Wall clock time and date at job start Tue Mar 31 2020 07:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47402 * 2 1 4 4 F 1.39905 * 109.46978 * 240.00123 * 2 1 3 5 5 C 1.53000 * 109.47363 * 120.00456 * 2 1 3 6 6 C 1.52997 * 109.47229 * 184.99560 * 5 2 1 7 7 N 1.46499 * 109.47058 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00532 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99483 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.00576 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.19410 * 0.02562 * 10 8 7 12 12 C 1.37835 * 119.91853 * 179.97438 * 11 10 8 13 13 C 1.38573 * 120.31903 * 0.02562 * 12 11 10 14 14 C 1.38022 * 120.40696 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.06839 * 359.95623 * 14 13 12 16 16 O 1.35527 * 120.16025 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99627 * 354.39561 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.06815 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.06799 * 17 16 15 20 20 N 1.31514 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47501 * 60.00015 * 21 19 17 23 23 H 1.48510 * 109.46856 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47250 * 299.99489 * 21 19 17 25 25 H 1.09001 * 109.46833 * 299.99825 * 1 2 3 26 26 H 1.09004 * 109.46711 * 59.99018 * 1 2 3 27 27 H 1.08994 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47114 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47258 * 300.00332 * 3 2 1 30 30 H 1.09001 * 109.46983 * 60.00267 * 3 2 1 31 31 H 1.09004 * 109.46986 * 64.99441 * 5 2 1 32 32 H 1.09000 * 109.46715 * 304.99987 * 5 2 1 33 33 H 1.08999 * 109.46796 * 60.00185 * 6 5 2 34 34 H 1.08995 * 109.47178 * 299.99712 * 6 5 2 35 35 H 0.97003 * 120.00039 * 0.02562 * 7 6 5 36 36 H 1.07997 * 120.04248 * 0.26955 * 11 10 8 37 37 H 1.07992 * 119.83718 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.79251 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.96390 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6135 1.3135 7 7 4.0532 -1.3036 2.5099 8 6 5.3740 -1.3390 2.7757 9 8 6.1603 -0.7977 2.0227 10 6 5.8657 -2.0336 3.9809 11 6 4.9660 -2.6563 4.8489 12 6 5.4317 -3.3040 5.9730 13 6 6.7895 -3.3405 6.2473 14 6 7.6902 -2.7286 5.3991 15 6 7.2393 -2.0719 4.2621 16 8 8.1221 -1.4709 3.4277 17 6 9.4126 -1.4461 3.8170 18 1 9.7157 -1.9631 4.7155 19 6 10.3511 -0.7565 3.0636 20 7 9.9821 -0.1274 1.9692 21 14 12.1393 -0.7227 3.6026 22 1 12.6678 -2.1096 3.6519 23 1 12.9331 0.0759 2.6343 24 1 12.2385 -0.1069 4.9502 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7516 -1.7716 1.2055 32 1 1.6054 -0.2619 2.1369 33 1 3.8532 0.4368 1.3573 34 1 3.9994 -1.0730 0.4258 35 1 3.4258 -1.7352 3.1109 36 1 3.9072 -2.6344 4.6372 37 1 4.7348 -3.7847 6.6435 38 1 7.1450 -3.8501 7.1307 39 1 8.7468 -2.7611 5.6200 40 1 10.6383 0.3552 1.4425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855744817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:01 Heat of formation + Delta-G solvation = -95.090377 kcal Electronic energy + Delta-G solvation = -23409.087798 eV Core-core repulsion = 19717.892052 eV Total energy + Delta-G solvation = -3691.195745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.73573 -39.57394 -38.14495 -36.35563 -36.06700 -33.62272 -32.32706 -30.81517 -28.97271 -28.79553 -27.73347 -25.39119 -23.98677 -22.47973 -21.28092 -20.43642 -19.73967 -18.03411 -17.55576 -16.25537 -16.06158 -16.00181 -15.29303 -14.96210 -14.87201 -14.61766 -14.13197 -14.10483 -13.84909 -13.70084 -13.19927 -12.98041 -12.73755 -12.52419 -12.46667 -12.38395 -12.16728 -11.90484 -11.70163 -11.44331 -11.21373 -11.11787 -10.88112 -10.87386 -10.79230 -10.68756 -10.46530 -9.56252 -8.86560 -8.82960 -8.52735 -8.25752 -7.29930 -6.42840 -4.03075 1.72916 2.32825 3.12647 3.14776 3.17259 3.61474 3.77406 3.94823 4.34188 4.41770 4.46307 4.60210 4.65668 5.05263 5.08903 5.09526 5.18902 5.27116 5.37629 5.44740 5.48058 5.54830 5.60789 5.72958 5.75801 5.83515 5.93953 6.05141 6.12729 6.13476 6.20917 6.57160 6.70088 6.91888 6.96632 7.06786 7.24814 7.30071 7.70369 7.93386 8.14204 8.96402 9.12423 9.68947 10.70866 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003887 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.361901 B = 7202.453748 C = 8738.888551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.119 3.881 3 C -0.180 4.180 4 F -0.208 7.208 5 C -0.151 4.151 6 C 0.121 3.879 7 N -0.745 5.745 8 C 0.553 3.447 9 O -0.500 6.500 10 C -0.227 4.227 11 C -0.038 4.038 12 C -0.231 4.231 13 C -0.051 4.051 14 C -0.238 4.238 15 C 0.189 3.811 16 O -0.123 6.123 17 C -0.405 4.405 18 H 0.094 0.906 19 C 0.045 3.955 20 N -0.832 5.832 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.391 0.609 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -0.918 1.870 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.100 3.900 3 C -0.238 4.238 4 F -0.189 7.189 5 C -0.189 4.189 6 C -0.003 4.003 7 N -0.401 5.401 8 C 0.342 3.658 9 O -0.374 6.374 10 C -0.232 4.232 11 C -0.057 4.057 12 C -0.251 4.251 13 C -0.070 4.070 14 C -0.257 4.257 15 C 0.129 3.871 16 O -0.021 6.021 17 C -0.481 4.481 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.463 5.463 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.194 1.194 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.225 0.775 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.800 -0.227 0.802 15.822 hybrid contribution 0.537 -0.352 0.630 0.900 sum -15.262 -0.580 1.432 15.340 Atomic orbital electron populations 1.22367 0.93549 1.03448 1.03507 1.20825 0.94396 0.92434 0.82348 1.22492 1.03565 0.94336 1.03386 1.92877 1.90316 1.82815 1.52855 1.22383 0.96529 1.02150 0.97871 1.21252 0.91878 0.98118 0.89048 1.45865 1.07887 1.59402 1.26921 1.18240 0.81350 0.80398 0.85773 1.90953 1.54366 1.43729 1.48370 1.18855 0.91419 1.12743 1.00189 1.20753 0.97155 0.94517 0.93308 1.20456 0.95374 1.08823 1.00406 1.20893 0.93147 0.95681 0.97248 1.21155 1.00692 1.06134 0.97743 1.19277 0.89042 0.90197 0.88550 1.84179 1.16922 1.62292 1.38748 1.21458 0.80911 1.34508 1.11211 0.88917 1.25385 1.00156 0.95351 0.95393 1.70118 1.35112 1.28206 1.12907 0.85798 0.80190 0.78863 0.78661 1.19365 1.20149 1.19376 0.90643 0.91349 0.91400 0.90363 0.91433 0.90595 0.90142 0.89567 0.91290 0.91364 0.77461 0.87090 0.87296 0.87195 0.85080 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 8.93 37.16 0.33 -0.92 16 2 C 0.12 1.19 1.38 -90.62 -0.12 1.06 16 3 C -0.18 -1.71 8.44 37.16 0.31 -1.40 16 4 F -0.21 -2.75 16.49 2.25 0.04 -2.71 16 5 C -0.15 -1.53 4.69 -26.73 -0.13 -1.65 16 6 C 0.12 1.78 5.10 -4.04 -0.02 1.76 16 7 N -0.74 -12.15 5.51 -61.35 -0.34 -12.48 16 8 C 0.55 12.38 7.76 -12.47 -0.10 12.29 16 9 O -0.50 -13.99 15.17 -16.57 -0.25 -14.24 16 10 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 11 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 12 C -0.23 -3.79 10.03 -39.61 -0.40 -4.19 16 13 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 14 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 15 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 16 O -0.12 -3.69 7.84 -21.08 -0.17 -3.85 16 17 C -0.41 -11.57 9.49 30.90 0.29 -11.28 16 18 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 19 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16 20 N -0.83 -25.32 13.67 55.48 0.76 -24.56 16 21 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.89 6.34 -51.93 -0.33 0.56 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 34 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.39 4.97 6.50 -40.82 -0.27 4.70 16 36 H 0.11 1.44 6.40 -52.49 -0.34 1.11 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -35.43 337.90 -7.00 -42.43 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.18 Total: 6.83 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.93 Total: -12.13 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.42 Total: -37.05 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.42 Total: -18.09 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.43 -7.00 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855744817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.663 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds