Wall clock time and date at job start Tue Mar 31 2020 08:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47458 * 2 1 4 4 H 1.09001 * 109.47316 * 185.17516 * 3 2 1 5 5 C 1.50697 * 109.47382 * 305.18024 * 3 2 1 6 6 H 1.08001 * 120.00207 * 119.99800 * 5 3 2 7 7 C 1.37879 * 119.99865 * 299.99910 * 5 3 2 8 8 N 1.31512 * 119.99589 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00043 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47260 * 89.99781 * 9 7 5 11 11 H 1.48498 * 109.47106 * 210.00014 * 9 7 5 12 12 H 1.48498 * 109.47332 * 329.99846 * 9 7 5 13 13 N 1.46910 * 109.47125 * 65.18266 * 3 2 1 14 14 C 1.46899 * 110.99763 * 85.92146 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.73965 * 14 13 3 16 16 C 1.38091 * 119.93213 * 259.72284 * 15 14 13 17 17 C 1.38772 * 120.43101 * 179.76450 * 16 15 14 18 18 F 1.35096 * 119.85612 * 180.27939 * 17 16 15 19 19 C 1.37910 * 120.28650 * 0.51861 * 17 16 15 20 20 C 1.39994 * 119.85257 * 359.74113 * 19 17 16 21 21 C 1.46787 * 120.21252 * 180.02562 * 20 19 17 22 22 C 1.50701 * 119.99887 * 359.97438 * 21 20 19 23 23 O 1.21294 * 120.00334 * 179.97438 * 21 20 19 24 24 C 1.38628 * 119.93032 * 80.00567 * 15 14 13 25 25 O 1.35642 * 120.14509 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47778 * 174.85430 * 1 2 3 27 27 H 1.09007 * 109.46624 * 54.85618 * 1 2 3 28 28 H 1.08994 * 109.47094 * 294.86031 * 1 2 3 29 29 H 1.09006 * 109.46931 * 120.00582 * 2 1 3 30 30 H 1.09002 * 109.47077 * 239.99835 * 2 1 3 31 31 H 0.97002 * 119.99927 * 180.02562 * 8 7 5 32 32 H 1.00898 * 110.99121 * 321.97235 * 13 3 2 33 33 H 1.08995 * 109.47219 * 294.73796 * 14 13 3 34 34 H 1.08999 * 109.47280 * 54.74472 * 14 13 3 35 35 H 1.08002 * 119.78009 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.07309 * 179.76417 * 19 17 16 37 37 H 1.09002 * 109.47131 * 0.02562 * 22 21 20 38 38 H 1.08996 * 109.47399 * 119.99834 * 22 21 20 39 39 H 1.09003 * 109.46917 * 240.00457 * 22 21 20 40 40 H 0.96697 * 113.99833 * 90.00099 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1261 1.4438 -0.0927 5 6 1.4358 2.1890 -1.1612 6 1 0.8267 3.0629 -0.9833 7 6 1.6605 1.7562 -2.4510 8 7 1.1327 2.4075 -3.4643 9 14 2.7145 0.2451 -2.7588 10 1 1.8540 -0.9652 -2.7672 11 1 3.3968 0.3765 -4.0712 12 1 3.7305 0.1226 -1.6828 13 7 1.6552 2.0979 1.2572 14 6 2.6444 1.8367 2.3113 15 6 2.2858 2.6268 3.5435 16 6 2.9437 3.8091 3.8196 17 6 2.6184 4.5474 4.9486 18 9 3.2656 5.7053 5.2045 19 6 1.6408 4.1018 5.8132 20 6 0.9699 2.9021 5.5478 21 6 -0.0724 2.4206 6.4624 22 6 -0.4229 3.2182 7.6921 23 8 -0.6516 1.3809 6.2284 24 6 1.3002 2.1623 4.4005 25 8 0.6574 0.9983 4.1322 26 1 -0.3634 -1.0234 -0.0922 27 1 -0.3633 0.5916 -0.8404 28 1 -0.3633 0.4320 0.9324 29 1 1.8933 -0.5140 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.2905 2.1029 -4.3716 32 1 0.7328 1.8098 1.5474 33 1 2.6487 0.7732 2.5501 34 1 3.6334 2.1350 1.9635 35 1 3.7136 4.1636 3.1501 36 1 1.3930 4.6772 6.6929 37 1 0.1969 4.1139 7.7331 38 1 -1.4735 3.5054 7.6516 39 1 -0.2457 2.6123 8.5807 40 1 1.0807 0.2179 4.5155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846990685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:43 Heat of formation + Delta-G solvation = -91.946192 kcal Electronic energy + Delta-G solvation = -23882.734510 eV Core-core repulsion = 20191.675106 eV Total energy + Delta-G solvation = -3691.059403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.02063 -40.58154 -38.65474 -36.76161 -36.62783 -33.50666 -32.01253 -31.11797 -29.50043 -29.33531 -26.99088 -24.91786 -23.94054 -23.16780 -21.75815 -19.83747 -19.55006 -18.56151 -17.44763 -17.14578 -16.38616 -16.00668 -15.54305 -15.51858 -15.14127 -15.03188 -14.89709 -14.75071 -13.88421 -13.76898 -13.68641 -13.15326 -12.78683 -12.67821 -12.47671 -12.41421 -12.37471 -11.96255 -11.83425 -11.72699 -11.10295 -10.93097 -10.71819 -10.55694 -10.42265 -9.87666 -9.76011 -9.43447 -9.18119 -9.12536 -8.63837 -8.52336 -7.45314 -6.03351 -3.99268 0.32808 0.89292 2.16383 3.26659 3.28475 3.34428 3.38159 3.69907 3.98577 4.07123 4.39093 4.41146 4.62496 4.87355 4.94377 5.08554 5.11745 5.25066 5.28466 5.39578 5.51950 5.55337 5.66605 5.74494 5.93716 5.94290 5.96094 6.03571 6.20892 6.30215 6.51237 6.57956 6.79623 6.83728 7.00280 7.32337 7.32443 7.54638 7.71109 7.87953 8.30652 8.70058 9.08502 9.59153 11.10046 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.004171 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.145581 B = 6711.521989 C = 7566.155736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.186 3.814 4 H 0.033 0.967 5 C -0.490 4.490 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.665 5.665 14 C 0.098 3.902 15 C -0.076 4.076 16 C -0.088 4.088 17 C 0.078 3.922 18 F -0.137 7.137 19 C -0.105 4.105 20 C -0.179 4.179 21 C 0.395 3.605 22 C -0.201 4.201 23 O -0.439 6.439 24 C 0.165 3.835 25 O -0.470 6.470 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.263 0.737 32 H 0.341 0.659 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 0.393 22.109 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.296 5.296 14 C -0.032 4.032 15 C -0.078 4.078 16 C -0.108 4.108 17 C 0.058 3.942 18 F -0.116 7.116 19 C -0.124 4.124 20 C -0.180 4.180 21 C 0.272 3.728 22 C -0.258 4.258 23 O -0.314 6.314 24 C 0.118 3.882 25 O -0.280 6.280 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.290 0.844 21.301 21.441 hybrid contribution 0.871 -1.759 0.147 1.968 sum 3.161 -0.915 21.448 21.699 Atomic orbital electron populations 1.21648 0.95639 0.99610 1.02679 1.22478 0.97446 1.00843 0.98794 1.19732 0.95927 0.88372 0.88257 0.94947 1.20874 1.31204 1.12738 0.88017 0.90038 1.24888 0.95560 0.96581 0.96144 1.69880 1.44980 1.40224 0.98813 0.86961 0.81100 0.83946 0.76789 1.20628 1.22487 1.19608 1.60729 1.04185 1.62583 1.02141 1.20815 0.98049 0.95512 0.88793 1.20241 0.94411 0.96016 0.97091 1.21245 1.00558 0.93478 0.95480 1.17467 0.95531 0.84455 0.96714 1.91516 1.80096 1.45961 1.94001 1.21274 0.95220 0.96029 0.99866 1.20696 1.01888 0.97839 0.97611 1.22178 0.80008 0.85184 0.85461 1.22242 1.04411 1.01770 0.97360 1.90596 1.46414 1.22166 1.72214 1.18576 0.90188 0.88581 0.90848 1.84798 1.52169 1.14389 1.76679 0.95142 0.90151 0.93705 0.94922 0.93396 0.92727 0.83959 0.94765 0.90245 0.83534 0.83548 0.89914 0.88663 0.88795 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.40 37.16 0.35 -2.49 16 2 C -0.16 -3.32 5.22 -26.73 -0.14 -3.46 16 3 C 0.19 4.25 1.93 -68.86 -0.13 4.12 16 4 H 0.03 0.77 6.76 -51.93 -0.35 0.42 16 5 C -0.49 -13.46 7.83 -34.44 -0.27 -13.73 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 9 Si 0.88 21.67 24.32 -169.99 -4.13 17.53 16 10 H -0.28 -6.75 6.92 56.52 0.39 -6.35 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.66 -13.27 6.19 -109.22 -0.68 -13.95 16 14 C 0.10 1.54 5.30 -4.97 -0.03 1.51 16 15 C -0.08 -1.05 5.44 -104.53 -0.57 -1.62 16 16 C -0.09 -1.11 9.63 -39.44 -0.38 -1.49 16 17 C 0.08 0.89 7.28 -39.50 -0.29 0.60 16 18 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 19 C -0.10 -1.04 9.42 -39.04 -0.37 -1.41 16 20 C -0.18 -2.05 5.88 -104.95 -0.62 -2.67 16 21 C 0.39 4.31 7.22 -30.85 -0.22 4.09 16 22 C -0.20 -1.33 10.19 36.01 0.37 -0.97 16 23 O -0.44 -6.27 15.91 -16.38 -0.26 -6.53 16 24 C 0.16 2.19 6.70 -38.60 -0.26 1.93 16 25 O -0.47 -6.37 10.76 -40.55 -0.44 -6.81 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.88 6.85 -51.92 -0.36 1.53 16 28 H 0.04 0.86 6.63 -51.93 -0.34 0.51 16 29 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 30 H 0.05 1.08 3.42 -51.93 -0.18 0.90 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.34 6.85 6.65 -39.29 -0.26 6.59 16 33 H 0.03 0.51 7.25 -51.93 -0.38 0.13 16 34 H 0.08 1.22 7.77 -51.93 -0.40 0.81 16 35 H 0.15 1.72 8.02 -52.49 -0.42 1.30 16 36 H 0.15 0.99 5.92 -52.49 -0.31 0.68 16 37 H 0.08 0.39 5.60 -51.93 -0.29 0.10 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.39 3.76 9.06 45.56 0.41 4.17 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -32.37 328.05 -6.54 -38.91 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.14 Total: 7.68 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.65 Total: -13.71 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.10 Total: -40.45 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.70 Total: -13.34 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.13 Total: 17.53 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.37 -6.54 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846990685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.038 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds