556 -16.68714 -16.31214 -15.84171 -15.19775 -14.82348 -14.75429 -14.41524 -14.24234 -13.91320 -13.86032 -13.52196 -13.42906 -13.33840 -13.12714 -12.83000 -12.79181 -12.56864 -12.53004 -12.46851 -12.25553 -12.18512 -12.06957 -11.65263 -11.57708 -11.50738 -11.44247 -10.60611 -10.48542 -9.66916 -9.37125 -9.23550 -8.18862 -6.30969 0.14040 0.81843 1.12046 1.35066 1.38157 1.48020 1.81419 1.92420 2.34526 2.50423 3.10528 3.75763 3.90971 4.03397 4.07061 4.21118 4.33163 4.35908 4.47235 4.55486 4.60373 4.71832 4.73553 4.78638 4.89187 4.92768 4.96549 5.06410 5.09260 5.11566 5.15573 5.24645 5.27584 5.43709 5.46860 5.59608 5.61071 5.66722 5.66889 5.93749 6.13126 6.76110 6.90845 7.33369 7.58131 8.88363 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.003200 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.369673 B = 8749.110500 C = 9519.324649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.153 4.153 4 N -0.600 5.600 5 C 0.264 3.736 6 C -0.525 4.525 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.488 3.512 15 O -0.605 6.605 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.050 4.050 19 C -0.110 4.110 20 C -0.145 4.145 21 C -0.217 4.217 22 S 0.080 5.920 23 C -0.222 4.222 24 H 0.034 0.966 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.122 0.878 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.023 0.977 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.182 0.818 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -10.203 -20.566 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.331 5.331 5 C 0.142 3.858 6 C -0.563 4.563 7 H 0.072 0.928 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.278 3.722 15 O -0.487 6.487 16 C -0.164 4.164 17 C -0.127 4.127 18 C -0.090 4.090 19 C -0.122 4.122 20 C -0.175 4.175 21 C -0.352 4.352 22 S 0.343 5.657 23 C -0.358 4.358 24 H 0.053 0.947 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.199 0.801 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.206 -12.041 -19.766 23.723 hybrid contribution 0.405 2.095 1.290 2.494 sum 5.610 -9.946 -18.475 21.719 Atomic orbital electron populations 1.22127 0.94536 1.02198 1.02644 1.21439 0.95036 0.93953 0.87330 1.22089 1.00670 0.96005 1.02300 1.48424 1.49418 1.27131 1.08145 1.18599 0.95133 0.92433 0.79619 1.21681 1.08949 1.23463 1.02257 0.92797 1.25831 0.97874 0.99196 0.96549 1.70058 1.31444 1.44624 1.11108 0.85495 0.79143 0.79377 0.77295 1.18851 1.20946 1.19812 1.21655 0.77740 0.79995 0.92821 1.90635 1.55504 1.59910 1.42643 1.21737 1.02964 0.99374 0.92363 1.21184 0.98653 0.95786 0.97122 1.20328 0.99180 0.93651 0.95814 1.19194 0.94413 0.95676 1.02898 1.20397 0.93993 0.99496 1.03651 1.25892 1.04038 0.95472 1.09786 1.84183 0.97438 1.11325 1.72717 1.25733 1.03484 0.95660 1.10887 0.94691 0.88408 0.92427 0.86056 0.93721 0.89125 0.94131 0.95872 0.99457 0.92666 0.86695 0.86061 0.93414 0.93825 0.89078 0.88903 0.83237 0.80095 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 9.17 71.98 0.66 -3.56 16 2 C 0.12 3.70 3.17 44.99 0.14 3.85 16 3 C -0.15 -4.68 8.47 71.98 0.61 -4.07 16 4 N -0.60 -25.24 2.39 -802.14 -1.91 -27.15 16 5 C 0.26 14.37 4.60 85.63 0.39 14.77 16 6 C -0.52 -30.32 7.83 25.60 0.20 -30.12 16 7 H 0.05 3.08 7.63 -2.91 -0.02 3.06 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 10 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.49 20.24 7.67 87.65 0.67 20.92 16 15 O -0.60 -32.21 15.56 -3.05 -0.05 -32.26 16 16 C -0.12 -3.21 4.01 29.85 0.12 -3.09 16 17 C -0.09 -2.33 4.49 30.60 0.14 -2.19 16 18 C -0.05 -0.89 5.47 29.85 0.16 -0.73 16 19 C -0.11 -2.24 5.06 -20.92 -0.11 -2.35 16 20 C -0.15 -2.88 9.98 21.22 0.21 -2.67 16 21 C -0.22 -3.95 11.23 66.72 0.75 -3.20 16 22 S 0.08 1.48 23.34 -56.49 -1.32 0.16 16 23 C -0.22 -4.39 10.98 66.72 0.73 -3.66 16 24 H 0.03 1.16 6.66 -2.39 -0.02 1.15 16 25 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.12 2.53 5.77 -2.39 -0.01 2.52 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.56 6.92 -2.39 -0.02 1.55 16 31 H 0.02 1.29 6.43 -2.39 -0.02 1.28 16 32 H -0.01 -0.82 7.42 -2.39 -0.02 -0.83 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.11 2.36 7.79 -2.38 -0.02 2.34 16 35 H 0.12 2.28 7.79 -2.38 -0.02 2.26 16 36 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 37 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.09 1.28 8.12 -2.39 -0.02 1.27 16 40 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -77.31 356.91 5.17 -72.14 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.99 Total: 12.00 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.15 Total: -15.44 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.63 Total: -84.31 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal Total: -77.31 5.17 -72.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783418565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.357 kcal (2) G-P(sol) polarization free energy of solvation -77.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds