Wall clock time and date at job start Tue Mar 31 2020 07:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47134 * 2 1 4 4 C 1.52998 * 109.46985 * 120.00311 * 2 1 3 5 5 H 1.09003 * 109.47147 * 305.31350 * 4 2 1 6 6 F 1.39900 * 109.47021 * 185.31872 * 4 2 1 7 7 C 1.50695 * 109.47319 * 65.31523 * 4 2 1 8 8 O 1.21281 * 120.00196 * 66.27382 * 7 4 2 9 9 N 1.34779 * 120.00062 * 246.27427 * 7 4 2 10 10 C 1.46507 * 119.99795 * 180.02562 * 9 7 4 11 11 C 1.50702 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.38308 * 119.92691 * 269.72172 * 11 10 9 13 13 C 1.38099 * 120.06839 * 179.72537 * 12 11 10 14 14 C 1.38882 * 119.92813 * 0.57169 * 13 12 11 15 15 O 1.35752 * 120.07009 * 179.68451 * 14 13 12 16 16 C 1.34826 * 117.00354 * 174.50285 * 15 14 13 17 17 H 1.08006 * 119.99761 * 5.09052 * 16 15 14 18 18 C 1.38649 * 120.00077 * 185.09396 * 16 15 14 19 19 N 1.31557 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47208 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47344 * 119.99752 * 20 18 16 23 23 H 1.48508 * 109.47032 * 239.99943 * 20 18 16 24 24 C 1.38885 * 119.86128 * 359.70026 * 14 13 12 25 25 C 1.38096 * 119.93199 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.46924 * 300.00154 * 1 2 3 27 27 H 1.09004 * 109.47102 * 59.99589 * 1 2 3 28 28 H 1.08998 * 109.47471 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46924 * 239.99846 * 2 1 3 30 30 H 1.08997 * 109.47321 * 185.01907 * 3 2 1 31 31 H 1.08995 * 109.47598 * 305.01987 * 3 2 1 32 32 H 1.09000 * 109.47011 * 65.01952 * 3 2 1 33 33 H 0.96996 * 120.00487 * 359.97438 * 9 7 4 34 34 H 1.08998 * 109.46594 * 299.99722 * 10 9 7 35 35 H 1.08998 * 109.47226 * 59.99816 * 10 9 7 36 36 H 1.08003 * 119.96507 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.03621 * 180.27404 * 13 12 11 38 38 H 0.97003 * 119.99929 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.03149 * 179.97438 * 24 14 13 40 40 H 1.07994 * 119.96691 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6010 -0.2654 2.1367 6 9 3.4336 -0.6164 1.3120 7 6 1.6480 -2.1750 1.1851 8 8 2.1257 -2.8949 0.3340 9 7 0.7666 -2.6751 2.0736 10 6 0.3860 -4.0885 2.0116 11 6 -0.6049 -4.3903 3.1063 12 6 -0.1571 -4.8094 4.3460 13 6 -1.0623 -5.0813 5.3529 14 6 -2.4239 -4.9450 5.1160 15 8 -3.3165 -5.2178 6.1018 16 6 -4.6136 -4.9565 5.8427 17 1 -4.9118 -4.6267 4.8584 18 6 -5.5646 -5.1113 6.8397 19 7 -5.2014 -5.5135 8.0385 20 14 -7.3615 -4.7486 6.4809 21 1 -7.5064 -4.3146 5.0681 22 1 -8.1688 -5.9742 6.7079 23 1 -7.8379 -3.6681 7.3815 24 6 -2.8706 -4.5295 3.8683 25 6 -1.9602 -4.2536 2.8672 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1263 1.4438 -0.0899 31 1 1.6052 1.9816 -0.8415 32 1 1.7520 1.9297 0.9315 33 1 0.3847 -2.0995 2.7546 34 1 -0.0672 -4.3005 1.0432 35 1 1.2722 -4.7095 2.1418 36 1 0.9017 -4.9201 4.5279 37 1 -0.7119 -5.4042 6.3221 38 1 -5.8668 -5.6221 8.7359 39 1 -3.9288 -4.4230 3.6809 40 1 -2.3069 -3.9309 1.8967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784153529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:48 Heat of formation + Delta-G solvation = -125.554860 kcal Electronic energy + Delta-G solvation = -22869.108934 eV Core-core repulsion = 19176.592150 eV Total energy + Delta-G solvation = -3692.516785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.93287 -41.06392 -40.54059 -38.52477 -36.55330 -35.78338 -34.28520 -31.87829 -31.64721 -29.01862 -27.95917 -27.52667 -25.95582 -23.65468 -22.46881 -22.07480 -21.23200 -19.88630 -19.11962 -18.75349 -17.77951 -17.11145 -16.57057 -16.40056 -16.36565 -16.03350 -15.70411 -15.54625 -15.37400 -15.02557 -14.87303 -14.41421 -14.21473 -13.98746 -13.71059 -13.63169 -13.34323 -13.30788 -13.04818 -13.02029 -12.58972 -12.36881 -12.26225 -12.12857 -12.09004 -12.04343 -11.62752 -11.20252 -10.96585 -10.77687 -10.20616 -9.81847 -9.02123 -8.48624 -6.16850 0.51934 0.57261 1.33284 1.36658 1.43586 1.54435 2.01665 2.17090 2.82289 3.15018 3.32711 3.47615 3.52672 3.70656 3.79079 3.84776 4.01628 4.16618 4.17408 4.41602 4.45083 4.52524 4.55939 4.70261 4.78374 4.79289 4.89605 4.95717 5.03049 5.13390 5.14104 5.25737 5.25898 5.33901 5.35456 5.51627 5.68795 5.73343 6.01379 6.14835 6.39071 6.96488 7.02467 7.75644 8.74446 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002836 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.411756 B = 9870.338939 C =10486.771137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.083 3.917 5 H 0.134 0.866 6 F -0.202 7.202 7 C 0.492 3.508 8 O -0.571 6.571 9 N -0.702 5.702 10 C 0.182 3.818 11 C -0.183 4.183 12 C -0.044 4.044 13 C -0.205 4.205 14 C 0.124 3.876 15 O -0.229 6.229 16 C -0.412 4.412 17 H 0.105 0.895 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.249 1.249 22 H -0.271 1.271 23 H -0.269 1.269 24 C -0.243 4.243 25 C -0.043 4.043 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 12.754 -14.175 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.202 4.202 4 C 0.044 3.956 5 H 0.152 0.848 6 F -0.183 7.183 7 C 0.277 3.723 8 O -0.450 6.450 9 N -0.354 5.354 10 C 0.059 3.941 11 C -0.185 4.185 12 C -0.062 4.062 13 C -0.224 4.224 14 C 0.073 3.927 15 O -0.135 6.135 16 C -0.488 4.488 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.172 1.172 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.061 4.061 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.164 0.836 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.729 12.088 -14.351 21.136 hybrid contribution -0.884 -0.166 0.681 1.128 sum 8.845 11.923 -13.670 20.180 Atomic orbital electron populations 1.21846 0.92253 1.02218 1.04316 1.21618 0.98126 0.97863 0.95552 1.21805 1.01317 0.93265 1.03771 1.21901 0.77076 0.92436 1.04159 0.84815 1.92841 1.30949 1.96650 1.97881 1.21366 0.79173 0.90705 0.81092 1.90714 1.55083 1.61634 1.37591 1.46227 1.44103 1.11871 1.33237 1.19954 0.96208 0.81323 0.96585 1.19440 0.93530 1.09997 0.95489 1.20881 0.99180 0.94995 0.91178 1.20443 0.89931 1.10792 1.01263 1.20002 0.90857 0.92924 0.88960 1.83951 1.17514 1.74260 1.37811 1.21880 0.80030 1.47340 0.99569 0.87765 1.26582 1.05199 0.96105 0.94083 1.70186 1.36663 1.45290 1.03611 0.84535 0.73860 0.78391 0.79490 1.17235 1.19596 1.19392 1.21248 1.00851 1.10310 0.93802 1.20936 0.91974 0.95169 0.98021 0.90195 0.90435 0.93441 0.91100 0.92714 0.90514 0.90841 0.74744 0.90668 0.90918 0.83642 0.86779 0.91806 0.86108 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.01 71.98 0.65 -1.14 16 2 C -0.11 -1.66 2.72 -10.79 -0.03 -1.69 16 3 C -0.14 -1.63 8.94 71.98 0.64 -0.98 16 4 C 0.08 1.43 3.35 29.85 0.10 1.53 16 5 H 0.13 1.38 7.93 -2.39 -0.02 1.36 16 6 F -0.20 -4.56 16.44 44.97 0.74 -3.82 16 7 C 0.49 11.17 5.93 87.66 0.52 11.69 16 8 O -0.57 -17.98 17.02 -3.03 -0.05 -18.03 16 9 N -0.70 -13.72 5.55 -466.78 -2.59 -16.31 16 10 C 0.18 4.11 5.80 85.63 0.50 4.61 16 11 C -0.18 -4.93 5.25 -19.83 -0.10 -5.04 16 12 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 13 C -0.21 -7.99 9.99 22.39 0.22 -7.77 16 14 C 0.12 5.71 6.65 22.58 0.15 5.86 16 15 O -0.23 -13.16 9.76 -22.73 -0.22 -13.39 16 16 C -0.41 -22.92 9.49 67.92 0.64 -22.27 16 17 H 0.11 5.26 5.20 -2.91 -0.02 5.25 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 19 N -0.92 -54.90 13.67 21.61 0.30 -54.60 16 20 Si 1.02 41.13 29.55 68.60 2.03 43.16 16 21 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.24 -9.56 9.17 22.39 0.21 -9.36 16 25 C -0.04 -1.27 9.69 22.25 0.22 -1.05 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.70 7.39 -2.39 -0.02 0.69 16 29 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.05 0.72 7.84 -2.39 -0.02 0.70 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.42 6.41 8.31 -92.71 -0.77 5.64 16 34 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 35 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.12 4.88 5.64 -2.91 -0.02 4.87 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -72.22 346.10 4.88 -67.34 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.29 Total: 23.08 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.40 Total: -27.42 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -2.29 Total: -70.92 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.27 Total: -31.42 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.74 Total: -3.82 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -72.22 4.88 -67.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784153529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.217 kcal (2) G-P(sol) polarization free energy of solvation -72.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds