Wall clock time and date at job start Tue Mar 31 2020 08:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47458 * 2 1 4 4 H 1.09001 * 109.47316 * 185.17516 * 3 2 1 5 5 C 1.50697 * 109.47382 * 305.18024 * 3 2 1 6 6 H 1.08001 * 120.00207 * 119.99800 * 5 3 2 7 7 C 1.37879 * 119.99865 * 299.99910 * 5 3 2 8 8 N 1.31512 * 119.99589 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00043 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47260 * 89.99781 * 9 7 5 11 11 H 1.48498 * 109.47106 * 210.00014 * 9 7 5 12 12 H 1.48498 * 109.47332 * 329.99846 * 9 7 5 13 13 N 1.46910 * 109.47125 * 65.18266 * 3 2 1 14 14 C 1.46899 * 110.99763 * 85.92146 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.73965 * 14 13 3 16 16 C 1.38091 * 119.93213 * 259.72284 * 15 14 13 17 17 C 1.38772 * 120.43101 * 179.76450 * 16 15 14 18 18 F 1.35096 * 119.85612 * 180.27939 * 17 16 15 19 19 C 1.37910 * 120.28650 * 0.51861 * 17 16 15 20 20 C 1.39994 * 119.85257 * 359.74113 * 19 17 16 21 21 C 1.46787 * 120.21252 * 180.02562 * 20 19 17 22 22 C 1.50701 * 119.99887 * 359.97438 * 21 20 19 23 23 O 1.21294 * 120.00334 * 179.97438 * 21 20 19 24 24 C 1.38628 * 119.93032 * 80.00567 * 15 14 13 25 25 O 1.35642 * 120.14509 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47778 * 174.85430 * 1 2 3 27 27 H 1.09007 * 109.46624 * 54.85618 * 1 2 3 28 28 H 1.08994 * 109.47094 * 294.86031 * 1 2 3 29 29 H 1.09006 * 109.46931 * 120.00582 * 2 1 3 30 30 H 1.09002 * 109.47077 * 239.99835 * 2 1 3 31 31 H 0.97002 * 119.99927 * 180.02562 * 8 7 5 32 32 H 1.00898 * 110.99121 * 321.97235 * 13 3 2 33 33 H 1.08995 * 109.47219 * 294.73796 * 14 13 3 34 34 H 1.08999 * 109.47280 * 54.74472 * 14 13 3 35 35 H 1.08002 * 119.78009 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.07309 * 179.76417 * 19 17 16 37 37 H 1.09002 * 109.47131 * 0.02562 * 22 21 20 38 38 H 1.08996 * 109.47399 * 119.99834 * 22 21 20 39 39 H 1.09003 * 109.46917 * 240.00457 * 22 21 20 40 40 H 0.96697 * 113.99833 * 90.00099 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1261 1.4438 -0.0927 5 6 1.4358 2.1890 -1.1612 6 1 0.8267 3.0629 -0.9833 7 6 1.6605 1.7562 -2.4510 8 7 1.1327 2.4075 -3.4643 9 14 2.7145 0.2451 -2.7588 10 1 1.8540 -0.9652 -2.7672 11 1 3.3968 0.3765 -4.0712 12 1 3.7305 0.1226 -1.6828 13 7 1.6552 2.0979 1.2572 14 6 2.6444 1.8367 2.3113 15 6 2.2858 2.6268 3.5435 16 6 2.9437 3.8091 3.8196 17 6 2.6184 4.5474 4.9486 18 9 3.2656 5.7053 5.2045 19 6 1.6408 4.1018 5.8132 20 6 0.9699 2.9021 5.5478 21 6 -0.0724 2.4206 6.4624 22 6 -0.4229 3.2182 7.6921 23 8 -0.6516 1.3809 6.2284 24 6 1.3002 2.1623 4.4005 25 8 0.6574 0.9983 4.1322 26 1 -0.3634 -1.0234 -0.0922 27 1 -0.3633 0.5916 -0.8404 28 1 -0.3633 0.4320 0.9324 29 1 1.8933 -0.5140 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.2905 2.1029 -4.3716 32 1 0.7328 1.8098 1.5474 33 1 2.6487 0.7732 2.5501 34 1 3.6334 2.1350 1.9635 35 1 3.7136 4.1636 3.1501 36 1 1.3930 4.6772 6.6929 37 1 0.1969 4.1139 7.7331 38 1 -1.4735 3.5054 7.6516 39 1 -0.2457 2.6123 8.5807 40 1 1.0807 0.2179 4.5155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846990685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:42 Heat of formation + Delta-G solvation = -114.956189 kcal Electronic energy + Delta-G solvation = -23883.732298 eV Core-core repulsion = 20191.675106 eV Total energy + Delta-G solvation = -3692.057192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.92256 -41.51024 -39.63740 -38.35763 -37.59239 -34.93159 -33.76789 -32.38605 -30.58637 -30.13523 -28.76595 -26.21934 -25.00381 -24.89413 -22.78102 -21.35112 -20.74223 -19.50965 -18.63014 -18.14065 -18.07583 -17.11234 -16.83984 -16.53621 -16.41663 -16.31004 -15.84489 -15.63390 -15.42188 -15.05555 -14.77977 -14.68921 -14.44979 -14.15475 -13.89554 -13.28545 -13.17292 -13.05598 -12.84430 -12.77441 -12.66595 -12.49024 -12.39565 -12.23102 -11.85804 -11.68161 -11.26960 -11.13309 -10.68879 -10.62108 -10.16623 -9.58172 -9.01662 -8.22934 -6.22837 -0.57007 -0.03130 1.30005 1.31427 1.35105 1.44838 2.34520 2.37877 2.88737 3.08450 3.11837 3.19118 3.45665 3.73360 3.83328 4.07618 4.11938 4.22873 4.30362 4.33265 4.42447 4.51608 4.57526 4.67130 4.68378 4.79917 4.89519 4.90614 4.94613 5.05837 5.15267 5.20092 5.27383 5.31129 5.56874 5.61793 5.72686 6.03495 6.52983 6.68287 6.70282 6.72610 6.82281 7.40080 8.94579 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.004171 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.145581 B = 6711.521989 C = 7566.155736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.191 3.809 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.032 0.968 7 C 0.013 3.987 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.301 1.301 12 H -0.247 1.247 13 N -0.679 5.679 14 C 0.101 3.899 15 C -0.094 4.094 16 C -0.093 4.093 17 C 0.071 3.929 18 F -0.137 7.137 19 C -0.081 4.081 20 C -0.188 4.188 21 C 0.395 3.605 22 C -0.195 4.195 23 O -0.481 6.481 24 C 0.156 3.844 25 O -0.486 6.486 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.263 0.737 32 H 0.338 0.662 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.185 0.815 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 -0.399 25.043 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.081 3.919 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.050 0.950 7 C -0.183 4.183 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.229 1.229 12 H -0.171 1.171 13 N -0.310 5.310 14 C -0.028 4.028 15 C -0.095 4.095 16 C -0.113 4.113 17 C 0.051 3.949 18 F -0.116 7.116 19 C -0.099 4.099 20 C -0.189 4.189 21 C 0.275 3.725 22 C -0.251 4.251 23 O -0.358 6.358 24 C 0.110 3.890 25 O -0.299 6.299 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.166 0.834 36 H 0.203 0.797 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.174 0.057 24.283 24.490 hybrid contribution 0.557 -1.388 -0.665 1.637 sum 3.731 -1.331 23.618 23.948 Atomic orbital electron populations 1.21550 0.95472 1.00416 1.01514 1.22397 0.97591 0.99396 0.99866 1.19496 0.95211 0.89154 0.87998 0.95063 1.21085 1.29959 1.11398 0.90100 0.94977 1.25687 0.97030 0.99819 0.95798 1.70045 1.47331 1.42580 0.99346 0.85935 0.79849 0.80160 0.76921 1.19512 1.22943 1.17149 1.60551 1.05081 1.62823 1.02557 1.20798 0.96768 0.96867 0.88351 1.20026 0.95885 0.96720 0.96889 1.21335 1.00526 0.93304 0.96112 1.17510 0.96108 0.84461 0.96791 1.91520 1.80200 1.45916 1.93961 1.21610 0.93167 0.95017 1.00126 1.20924 1.02393 0.98212 0.97409 1.22779 0.78799 0.84734 0.86205 1.22286 1.05269 1.02167 0.95400 1.90587 1.47773 1.24095 1.73346 1.18761 0.90010 0.88777 0.91473 1.84750 1.52802 1.15204 1.77187 0.92754 0.93966 0.92756 0.91557 0.94316 0.92800 0.84246 0.93330 0.90111 0.83394 0.79749 0.87500 0.87923 0.87137 0.73383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.40 71.98 0.68 -4.63 16 2 C -0.15 -6.21 5.22 30.59 0.16 -6.05 16 3 C 0.19 8.65 1.93 44.16 0.09 8.74 16 4 H 0.03 1.44 6.76 -2.39 -0.02 1.42 16 5 C -0.49 -27.62 7.83 25.60 0.20 -27.42 16 6 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 7 C 0.01 0.76 5.42 84.66 0.46 1.22 16 8 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 9 Si 0.94 44.68 24.32 68.60 1.67 46.35 16 10 H -0.27 -12.21 6.92 99.48 0.69 -11.53 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 12 H -0.25 -10.70 6.53 99.48 0.65 -10.05 16 13 N -0.68 -27.01 6.19 -499.46 -3.09 -30.11 16 14 C 0.10 3.07 5.30 85.56 0.45 3.52 16 15 C -0.09 -2.49 5.44 -19.80 -0.11 -2.60 16 16 C -0.09 -2.24 9.63 22.36 0.22 -2.03 16 17 C 0.07 1.46 7.28 22.32 0.16 1.63 16 18 F -0.14 -2.89 17.26 44.97 0.78 -2.12 16 19 C -0.08 -1.34 9.42 22.62 0.21 -1.12 16 20 C -0.19 -3.90 5.88 -20.08 -0.12 -4.02 16 21 C 0.40 7.75 7.22 27.92 0.20 7.95 16 22 C -0.19 -1.85 10.19 71.24 0.73 -1.13 16 23 O -0.48 -13.19 15.91 17.89 0.28 -12.90 16 24 C 0.16 3.96 6.70 22.90 0.15 4.11 16 25 O -0.49 -12.74 10.76 -68.60 -0.74 -13.48 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 2.00 6.85 -2.38 -0.02 1.98 16 28 H 0.05 2.04 6.63 -2.39 -0.02 2.02 16 29 H 0.07 2.25 7.50 -2.38 -0.02 2.23 16 30 H 0.04 1.64 3.42 -2.39 -0.01 1.63 16 31 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.34 13.60 6.65 -89.70 -0.60 13.00 16 33 H 0.05 1.33 7.25 -2.39 -0.02 1.31 16 34 H 0.08 2.39 7.77 -2.39 -0.02 2.37 16 35 H 0.15 3.40 8.02 -2.91 -0.02 3.37 16 36 H 0.19 1.56 5.92 -2.91 -0.02 1.54 16 37 H 0.11 0.46 5.60 -2.39 -0.01 0.45 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.41 7.38 9.06 -74.06 -0.67 6.71 16 Total: -1.00 -72.96 328.05 2.44 -70.53 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.24 Total: 23.19 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 3.48 Total: -21.84 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.79 Total: -89.73 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.45 Total: -26.38 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.67 Total: 46.35 kcal Total: -72.96 2.44 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846990685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.428 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds