Wall clock time and date at job start Tue Mar 31 2020 07:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47052 * 2 1 4 4 C 1.50703 * 109.47073 * 240.00244 * 2 1 3 5 5 H 1.07995 * 119.99761 * 239.99838 * 4 2 1 6 6 C 1.37875 * 119.99630 * 59.99700 * 4 2 1 7 7 N 1.31515 * 120.00520 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99807 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47175 * 59.99918 * 8 6 4 10 10 H 1.48503 * 109.46963 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46583 * 299.99912 * 8 6 4 12 12 C 1.52999 * 109.47698 * 120.00133 * 2 1 3 13 13 N 1.46506 * 109.46833 * 300.00313 * 12 2 1 14 14 C 1.34779 * 119.99807 * 179.97438 * 13 12 2 15 15 O 1.21286 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00046 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47069 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46776 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.08998 * 109.46850 * 299.99771 * 1 2 3 25 25 H 1.08996 * 109.47302 * 59.99537 * 1 2 3 26 26 H 1.08994 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47325 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47020 * 300.00632 * 3 2 1 29 29 H 1.08999 * 109.46592 * 60.00294 * 3 2 1 30 30 H 0.97001 * 120.00109 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47222 * 180.02562 * 12 2 1 32 32 H 1.09003 * 109.46944 * 59.99629 * 12 2 1 33 33 H 0.96999 * 120.00283 * 359.97438 * 13 12 2 34 34 H 1.09005 * 109.47250 * 59.99836 * 16 14 13 35 35 H 1.09007 * 109.47222 * 300.00088 * 16 14 13 36 36 H 1.08994 * 109.46921 * 60.00192 * 17 16 14 37 37 H 1.08994 * 109.47207 * 299.99884 * 17 16 14 38 38 H 1.08994 * 109.47301 * 60.00348 * 18 17 16 39 39 H 1.09003 * 109.46866 * 299.99784 * 18 17 16 40 40 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 41 41 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5200 -4.0079 10 1 1.8267 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0083 12 6 2.0402 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4914 3.6695 15 8 2.5737 -1.4780 3.7807 16 6 1.3752 0.2192 4.9000 17 6 1.8853 -0.5022 6.1492 18 6 1.3752 0.2191 7.3984 19 6 1.8781 -0.4910 8.6289 20 6 1.1740 -1.5160 9.2369 21 6 1.7592 -2.0365 10.3167 22 16 3.2885 -1.2189 10.6107 23 6 3.0352 -0.1793 9.2148 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7094 1.1619 -3.4844 31 1 3.1301 -0.7208 1.2493 32 1 1.6768 -1.7489 1.2492 33 1 0.9943 0.7582 2.3565 34 1 0.2852 0.2200 4.9000 35 1 1.7393 1.2467 4.9000 36 1 2.9752 -0.5024 6.1489 37 1 1.5216 -1.5296 6.1493 38 1 0.2852 0.2190 7.3985 39 1 1.7385 1.2467 7.3985 40 1 0.2230 -1.8678 8.8651 41 1 1.3577 -2.8402 10.9160 42 1 3.7147 0.5907 8.8803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837890441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:30 Heat of formation + Delta-G solvation = -46.345404 kcal Electronic energy + Delta-G solvation = -20769.329172 eV Core-core repulsion = 17646.460344 eV Total energy + Delta-G solvation = -3122.868829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75683 -39.29480 -38.13003 -35.02658 -34.94475 -32.73629 -30.94117 -28.64872 -27.55005 -27.38677 -26.49311 -24.32687 -22.62626 -21.20815 -20.56535 -19.59929 -18.59918 -18.14705 -17.56417 -16.82007 -16.68398 -16.45281 -16.02538 -15.36610 -14.92881 -14.65549 -14.43931 -14.35471 -13.98140 -13.84215 -13.58056 -13.30714 -13.17086 -13.06882 -12.69275 -12.66425 -12.54179 -12.50619 -12.27567 -12.23044 -12.13071 -11.61386 -11.49278 -11.47191 -11.26044 -10.79041 -10.64823 -10.39260 -9.88669 -9.67091 -9.24277 -8.02207 -6.17899 0.14077 0.81657 1.12563 1.43509 1.44679 1.51304 1.78977 1.81430 2.38865 2.55159 3.21044 3.88914 3.95370 4.06101 4.22153 4.35591 4.44663 4.51538 4.58057 4.61575 4.72042 4.75852 4.80263 4.83549 4.97597 5.02564 5.07310 5.11951 5.14084 5.20720 5.24837 5.38686 5.44723 5.59822 5.64968 5.66507 5.67259 5.68484 6.16755 6.22924 6.44291 6.75880 6.86163 7.42253 7.49629 8.96304 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.002225 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.458454 B =12579.208304 C =12764.951700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.148 3.852 13 N -0.713 5.713 14 C 0.497 3.503 15 O -0.600 6.600 16 C -0.130 4.130 17 C -0.090 4.090 18 C -0.053 4.053 19 C -0.109 4.109 20 C -0.144 4.144 21 C -0.217 4.217 22 S 0.077 5.923 23 C -0.224 4.224 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.410 0.590 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.182 0.818 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 2.292 24.066 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.023 3.977 13 N -0.365 5.365 14 C 0.286 3.714 15 O -0.482 6.482 16 C -0.169 4.169 17 C -0.128 4.128 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.174 4.174 21 C -0.352 4.352 22 S 0.340 5.660 23 C -0.359 4.359 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.248 0.752 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.170 0.830 41 H 0.199 0.801 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.472 1.569 25.094 25.147 hybrid contribution -0.705 -0.351 -2.329 2.458 sum -1.177 1.218 22.765 22.828 Atomic orbital electron populations 1.21668 0.96996 0.98619 1.00559 1.18362 0.93347 0.93071 0.90250 1.21671 0.97820 0.97800 1.00558 1.21255 1.31757 1.12158 0.91738 0.94003 1.25444 0.95173 0.95629 1.00915 1.69893 1.36915 1.23187 1.23668 0.85842 0.78599 0.78831 0.79676 1.20324 1.20696 1.20351 1.21207 0.96724 0.94984 0.84744 1.46196 1.52893 1.31978 1.05402 1.21630 0.79548 0.84310 0.85957 1.90655 1.40760 1.29091 1.87695 1.21735 1.04112 1.01210 0.89856 1.21189 1.00377 0.98993 0.92254 1.20344 1.01741 0.98660 0.88541 1.19206 0.95201 0.98590 0.99162 1.20397 1.02664 0.97830 0.96498 1.25901 0.98922 1.06772 1.03578 1.84245 1.21329 1.31163 1.29217 1.25734 1.02314 1.06766 1.01090 0.94069 0.91912 0.96474 0.96495 0.91898 0.94084 0.92993 0.94836 0.94807 0.75244 0.86141 0.86232 0.93226 0.93079 0.89052 0.89309 0.83004 0.80103 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.32 0.50 -52.92 -0.03 2.29 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.23 8.01 25.60 0.21 -28.03 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.72 9.35 21.45 0.20 -47.52 16 8 Si 0.94 42.72 29.54 68.60 2.03 44.75 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.31 4.50 86.38 0.39 6.70 16 13 N -0.71 -23.70 4.96 -463.05 -2.30 -25.99 16 14 C 0.50 15.91 7.83 87.65 0.69 16.60 16 15 O -0.60 -25.06 15.98 -3.05 -0.05 -25.11 16 16 C -0.13 -2.52 5.70 29.85 0.17 -2.35 16 17 C -0.09 -1.85 4.49 30.60 0.14 -1.72 16 18 C -0.05 -0.77 5.47 29.85 0.16 -0.61 16 19 C -0.11 -1.92 5.06 -20.92 -0.11 -2.02 16 20 C -0.14 -2.41 9.98 21.22 0.21 -2.20 16 21 C -0.22 -3.39 11.23 66.72 0.75 -2.64 16 22 S 0.08 1.26 23.34 -56.49 -1.32 -0.06 16 23 C -0.22 -3.89 10.98 66.72 0.73 -3.16 16 24 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 25 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 29 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 30 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 11.43 6.16 -92.71 -0.57 10.85 16 34 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.05 1.22 8.10 -2.39 -0.02 1.21 16 37 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 39 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -64.22 353.09 3.90 -60.32 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.43 Total: 18.24 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.91 Total: -24.63 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -2.10 Total: -73.51 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -1.32 Total: -0.06 kcal Total: -64.22 3.90 -60.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.973 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds