Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.33811 * 124.52665 * 90.00334 * 3 2 1 5 5 C 1.37475 * 115.10378 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29595 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45688 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46911 * 300.00027 * 11 10 9 13 13 C 1.53001 * 109.46963 * 59.99511 * 11 10 9 14 14 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 11 10 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 11 17 17 C 1.37884 * 120.00200 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99569 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47227 * 90.00066 * 19 17 15 21 21 H 1.48500 * 109.46628 * 209.99752 * 19 17 15 22 22 H 1.48493 * 109.47109 * 329.99411 * 19 17 15 23 23 S 1.70622 * 124.52031 * 270.26803 * 3 2 1 24 24 H 1.08996 * 109.47283 * 60.00256 * 1 2 3 25 25 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47109 * 299.99997 * 1 2 3 27 27 H 1.08998 * 109.47339 * 239.99920 * 2 1 3 28 28 H 1.08996 * 109.47283 * 119.99744 * 2 1 3 29 29 H 1.07999 * 122.45075 * 359.97167 * 4 3 2 30 30 H 1.07997 * 123.35109 * 180.02562 * 5 4 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 33 33 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 34 34 H 1.09002 * 109.47398 * 60.00028 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.46968 * 300.00009 * 12 11 10 37 37 H 1.09004 * 109.47086 * 60.00354 * 13 11 10 38 38 H 1.09001 * 109.46652 * 180.02562 * 13 11 10 39 39 H 1.08992 * 109.47514 * 300.00067 * 13 11 10 40 40 H 1.08992 * 109.47534 * 299.99582 * 14 11 10 41 41 H 1.08996 * 109.47134 * 60.00388 * 14 11 10 42 42 H 0.97002 * 119.99797 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1024 5 6 2.7366 3.4147 0.8773 6 6 2.8459 3.7236 -0.4493 7 6 3.2992 5.0090 -0.9885 8 8 3.6156 5.9085 -0.2323 9 7 3.3646 5.1951 -2.3218 10 6 3.8182 6.4797 -2.8607 11 6 3.7997 6.4264 -4.3897 12 6 4.7315 5.3131 -4.8725 13 6 2.3755 6.1447 -4.8729 14 6 4.2728 7.7681 -4.9525 15 6 4.2551 7.7154 -6.4584 16 1 3.9385 6.8148 -6.9636 17 6 4.6441 8.8165 -7.1915 18 7 5.0301 9.9130 -6.5763 19 14 4.6215 8.7514 -9.0582 20 1 3.2954 9.2003 -9.5532 21 1 5.6791 9.6436 -9.5974 22 1 4.8723 7.3586 -9.5079 23 16 2.3484 2.3346 -1.4058 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1440 1.7377 2.0964 30 1 2.9815 4.1060 1.6701 31 1 3.1120 4.4782 -2.9245 32 1 3.1545 7.2729 -2.5164 33 1 4.8329 6.6800 -2.5167 34 1 4.3940 4.3573 -4.4715 35 1 4.7187 5.2754 -5.9618 36 1 5.7461 5.5137 -4.5282 37 1 1.7116 6.9379 -4.5290 38 1 2.3625 6.1063 -5.9622 39 1 2.0381 5.1891 -4.4720 40 1 3.6086 8.5609 -4.6086 41 1 5.2872 7.9691 -4.6083 42 1 5.3034 10.6878 -7.0920 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807722015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -53.596606 kcal Electronic energy + Delta-G solvation = -21083.525792 eV Core-core repulsion = 17960.342528 eV Total energy + Delta-G solvation = -3123.183264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01143 -39.17455 -38.42700 -35.31315 -34.66220 -33.96054 -30.17308 -29.03319 -27.99493 -27.74341 -26.07065 -24.76079 -23.23195 -22.36406 -20.75005 -19.54805 -18.86330 -18.37084 -17.19983 -16.89396 -16.54644 -16.41553 -15.89277 -15.30020 -15.19903 -14.94030 -14.74512 -14.47526 -14.29741 -13.95446 -13.89950 -13.72268 -13.28086 -12.90647 -12.80966 -12.72816 -12.60816 -12.41667 -12.35737 -12.24446 -12.06736 -11.99428 -11.68063 -11.56917 -11.36469 -10.97325 -10.86447 -10.50985 -10.27177 -9.64906 -9.54430 -8.13580 -6.21420 -0.52770 0.44051 0.89011 1.37600 1.43344 1.43764 1.54159 2.07805 2.13766 2.45360 3.21033 3.69514 3.77763 3.95947 4.04247 4.15673 4.18696 4.34333 4.42412 4.49349 4.65216 4.67630 4.73047 4.81508 4.92121 4.93297 5.04702 5.06769 5.09856 5.14919 5.21263 5.29087 5.36714 5.42007 5.43611 5.48441 5.50273 5.55737 5.78158 5.89563 6.29423 6.40655 6.93437 7.05311 7.46310 8.99049 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.003005 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.087246 B = 9315.072971 C = 9974.075680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.161 4.161 5 C -0.052 4.052 6 C -0.303 4.303 7 C 0.582 3.418 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.140 3.860 11 C -0.065 4.065 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.040 3.960 15 C -0.513 4.513 16 H 0.074 0.926 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.258 1.258 23 S 0.228 5.772 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.408 0.592 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.065 0.935 40 H -0.013 1.013 41 H -0.013 1.013 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.972 -24.184 12.080 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.300 4.300 4 C -0.191 4.191 5 C -0.086 4.086 6 C -0.423 4.423 7 C 0.370 3.630 8 O -0.463 6.463 9 N -0.358 5.358 10 C 0.017 3.983 11 C -0.066 4.066 12 C -0.180 4.180 13 C -0.181 4.181 14 C 0.003 3.997 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.182 1.182 23 S 0.497 5.503 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.185 0.815 30 H 0.164 0.836 31 H 0.245 0.755 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.793 -23.668 10.970 27.529 hybrid contribution 0.393 1.151 0.533 1.327 sum -8.400 -22.518 11.503 26.644 Atomic orbital electron populations 1.21818 0.93490 1.03145 1.02254 1.20323 0.96705 0.87591 1.04986 1.24726 1.05118 1.03036 0.97112 1.20111 1.04894 0.93094 1.01000 1.20947 0.95818 0.97172 0.94709 1.24441 1.19067 0.99525 0.99288 1.17426 0.77005 0.86310 0.82250 1.90791 1.51738 1.44677 1.59061 1.45869 1.67125 1.16824 1.05966 1.21326 0.98624 0.84287 0.94102 1.20728 0.97257 0.97634 0.90935 1.21712 0.98028 0.96458 1.01837 1.21713 0.94181 1.00296 1.01862 1.18965 0.94107 0.91217 0.95450 1.21585 1.42559 0.98874 0.92091 0.90811 1.25957 0.95434 0.95369 1.03463 1.70126 1.46554 1.04055 1.37275 0.85531 0.77569 0.78476 0.79990 1.20164 1.21633 1.18241 1.82853 1.59089 1.00896 1.07486 0.92975 0.90254 0.92412 0.89483 0.88035 0.81461 0.83588 0.75471 0.93094 0.93092 0.91636 0.92116 0.94205 0.94208 0.92078 0.91651 0.99430 0.99426 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 71.98 0.71 -0.47 16 2 C -0.06 -0.48 6.36 29.85 0.19 -0.29 16 3 C -0.18 -2.60 5.53 24.68 0.14 -2.46 16 4 C -0.16 -2.58 9.99 21.08 0.21 -2.37 16 5 C -0.05 -1.17 10.01 21.72 0.22 -0.95 16 6 C -0.30 -7.71 6.45 24.08 0.16 -7.55 16 7 C 0.58 19.23 7.78 86.42 0.67 19.90 16 8 O -0.58 -23.95 16.84 -4.36 -0.07 -24.02 16 9 N -0.71 -21.74 4.95 -467.15 -2.31 -24.05 16 10 C 0.14 5.24 4.56 86.38 0.39 5.64 16 11 C -0.07 -2.51 0.54 -52.18 -0.03 -2.53 16 12 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 13 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 14 C 0.04 2.06 4.04 29.85 0.12 2.18 16 15 C -0.51 -27.45 7.65 25.60 0.20 -27.26 16 16 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 S 0.23 3.99 22.10 -56.49 -1.25 2.74 16 24 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.41 10.29 5.28 -92.71 -0.49 9.80 16 32 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.74 6.86 -2.39 -0.02 1.72 16 35 H 0.06 2.19 6.62 -2.39 -0.02 2.17 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 2.19 6.62 -2.39 -0.02 2.18 16 39 H 0.06 1.73 6.86 -2.39 -0.02 1.72 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.66 354.32 3.79 -65.87 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.52 Total: 14.18 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.60 Total: -23.28 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.03 Total: -81.02 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.07 Total: -24.02 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.25 Total: 2.74 kcal Total: -69.66 3.79 -65.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.275 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds