Wall clock time and date at job start Tue Mar 31 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.33811 * 124.52665 * 90.00334 * 3 2 1 5 5 C 1.37475 * 115.10378 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29595 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45688 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46911 * 300.00027 * 11 10 9 13 13 C 1.53001 * 109.46963 * 59.99511 * 11 10 9 14 14 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 11 10 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 11 17 17 C 1.37884 * 120.00200 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99569 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47227 * 90.00066 * 19 17 15 21 21 H 1.48500 * 109.46628 * 209.99752 * 19 17 15 22 22 H 1.48493 * 109.47109 * 329.99411 * 19 17 15 23 23 S 1.70622 * 124.52031 * 270.26803 * 3 2 1 24 24 H 1.08996 * 109.47283 * 60.00256 * 1 2 3 25 25 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47109 * 299.99997 * 1 2 3 27 27 H 1.08998 * 109.47339 * 239.99920 * 2 1 3 28 28 H 1.08996 * 109.47283 * 119.99744 * 2 1 3 29 29 H 1.07999 * 122.45075 * 359.97167 * 4 3 2 30 30 H 1.07997 * 123.35109 * 180.02562 * 5 4 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 33 33 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 34 34 H 1.09002 * 109.47398 * 60.00028 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.46968 * 300.00009 * 12 11 10 37 37 H 1.09004 * 109.47086 * 60.00354 * 13 11 10 38 38 H 1.09001 * 109.46652 * 180.02562 * 13 11 10 39 39 H 1.08992 * 109.47514 * 300.00067 * 13 11 10 40 40 H 1.08992 * 109.47534 * 299.99582 * 14 11 10 41 41 H 1.08996 * 109.47134 * 60.00388 * 14 11 10 42 42 H 0.97002 * 119.99797 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1024 5 6 2.7366 3.4147 0.8773 6 6 2.8459 3.7236 -0.4493 7 6 3.2992 5.0090 -0.9885 8 8 3.6156 5.9085 -0.2323 9 7 3.3646 5.1951 -2.3218 10 6 3.8182 6.4797 -2.8607 11 6 3.7997 6.4264 -4.3897 12 6 4.7315 5.3131 -4.8725 13 6 2.3755 6.1447 -4.8729 14 6 4.2728 7.7681 -4.9525 15 6 4.2551 7.7154 -6.4584 16 1 3.9385 6.8148 -6.9636 17 6 4.6441 8.8165 -7.1915 18 7 5.0301 9.9130 -6.5763 19 14 4.6215 8.7514 -9.0582 20 1 3.2954 9.2003 -9.5532 21 1 5.6791 9.6436 -9.5974 22 1 4.8723 7.3586 -9.5079 23 16 2.3484 2.3346 -1.4058 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1440 1.7377 2.0964 30 1 2.9815 4.1060 1.6701 31 1 3.1120 4.4782 -2.9245 32 1 3.1545 7.2729 -2.5164 33 1 4.8329 6.6800 -2.5167 34 1 4.3940 4.3573 -4.4715 35 1 4.7187 5.2754 -5.9618 36 1 5.7461 5.5137 -4.5282 37 1 1.7116 6.9379 -4.5290 38 1 2.3625 6.1063 -5.9622 39 1 2.0381 5.1891 -4.4720 40 1 3.6086 8.5609 -4.6086 41 1 5.2872 7.9691 -4.6083 42 1 5.3034 10.6878 -7.0920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807722015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:24 Heat of formation + Delta-G solvation = -36.104420 kcal Electronic energy + Delta-G solvation = -21082.767274 eV Core-core repulsion = 17960.342528 eV Total energy + Delta-G solvation = -3122.424746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71447 -38.20131 -36.99871 -34.03116 -33.63939 -32.10773 -29.21681 -27.15450 -26.52716 -26.48217 -25.04192 -23.02757 -22.57574 -21.13849 -19.57896 -18.29249 -17.67481 -16.44349 -16.14275 -15.67451 -15.19514 -14.92082 -14.51478 -14.46636 -14.17948 -13.73574 -13.43585 -13.12675 -13.07897 -12.78047 -12.53481 -12.32839 -12.06650 -12.01999 -11.86273 -11.47940 -11.17097 -11.04592 -11.02414 -10.85918 -10.64819 -10.42232 -10.26511 -9.99351 -9.89385 -9.20359 -8.97794 -8.93813 -8.79137 -8.67136 -8.36258 -6.00297 -4.01615 0.35911 1.26574 1.69335 2.24836 3.29576 3.30761 3.34594 3.38023 3.40239 4.32053 4.44903 4.63539 4.86188 4.88365 5.03783 5.19682 5.33460 5.35212 5.43885 5.47148 5.54794 5.60504 5.72833 5.78139 5.81461 5.97569 6.15184 6.17750 6.20655 6.27676 6.37206 6.50655 6.61635 6.72085 7.04045 7.05961 7.10652 7.62560 7.65402 7.75511 7.98267 8.30360 8.40426 9.03053 9.61490 11.11185 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.003005 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.087246 B = 9315.072971 C = 9974.075680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.058 4.058 6 C -0.260 4.260 7 C 0.582 3.418 8 O -0.534 6.534 9 N -0.716 5.716 10 C 0.128 3.872 11 C -0.073 4.073 12 C -0.128 4.128 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 S 0.199 5.801 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 -20.339 12.524 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.316 4.316 4 C -0.183 4.183 5 C -0.090 4.090 6 C -0.380 4.380 7 C 0.368 3.632 8 O -0.413 6.413 9 N -0.367 5.367 10 C 0.006 3.994 11 C -0.073 4.073 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.001 4.001 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 S 0.467 5.533 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.474 -19.776 11.436 24.036 hybrid contribution 0.026 0.047 0.295 0.300 sum -7.448 -19.729 11.731 24.132 Atomic orbital electron populations 1.21809 0.94050 1.02155 1.02694 1.20147 0.96380 0.89406 1.03505 1.24252 1.07426 1.02064 0.97853 1.19937 1.04780 0.94132 0.99490 1.20745 0.96848 0.96199 0.95256 1.24728 1.15730 0.99497 0.98048 1.16985 0.78078 0.85503 0.82678 1.90825 1.49628 1.42712 1.58147 1.46110 1.67236 1.17661 1.05711 1.21705 0.99779 0.83212 0.94738 1.20923 0.95766 1.00051 0.90610 1.21775 0.98860 0.95501 1.02398 1.21775 0.95726 0.98647 1.02384 1.19090 0.96493 0.88888 0.95660 1.21178 1.43894 0.98642 0.91235 0.92236 1.25017 0.95544 0.95643 0.98300 1.69967 1.44912 1.03166 1.35325 0.86643 0.77648 0.77879 0.86115 1.20775 1.21341 1.19935 1.83047 1.59891 1.02705 1.07681 0.92282 0.91882 0.92173 0.90585 0.89846 0.83998 0.82996 0.76898 0.91458 0.91464 0.95364 0.91267 0.93241 0.93235 0.91279 0.95370 0.96265 0.96262 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.49 16 2 C -0.06 -0.35 6.36 -27.88 -0.18 -0.52 16 3 C -0.20 -1.74 5.53 -35.86 -0.20 -1.94 16 4 C -0.15 -1.42 9.99 -41.41 -0.41 -1.84 16 5 C -0.06 -0.67 10.01 -40.43 -0.40 -1.08 16 6 C -0.26 -3.41 6.45 -36.79 -0.24 -3.65 16 7 C 0.58 9.52 7.78 -12.90 -0.10 9.42 16 8 O -0.53 -10.58 16.84 5.19 0.09 -10.49 16 9 N -0.72 -11.16 4.95 -61.64 -0.31 -11.47 16 10 C 0.13 2.32 4.56 -4.04 -0.02 2.30 16 11 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 12 C -0.13 -2.26 8.05 37.16 0.30 -1.97 16 13 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 14 C 0.04 0.89 4.04 -27.89 -0.11 0.77 16 15 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 16 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 S 0.20 2.00 22.10 -107.50 -2.38 -0.38 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.40 5.38 5.28 -40.82 -0.22 5.17 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -30.89 354.32 -9.23 -40.12 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.54 Total: 1.16 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.14 Total: -14.75 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.43 Total: -37.12 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.89 -9.23 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.012 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds