Wall clock time and date at job start Tue Mar 31 2020 07:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47402 * 2 1 4 4 F 1.39905 * 109.46978 * 240.00123 * 2 1 3 5 5 C 1.53000 * 109.47363 * 120.00456 * 2 1 3 6 6 C 1.52997 * 109.47229 * 184.99560 * 5 2 1 7 7 N 1.46499 * 109.47058 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00532 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99483 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.00576 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.19410 * 0.02562 * 10 8 7 12 12 C 1.37835 * 119.91853 * 179.97438 * 11 10 8 13 13 C 1.38573 * 120.31903 * 0.02562 * 12 11 10 14 14 C 1.38022 * 120.40696 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.06839 * 359.95623 * 14 13 12 16 16 O 1.35527 * 120.16025 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99627 * 354.39561 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.06815 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.06799 * 17 16 15 20 20 N 1.31514 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47501 * 60.00015 * 21 19 17 23 23 H 1.48510 * 109.46856 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47250 * 299.99489 * 21 19 17 25 25 H 1.09001 * 109.46833 * 299.99825 * 1 2 3 26 26 H 1.09004 * 109.46711 * 59.99018 * 1 2 3 27 27 H 1.08994 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47114 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47258 * 300.00332 * 3 2 1 30 30 H 1.09001 * 109.46983 * 60.00267 * 3 2 1 31 31 H 1.09004 * 109.46986 * 64.99441 * 5 2 1 32 32 H 1.09000 * 109.46715 * 304.99987 * 5 2 1 33 33 H 1.08999 * 109.46796 * 60.00185 * 6 5 2 34 34 H 1.08995 * 109.47178 * 299.99712 * 6 5 2 35 35 H 0.97003 * 120.00039 * 0.02562 * 7 6 5 36 36 H 1.07997 * 120.04248 * 0.26955 * 11 10 8 37 37 H 1.07992 * 119.83718 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.79251 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.96390 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6135 1.3135 7 7 4.0532 -1.3036 2.5099 8 6 5.3740 -1.3390 2.7757 9 8 6.1603 -0.7977 2.0227 10 6 5.8657 -2.0336 3.9809 11 6 4.9660 -2.6563 4.8489 12 6 5.4317 -3.3040 5.9730 13 6 6.7895 -3.3405 6.2473 14 6 7.6902 -2.7286 5.3991 15 6 7.2393 -2.0719 4.2621 16 8 8.1221 -1.4709 3.4277 17 6 9.4126 -1.4461 3.8170 18 1 9.7157 -1.9631 4.7155 19 6 10.3511 -0.7565 3.0636 20 7 9.9821 -0.1274 1.9692 21 14 12.1393 -0.7227 3.6026 22 1 12.6678 -2.1096 3.6519 23 1 12.9331 0.0759 2.6343 24 1 12.2385 -0.1069 4.9502 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7516 -1.7716 1.2055 32 1 1.6054 -0.2619 2.1369 33 1 3.8532 0.4368 1.3573 34 1 3.9994 -1.0730 0.4258 35 1 3.4258 -1.7352 3.1109 36 1 3.9072 -2.6344 4.6372 37 1 4.7348 -3.7847 6.6435 38 1 7.1450 -3.8501 7.1307 39 1 8.7468 -2.7611 5.6200 40 1 10.6383 0.3552 1.4425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855744817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:00 Heat of formation + Delta-G solvation = -119.664158 kcal Electronic energy + Delta-G solvation = -23410.153397 eV Core-core repulsion = 19717.892052 eV Total energy + Delta-G solvation = -3692.261345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.66035 -41.28317 -39.86036 -38.03332 -37.22660 -34.97662 -34.32320 -32.31444 -30.57247 -29.98338 -28.43909 -27.37730 -25.29460 -23.91754 -22.89601 -21.68704 -20.98966 -19.85140 -19.23404 -17.88166 -17.32190 -16.98161 -16.40868 -16.36294 -16.26178 -16.10731 -15.79762 -15.56163 -15.47761 -15.25621 -14.66315 -14.31305 -14.19145 -13.91120 -13.55076 -13.28129 -13.18567 -12.99490 -12.89362 -12.82084 -12.68046 -12.51580 -12.38574 -12.35226 -12.15116 -11.70509 -11.55339 -11.42640 -10.82716 -10.62192 -10.12398 -9.77956 -9.03542 -8.44657 -6.16176 0.12462 0.73397 1.31784 1.45058 1.50017 2.09054 2.15875 2.22488 2.87680 3.22765 3.46890 3.52775 3.60679 3.70695 3.80740 3.99244 4.08865 4.15698 4.21390 4.29896 4.50739 4.54731 4.64016 4.67764 4.77833 4.80611 4.90819 4.95147 5.01347 5.07443 5.14079 5.18596 5.27648 5.28987 5.48543 5.51558 5.61616 5.70114 5.95728 6.17819 6.69801 6.94300 7.47972 7.80455 8.75769 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003887 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.361901 B = 7202.453748 C = 8738.888551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 C -0.182 4.182 4 F -0.232 7.232 5 C -0.138 4.138 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.545 3.455 9 O -0.571 6.571 10 C -0.247 4.247 11 C -0.028 4.028 12 C -0.200 4.200 13 C -0.040 4.040 14 C -0.259 4.259 15 C 0.148 3.852 16 O -0.190 6.190 17 C -0.430 4.430 18 H 0.107 0.893 19 C -0.022 4.022 20 N -0.906 5.906 21 Si 1.023 2.977 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.253 1.253 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.414 0.586 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.056 -2.827 5.523 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.089 3.911 3 C -0.239 4.239 4 F -0.213 7.213 5 C -0.175 4.175 6 C -0.005 4.005 7 N -0.371 5.371 8 C 0.335 3.665 9 O -0.451 6.451 10 C -0.251 4.251 11 C -0.047 4.047 12 C -0.218 4.218 13 C -0.058 4.058 14 C -0.278 4.278 15 C 0.093 3.907 16 O -0.093 6.093 17 C -0.506 4.506 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.542 5.542 21 Si 0.841 3.159 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.177 1.177 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.252 0.748 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.432 -2.197 4.526 20.073 hybrid contribution 1.203 0.050 -0.285 1.237 sum -18.229 -2.147 4.241 18.839 Atomic orbital electron populations 1.22333 0.90613 1.04300 1.04879 1.21168 0.96549 0.92067 0.81291 1.22516 1.01679 0.94815 1.04905 1.92836 1.90847 1.83308 1.54311 1.22363 0.92179 1.03575 0.99430 1.21333 0.95419 0.96727 0.87007 1.45581 1.06163 1.58096 1.27295 1.18616 0.82716 0.79700 0.85501 1.90934 1.56657 1.46815 1.50664 1.19309 0.91295 1.13466 1.01062 1.21328 0.98850 0.92384 0.92119 1.21195 0.95557 1.05486 0.99592 1.21448 0.93390 0.93714 0.97252 1.21303 1.01449 1.07197 0.97846 1.20111 0.90157 0.90692 0.89752 1.84184 1.17690 1.65991 1.41414 1.22023 0.81517 1.35077 1.11962 0.87537 1.26783 1.05571 0.94608 0.95196 1.70322 1.36896 1.31449 1.15517 0.84617 0.73126 0.79560 0.78610 1.17772 1.19813 1.17719 0.88240 0.91094 0.90795 0.93343 0.90734 0.88343 0.88746 0.86203 0.92620 0.94636 0.74774 0.81936 0.81646 0.82809 0.85941 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.93 71.98 0.64 -1.23 16 2 C 0.11 2.00 1.38 -10.80 -0.01 1.98 16 3 C -0.18 -3.37 8.44 71.98 0.61 -2.76 16 4 F -0.23 -6.19 16.49 44.97 0.74 -5.45 16 5 C -0.14 -2.45 4.69 30.59 0.14 -2.30 16 6 C 0.12 3.57 5.10 86.38 0.44 4.01 16 7 N -0.72 -22.79 5.51 -466.29 -2.57 -25.35 16 8 C 0.54 25.32 7.76 86.69 0.67 25.99 16 9 O -0.57 -34.85 15.17 16.88 0.26 -34.59 16 10 C -0.25 -10.81 5.89 -19.99 -0.12 -10.93 16 11 C -0.03 -0.84 9.54 22.52 0.21 -0.63 16 12 C -0.20 -5.22 10.03 22.25 0.22 -5.00 16 13 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 14 C -0.26 -11.14 9.16 22.36 0.20 -10.93 16 15 C 0.15 7.74 6.66 22.91 0.15 7.89 16 16 O -0.19 -12.34 7.84 0.74 0.01 -12.33 16 17 C -0.43 -26.43 9.49 67.93 0.64 -25.78 16 18 H 0.11 5.84 5.21 -2.91 -0.02 5.83 16 19 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 20 N -0.91 -60.26 13.67 21.62 0.30 -59.97 16 21 Si 1.02 44.76 29.55 68.60 2.03 46.79 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 1.18 6.34 -2.39 -0.02 1.17 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.84 6.34 -2.39 -0.02 1.82 16 34 H 0.04 1.30 7.93 -2.39 -0.02 1.28 16 35 H 0.41 8.98 6.50 -92.71 -0.60 8.37 16 36 H 0.16 3.08 6.40 -2.91 -0.02 3.06 16 37 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 40 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 Total: -1.00 -91.94 337.90 5.73 -86.22 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.46 Total: 26.27 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.50 Total: -21.58 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.27 Total: -85.32 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: 0.26 Total: -46.92 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.74 Total: -5.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -91.94 5.73 -86.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855744817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.449 kcal (2) G-P(sol) polarization free energy of solvation -91.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds