Wall clock time and date at job start Tue Mar 31 2020 07:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47134 * 2 1 4 4 C 1.52998 * 109.46985 * 120.00311 * 2 1 3 5 5 H 1.09003 * 109.47147 * 305.31350 * 4 2 1 6 6 F 1.39900 * 109.47021 * 185.31872 * 4 2 1 7 7 C 1.50695 * 109.47319 * 65.31523 * 4 2 1 8 8 O 1.21281 * 120.00196 * 66.27382 * 7 4 2 9 9 N 1.34779 * 120.00062 * 246.27427 * 7 4 2 10 10 C 1.46507 * 119.99795 * 180.02562 * 9 7 4 11 11 C 1.50702 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.38308 * 119.92691 * 269.72172 * 11 10 9 13 13 C 1.38099 * 120.06839 * 179.72537 * 12 11 10 14 14 C 1.38882 * 119.92813 * 0.57169 * 13 12 11 15 15 O 1.35752 * 120.07009 * 179.68451 * 14 13 12 16 16 C 1.34826 * 117.00354 * 174.50285 * 15 14 13 17 17 H 1.08006 * 119.99761 * 5.09052 * 16 15 14 18 18 C 1.38649 * 120.00077 * 185.09396 * 16 15 14 19 19 N 1.31557 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47208 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47344 * 119.99752 * 20 18 16 23 23 H 1.48508 * 109.47032 * 239.99943 * 20 18 16 24 24 C 1.38885 * 119.86128 * 359.70026 * 14 13 12 25 25 C 1.38096 * 119.93199 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.46924 * 300.00154 * 1 2 3 27 27 H 1.09004 * 109.47102 * 59.99589 * 1 2 3 28 28 H 1.08998 * 109.47471 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46924 * 239.99846 * 2 1 3 30 30 H 1.08997 * 109.47321 * 185.01907 * 3 2 1 31 31 H 1.08995 * 109.47598 * 305.01987 * 3 2 1 32 32 H 1.09000 * 109.47011 * 65.01952 * 3 2 1 33 33 H 0.96996 * 120.00487 * 359.97438 * 9 7 4 34 34 H 1.08998 * 109.46594 * 299.99722 * 10 9 7 35 35 H 1.08998 * 109.47226 * 59.99816 * 10 9 7 36 36 H 1.08003 * 119.96507 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.03621 * 180.27404 * 13 12 11 38 38 H 0.97003 * 119.99929 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.03149 * 179.97438 * 24 14 13 40 40 H 1.07994 * 119.96691 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6010 -0.2654 2.1367 6 9 3.4336 -0.6164 1.3120 7 6 1.6480 -2.1750 1.1851 8 8 2.1257 -2.8949 0.3340 9 7 0.7666 -2.6751 2.0736 10 6 0.3860 -4.0885 2.0116 11 6 -0.6049 -4.3903 3.1063 12 6 -0.1571 -4.8094 4.3460 13 6 -1.0623 -5.0813 5.3529 14 6 -2.4239 -4.9450 5.1160 15 8 -3.3165 -5.2178 6.1018 16 6 -4.6136 -4.9565 5.8427 17 1 -4.9118 -4.6267 4.8584 18 6 -5.5646 -5.1113 6.8397 19 7 -5.2014 -5.5135 8.0385 20 14 -7.3615 -4.7486 6.4809 21 1 -7.5064 -4.3146 5.0681 22 1 -8.1688 -5.9742 6.7079 23 1 -7.8379 -3.6681 7.3815 24 6 -2.8706 -4.5295 3.8683 25 6 -1.9602 -4.2536 2.8672 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1263 1.4438 -0.0899 31 1 1.6052 1.9816 -0.8415 32 1 1.7520 1.9297 0.9315 33 1 0.3847 -2.0995 2.7546 34 1 -0.0672 -4.3005 1.0432 35 1 1.2722 -4.7095 2.1418 36 1 0.9017 -4.9201 4.5279 37 1 -0.7119 -5.4042 6.3221 38 1 -5.8668 -5.6221 8.7359 39 1 -3.9288 -4.4230 3.6809 40 1 -2.3069 -3.9309 1.8967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784153529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:49 Heat of formation + Delta-G solvation = -105.903754 kcal Electronic energy + Delta-G solvation = -22868.256798 eV Core-core repulsion = 19176.592150 eV Total energy + Delta-G solvation = -3691.664649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.05414 -39.84212 -39.07519 -36.95754 -35.84755 -34.56639 -32.42797 -30.42949 -30.25712 -28.05288 -27.36115 -25.81357 -24.60795 -22.11706 -21.48744 -20.74401 -20.36397 -18.17535 -18.04009 -17.16661 -16.74680 -16.22277 -15.51910 -15.16470 -14.87768 -14.63626 -14.55481 -14.19929 -14.00814 -13.74979 -13.49900 -13.22503 -13.08839 -12.85396 -12.78269 -12.55376 -12.44823 -12.16745 -11.74127 -11.49528 -11.46745 -11.41500 -11.05298 -10.93591 -10.85591 -10.74464 -10.51607 -9.87566 -9.48000 -9.13681 -8.96111 -8.34834 -7.38849 -6.57718 -4.16686 1.97636 2.07107 2.33406 2.99940 3.06156 3.09417 3.12005 3.86229 4.05084 4.27216 4.38857 4.46960 4.54413 4.79278 4.96920 5.09161 5.12038 5.16665 5.17417 5.30482 5.34353 5.46792 5.50227 5.59212 5.70248 5.73048 5.82055 5.89159 5.90701 6.06569 6.28582 6.32307 6.53835 6.74245 6.89738 7.07930 7.20550 7.29713 7.37429 7.65524 7.86906 8.00047 8.87647 9.55308 10.59766 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002836 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.411756 B = 9870.338939 C =10486.771137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.085 3.915 5 H 0.099 0.901 6 F -0.189 7.189 7 C 0.490 3.510 8 O -0.529 6.529 9 N -0.713 5.713 10 C 0.178 3.822 11 C -0.218 4.218 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.161 3.839 15 O -0.172 6.172 16 C -0.394 4.394 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.858 5.858 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.237 4.237 25 C -0.050 4.050 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 10.890 -11.978 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 C -0.204 4.204 4 C 0.045 3.955 5 H 0.117 0.883 6 F -0.170 7.170 7 C 0.273 3.727 8 O -0.405 6.405 9 N -0.364 5.364 10 C 0.056 3.944 11 C -0.219 4.219 12 C -0.072 4.072 13 C -0.214 4.214 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.256 4.256 25 C -0.069 4.069 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.198 10.196 -12.121 18.316 hybrid contribution -1.078 0.373 0.244 1.166 sum 8.120 10.569 -11.877 17.853 Atomic orbital electron populations 1.21848 0.93315 1.02762 1.02978 1.21625 0.97330 0.97288 0.97127 1.21812 1.01853 0.94283 1.02493 1.21655 0.77751 0.94164 1.01886 0.88272 1.92865 1.29623 1.96747 1.97727 1.20915 0.79953 0.89801 0.82016 1.90726 1.53572 1.60325 1.35914 1.46436 1.44386 1.12469 1.33153 1.20044 0.96737 0.80239 0.97403 1.19172 0.93456 1.13663 0.95612 1.20543 0.98114 0.96680 0.91909 1.20223 0.90428 1.10551 1.00227 1.19447 0.90190 0.91306 0.88430 1.83979 1.16883 1.71048 1.35567 1.21410 0.79498 1.47200 0.98859 0.88833 1.25330 1.00278 0.96389 0.94472 1.70045 1.34967 1.42049 1.02178 0.85625 0.80321 0.78484 0.78880 1.19016 1.20030 1.20031 1.21159 1.00376 1.10227 0.93874 1.20628 0.92115 0.96480 0.97632 0.91813 0.91376 0.92065 0.89061 0.91829 0.91696 0.92188 0.76133 0.91342 0.91298 0.86922 0.86326 0.91868 0.85378 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.01 37.16 0.33 -0.82 16 2 C -0.11 -0.99 2.72 -90.62 -0.25 -1.24 16 3 C -0.15 -1.03 8.94 37.16 0.33 -0.70 16 4 C 0.08 0.85 3.35 -27.89 -0.09 0.76 16 5 H 0.10 0.72 7.93 -51.93 -0.41 0.31 16 6 F -0.19 -2.32 16.44 2.25 0.04 -2.28 16 7 C 0.49 6.24 5.93 -10.99 -0.07 6.17 16 8 O -0.53 -8.81 17.02 5.56 0.09 -8.71 16 9 N -0.71 -8.30 5.55 -61.47 -0.34 -8.65 16 10 C 0.18 2.36 5.80 -5.19 -0.03 2.33 16 11 C -0.22 -3.32 5.25 -104.57 -0.55 -3.87 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 14 C 0.16 3.64 6.65 -39.10 -0.26 3.38 16 15 O -0.17 -4.69 9.76 0.05 0.00 -4.69 16 16 C -0.39 -10.50 9.49 30.88 0.29 -10.20 16 17 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.31 13.67 55.48 0.76 -23.55 16 20 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.24 -4.74 9.17 -39.39 -0.36 -5.10 16 25 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 7.39 -51.93 -0.38 0.16 16 29 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.06 0.48 7.84 -51.93 -0.41 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.40 4.00 8.31 -40.82 -0.34 3.66 16 34 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.02 346.10 -6.63 -37.65 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.46 Total: 5.36 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.90 Total: -14.97 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.42 Total: -32.19 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.10 Total: -13.40 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.02 -6.63 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784153529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.257 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds