Wall clock time and date at job start Tue Mar 31 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38185 * 120.84076 * 2 1 4 4 C 1.38722 * 119.29299 * 180.02562 * 3 2 1 5 5 F 1.35097 * 119.48709 * 180.02562 * 4 3 2 6 6 N 1.32187 * 121.02363 * 0.02562 * 4 3 2 7 7 C 1.31648 * 121.85305 * 359.97261 * 6 4 3 8 8 C 1.39613 * 120.58251 * 0.03005 * 7 6 4 9 9 C 1.47600 * 120.53459 * 179.70283 * 8 7 6 10 10 O 1.21479 * 120.00140 * 173.92433 * 9 8 7 11 11 O 1.34727 * 119.99629 * 353.92055 * 9 8 7 12 12 C 1.45206 * 116.99868 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47181 * 299.99861 * 13 12 11 15 15 C 1.53007 * 109.47060 * 59.99868 * 13 12 11 16 16 C 1.52998 * 109.47195 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47124 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00063 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00188 * 180.02562 * 17 16 13 20 20 N 1.31511 * 119.99711 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47427 * 60.00000 * 21 19 17 23 23 H 1.48498 * 109.46785 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46867 * 299.99782 * 21 19 17 25 25 H 1.08999 * 109.46757 * 263.63724 * 1 2 3 26 26 H 1.09008 * 109.46933 * 23.63409 * 1 2 3 27 27 H 1.08995 * 109.47126 * 143.63275 * 1 2 3 28 28 H 1.07995 * 120.35426 * 0.02562 * 3 2 1 29 29 H 1.07990 * 119.71093 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46492 * 300.00042 * 12 11 9 31 31 H 1.08997 * 109.47207 * 59.99239 * 12 11 9 32 32 H 1.09003 * 109.47054 * 59.99998 * 14 13 12 33 33 H 1.08996 * 109.47025 * 179.97438 * 14 13 12 34 34 H 1.08991 * 109.47188 * 299.99602 * 14 13 12 35 35 H 1.09000 * 109.47145 * 59.99523 * 15 13 12 36 36 H 1.08996 * 109.47011 * 180.02562 * 15 13 12 37 37 H 1.09004 * 109.46730 * 299.99735 * 15 13 12 38 38 H 1.08999 * 109.47574 * 300.00286 * 16 13 12 39 39 H 1.08999 * 109.46712 * 60.00801 * 16 13 12 40 40 H 0.97003 * 120.00002 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1865 0.0000 4 6 3.6022 1.1490 -0.0005 5 9 4.2987 2.3066 0.0000 6 7 4.2526 -0.0018 -0.0016 7 6 3.6210 -1.1569 -0.0016 8 6 2.2256 -1.2034 -0.0011 9 6 1.5185 -2.4990 -0.0077 10 8 0.3093 -2.5317 0.1040 11 8 2.2143 -3.6454 -0.1378 12 6 1.4533 -4.8821 -0.1366 13 6 2.4070 -6.0680 -0.2937 14 6 3.1681 -5.9389 -1.6147 15 6 3.4017 -6.0801 0.8688 16 6 1.6052 -7.3711 -0.2918 17 6 2.5447 -8.5392 -0.4472 18 1 3.6074 -8.3692 -0.5379 19 6 2.0475 -9.8249 -0.4738 20 7 0.7535 -10.0319 -0.3639 21 14 3.2121 -11.2728 -0.6657 22 1 4.1774 -11.2847 0.4627 23 1 2.4337 -12.5374 -0.6652 24 1 3.9508 -11.1473 -1.9478 25 1 -0.3633 -0.1139 1.0213 26 1 -0.3633 0.9415 -0.4120 27 1 -0.3633 -0.8275 -0.6093 28 1 1.6951 2.1328 0.0004 29 1 4.1871 -2.0765 -0.0020 30 1 0.9108 -4.9738 0.8043 31 1 0.7450 -4.8736 -0.9650 32 1 3.7394 -5.0106 -1.6156 33 1 3.8479 -6.7835 -1.7264 34 1 2.4596 -5.9303 -2.4429 35 1 2.8595 -6.1720 1.8100 36 1 4.0815 -6.9247 0.7567 37 1 3.9730 -5.1517 0.8678 38 1 1.0633 -7.4629 0.6494 39 1 0.8965 -7.3627 -1.1199 40 1 0.4036 -10.9364 -0.3829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870340633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:43 Heat of formation + Delta-G solvation = -110.696133 kcal Electronic energy + Delta-G solvation = -23356.018159 eV Core-core repulsion = 19664.145697 eV Total energy + Delta-G solvation = -3691.872462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.47488 -41.09243 -39.68967 -37.32786 -35.60796 -34.27661 -32.40625 -31.70902 -28.62293 -27.32447 -26.51144 -26.45419 -24.91245 -23.30683 -22.62377 -21.21013 -18.46711 -18.32327 -17.94216 -17.37130 -16.63689 -16.51784 -16.19905 -16.10687 -15.05862 -14.58816 -14.31423 -14.24723 -14.05456 -13.52957 -13.42874 -13.15712 -13.05361 -12.97880 -12.63444 -12.43202 -12.34308 -12.08015 -11.31712 -10.98337 -10.88046 -10.65403 -10.63106 -10.39364 -10.37261 -10.25782 -10.12796 -9.99264 -9.79268 -9.51480 -9.26463 -8.99497 -8.39208 -6.03666 -4.05001 0.02669 0.60981 2.30020 2.63741 3.06564 3.22805 3.31220 3.36328 3.38182 3.95469 4.17228 4.26754 4.42343 4.62350 4.85355 5.04100 5.21214 5.26906 5.31912 5.35680 5.41830 5.44665 5.66098 5.75159 5.85638 6.00297 6.10204 6.13238 6.31754 6.46105 6.54282 6.66886 6.71623 7.06678 7.07254 7.09226 7.11616 7.56575 7.68176 7.74573 7.94591 8.36030 8.99102 9.58357 11.07934 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032304 B = 0.002982 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.549024 B = 9388.586699 C =10049.613226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.050 3.950 3 C -0.211 4.211 4 C 0.338 3.662 5 F -0.107 7.107 6 N -0.525 5.525 7 C 0.205 3.795 8 C -0.192 4.192 9 C 0.510 3.490 10 O -0.500 6.500 11 O -0.344 6.344 12 C 0.081 3.919 13 C -0.059 4.059 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.156 0.844 29 H 0.187 0.813 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 21.603 0.703 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.042 3.958 3 C -0.233 4.233 4 C 0.186 3.814 5 F -0.085 7.085 6 N -0.240 5.240 7 C 0.046 3.954 8 C -0.195 4.195 9 C 0.354 3.646 10 O -0.390 6.390 11 O -0.261 6.261 12 C 0.008 3.992 13 C -0.059 4.059 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.174 0.826 29 H 0.204 0.796 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.452 21.482 0.735 21.634 hybrid contribution -0.272 -0.676 -0.064 0.732 sum 2.180 20.806 0.671 20.931 Atomic orbital electron populations 1.21204 0.88037 1.04325 1.04790 1.20366 0.97987 0.90060 0.87340 1.21672 0.92428 1.00389 1.08764 1.18456 0.86853 0.81923 0.94140 1.91653 1.80168 1.44089 1.92635 1.67153 1.41715 0.97699 1.17400 1.23078 0.90419 0.94945 0.86908 1.20177 0.95117 0.91978 1.12249 1.20590 0.85660 0.84678 0.73660 1.90799 1.14800 1.87809 1.45624 1.86523 1.42065 1.15150 1.82312 1.23593 0.94451 0.78956 1.02166 1.20839 0.95601 0.93391 0.96089 1.21723 0.99994 1.00611 0.96049 1.21727 0.98943 1.00661 0.97047 1.19119 0.94874 0.88669 0.97484 1.21110 0.93491 0.90510 1.49818 0.92096 1.25006 0.94984 0.99008 0.95451 1.69950 1.11725 1.21337 1.50487 0.86677 0.80880 0.81872 0.78703 1.20236 1.21389 1.20244 0.89146 0.91048 0.87814 0.82593 0.79631 0.91311 0.91334 0.94182 0.91491 0.93725 0.93705 0.91486 0.94196 0.96323 0.96333 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.85 36.01 0.32 -0.76 16 2 C 0.05 0.48 5.95 -103.92 -0.62 -0.14 16 3 C -0.21 -1.77 9.75 -39.42 -0.38 -2.15 16 4 C 0.34 3.48 8.41 -17.22 -0.14 3.34 16 5 F -0.11 -1.08 17.29 2.25 0.04 -1.05 16 6 N -0.52 -6.11 10.36 -13.20 -0.14 -6.25 16 7 C 0.20 2.22 10.79 -17.12 -0.18 2.03 16 8 C -0.19 -2.18 5.89 -104.84 -0.62 -2.80 16 9 C 0.51 7.05 7.84 34.55 0.27 7.33 16 10 O -0.50 -7.74 13.29 -19.25 -0.26 -7.99 16 11 O -0.34 -5.12 8.17 -40.57 -0.33 -5.45 16 12 C 0.08 1.38 4.33 37.16 0.16 1.54 16 13 C -0.06 -1.13 0.61 -154.51 -0.09 -1.22 16 14 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 15 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 16 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 17 C -0.51 -13.42 7.65 -34.44 -0.26 -13.69 16 18 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 21 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.42 8.06 -51.92 -0.42 0.00 16 27 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 28 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.19 1.77 7.63 -52.49 -0.40 1.37 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 33 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 37 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -29.46 338.24 -6.47 -35.93 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.43 Total: -2.68 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.17 Total: -8.24 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.60 Total: -31.60 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.59 Total: -13.44 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.46 -6.47 -35.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870340633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.768 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds