Wall clock time and date at job start Tue Mar 31 2020 07:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47052 * 2 1 4 4 C 1.50703 * 109.47073 * 240.00244 * 2 1 3 5 5 H 1.07995 * 119.99761 * 239.99838 * 4 2 1 6 6 C 1.37875 * 119.99630 * 59.99700 * 4 2 1 7 7 N 1.31515 * 120.00520 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99807 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47175 * 59.99918 * 8 6 4 10 10 H 1.48503 * 109.46963 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46583 * 299.99912 * 8 6 4 12 12 C 1.52999 * 109.47698 * 120.00133 * 2 1 3 13 13 N 1.46506 * 109.46833 * 300.00313 * 12 2 1 14 14 C 1.34779 * 119.99807 * 179.97438 * 13 12 2 15 15 O 1.21286 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00046 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47069 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46776 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.08998 * 109.46850 * 299.99771 * 1 2 3 25 25 H 1.08996 * 109.47302 * 59.99537 * 1 2 3 26 26 H 1.08994 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47325 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47020 * 300.00632 * 3 2 1 29 29 H 1.08999 * 109.46592 * 60.00294 * 3 2 1 30 30 H 0.97001 * 120.00109 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47222 * 180.02562 * 12 2 1 32 32 H 1.09003 * 109.46944 * 59.99629 * 12 2 1 33 33 H 0.96999 * 120.00283 * 359.97438 * 13 12 2 34 34 H 1.09005 * 109.47250 * 59.99836 * 16 14 13 35 35 H 1.09007 * 109.47222 * 300.00088 * 16 14 13 36 36 H 1.08994 * 109.46921 * 60.00192 * 17 16 14 37 37 H 1.08994 * 109.47207 * 299.99884 * 17 16 14 38 38 H 1.08994 * 109.47301 * 60.00348 * 18 17 16 39 39 H 1.09003 * 109.46866 * 299.99784 * 18 17 16 40 40 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 41 41 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5200 -4.0079 10 1 1.8267 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0083 12 6 2.0402 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4914 3.6695 15 8 2.5737 -1.4780 3.7807 16 6 1.3752 0.2192 4.9000 17 6 1.8853 -0.5022 6.1492 18 6 1.3752 0.2191 7.3984 19 6 1.8781 -0.4910 8.6289 20 6 1.1740 -1.5160 9.2369 21 6 1.7592 -2.0365 10.3167 22 16 3.2885 -1.2189 10.6107 23 6 3.0352 -0.1793 9.2148 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7094 1.1619 -3.4844 31 1 3.1301 -0.7208 1.2493 32 1 1.6768 -1.7489 1.2492 33 1 0.9943 0.7582 2.3565 34 1 0.2852 0.2200 4.9000 35 1 1.7393 1.2467 4.9000 36 1 2.9752 -0.5024 6.1489 37 1 1.5216 -1.5296 6.1493 38 1 0.2852 0.2190 7.3985 39 1 1.7385 1.2467 7.3985 40 1 0.2230 -1.8678 8.8651 41 1 1.3577 -2.8402 10.9160 42 1 3.7147 0.5907 8.8803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837890441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:31 Heat of formation + Delta-G solvation = -30.885079 kcal Electronic energy + Delta-G solvation = -20768.658762 eV Core-core repulsion = 17646.460344 eV Total energy + Delta-G solvation = -3122.198419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.39146 -38.55145 -36.40997 -34.11495 -33.23980 -30.96697 -30.10948 -27.71994 -25.72994 -25.57392 -24.89350 -23.43819 -21.73483 -19.89306 -18.92297 -18.75157 -17.83555 -16.77690 -15.85951 -15.70100 -15.36028 -15.01973 -14.55868 -14.15614 -13.72085 -13.40392 -13.16553 -13.08083 -12.91396 -12.59333 -12.50982 -12.20161 -11.78998 -11.73741 -11.46452 -11.34319 -11.18118 -10.89702 -10.84179 -10.72963 -10.70337 -10.38332 -10.20578 -9.63376 -9.52828 -9.20638 -9.00346 -8.79259 -8.56215 -8.43858 -8.28725 -6.02101 -4.12182 0.80605 1.46383 1.78256 2.49926 3.11251 3.30043 3.34231 3.37804 3.80708 4.40255 4.63740 4.74742 4.95891 5.01877 5.08968 5.24478 5.29180 5.31380 5.43814 5.58829 5.63535 5.69358 5.83220 6.02839 6.21786 6.25635 6.32959 6.34030 6.35425 6.51330 6.79492 6.82175 6.94072 7.01872 7.06541 7.35685 7.55493 7.69264 8.00890 8.08335 8.17269 8.38853 8.75691 8.88671 9.53552 10.99233 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.002225 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.458454 B =12579.208304 C =12764.951700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.142 4.142 17 C -0.095 4.095 18 C -0.062 4.062 19 C -0.096 4.096 20 C -0.128 4.128 21 C -0.213 4.213 22 S 0.081 5.919 23 C -0.211 4.211 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 1.228 22.798 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.369 5.369 14 C 0.287 3.713 15 O -0.434 6.434 16 C -0.182 4.182 17 C -0.134 4.134 18 C -0.102 4.102 19 C -0.108 4.108 20 C -0.159 4.159 21 C -0.348 4.348 22 S 0.344 5.656 23 C -0.346 4.346 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.513 0.479 23.812 23.823 hybrid contribution -1.032 0.018 -1.976 2.230 sum -0.519 0.497 21.836 21.848 Atomic orbital electron populations 1.21826 0.97777 0.99158 1.00072 1.18355 0.92788 0.92754 0.90623 1.21829 0.98561 0.98371 1.00072 1.20953 1.31490 1.12094 0.89931 0.92530 1.24882 0.94870 0.94936 0.98843 1.69792 1.36671 1.22723 1.23317 0.86633 0.79241 0.79799 0.82179 1.20282 1.21326 1.20288 1.21690 0.98053 0.95762 0.83601 1.46352 1.52671 1.31766 1.06159 1.20618 0.80767 0.84904 0.85013 1.90668 1.38756 1.26858 1.87088 1.21692 1.02446 1.00742 0.93343 1.21279 1.01685 0.99581 0.90833 1.20397 1.00802 0.98481 0.90530 1.18980 0.94957 0.98203 0.98651 1.20152 1.01944 0.97623 0.96160 1.25584 0.99225 1.06501 1.03502 1.84253 1.20947 1.31113 1.29277 1.25479 1.02007 1.06280 1.00826 0.97470 0.89615 0.95475 0.95482 0.89604 0.97482 0.92957 0.92867 0.92857 0.76760 0.89172 0.89203 0.91131 0.91073 0.90746 0.90888 0.84169 0.81977 0.81902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.28 0.50 -155.65 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 13 N -0.72 -12.59 4.96 -60.29 -0.30 -12.89 16 14 C 0.50 8.42 7.83 -10.99 -0.09 8.33 16 15 O -0.55 -11.55 15.98 5.55 0.09 -11.46 16 16 C -0.14 -1.62 5.70 -27.88 -0.16 -1.78 16 17 C -0.10 -1.08 4.49 -26.73 -0.12 -1.20 16 18 C -0.06 -0.54 5.47 -27.88 -0.15 -0.69 16 19 C -0.10 -0.92 5.06 -106.25 -0.54 -1.46 16 20 C -0.13 -1.18 9.98 -41.21 -0.41 -1.59 16 21 C -0.21 -1.81 11.23 29.04 0.33 -1.49 16 22 S 0.08 0.70 23.34 -107.50 -2.51 -1.81 16 23 C -0.21 -1.96 10.98 29.04 0.32 -1.64 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 6.19 6.16 -40.82 -0.25 5.94 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.48 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -29.26 353.09 -9.21 -38.48 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.63 Total: 4.38 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.68 Total: -14.70 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.22 Total: -35.95 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.26 -9.21 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.591 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds